Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8273131.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 713

Gene Structure 712 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8273131.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 299 bp

ctgtctgaagattatgaggctcagatatctgatttcggactagcaaagtggctccccgaaaaatggactcatcatgtagtattccctattgaaggcacattcggatatttgtctccagagtactttatgcatggaatcgtcgacgagaagactgatgtatttgcatatggagttttattactggagatcataacaggtcgtcgtgcagttgataacactcaacaaagccttgtgatatgggcaaaaccacttctggattcgggcaatgtcaaggaactagcagatcctcgattagaaga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009608 GO:0009610 GO:0009620 GO:0009623 GO:0009719 GO:0009723 GO:0009725 GO:0009814 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0023052 GO:0032870 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051020 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

99

Amino Acids

11.28

Weight (kDa)

4.69

Isoelectric Point (pI)

35.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	141
AclWI	GGATC	1 cut(s)	278
AcuI	CTGAAG	1 cut(s)	27
AfaI	GTAC	1 cut(s)	122
AfiI	CCNNNNNNNGG	2 cut(s)	63, 92
AgsI	TTSAA	1 cut(s)	92
Alw26I	GTCTC	1 cut(s)	117
AlwI	GGATC	1 cut(s)	278
BbsI	GAAGAC	1 cut(s)	155
BcoDI	GTCTC	1 cut(s)	117
BfaI	CTAG	2 cut(s)	41, 278
BmcAI	AGTACT	1 cut(s)	122
BmiI	GGNNCC	1 cut(s)	53
BpiI	GAAGAC	1 cut(s)	155
BpmI	CTGGAG	2 cut(s)	99, 203
Bsc4I	CCNNNNNNNGG	2 cut(s)	63, 92
Bse1I	ACTGG	1 cut(s)	186
Bse3DI	GCAATG	1 cut(s)	271
BseLI	CCNNNNNNNGG	2 cut(s)	63, 92
BseMI	GCAATG	1 cut(s)	271
BseMII	CTCAG	1 cut(s)	35
BseNI	ACTGG	1 cut(s)	186
BsgI	GTGCAG	1 cut(s)	225
BslI	CCNNNNNNNGG	2 cut(s)	63, 92
BsmAI	GTCTC	1 cut(s)	117
Bsp143I	GATC	2 cut(s)	186, 283
BspCNI	CTCAG	1 cut(s)	34
BspLI	GGNNCC	1 cut(s)	53
BspPI	GGATC	1 cut(s)	278
BsrDI	GCAATG	1 cut(s)	271
BsrI	ACTGG	1 cut(s)	186
BssMI	GATC	2 cut(s)	186, 283
BstDEI	CTNAG	1 cut(s)	21
BstENI	CCTNNNNNAGG	1 cut(s)	90
BstKTI	GATC	2 cut(s)	189, 286
BstMAI	GTCTC	1 cut(s)	117
BstMBI	GATC	2 cut(s)	186, 283
BstV2I	GAAGAC	1 cut(s)	155
BstX2I	RGATCY	1 cut(s)	283
BstYI	RGATCY	1 cut(s)	283
Csp6I	GTAC	1 cut(s)	121
CviAII	CATG	2 cut(s)	74, 131
CviJI	RGCY	3 cut(s)	20, 52, 228
CviKI_1	RGCY	3 cut(s)	20, 52, 228
CviQI	GTAC	1 cut(s)	121
DdeI	CTNAG	1 cut(s)	21
DpnI	GATC	2 cut(s)	188, 285
DpnII	GATC	2 cut(s)	186, 283
Eco32I	GATATC	1 cut(s)	27
Eco57I	CTGAAG	1 cut(s)	27
EcoNI	CCTNNNNNAGG	1 cut(s)	90
EcoRV	GATATC	1 cut(s)	27
EcoT22I	ATGCAT	1 cut(s)	132
FaeI	CATG	2 cut(s)	77, 134
FaiI	YATR	8 cut(s)	15, 75, 128, 132, 166, 168, 191, 238
FatI	CATG	2 cut(s)	73, 130
FauNDI	CATATG	1 cut(s)	166
FblI	GTMKAC	1 cut(s)	141
FspBI	CTAG	2 cut(s)	41, 278
GsuI	CTGGAG	2 cut(s)	99, 203
Hin1II	CATG	2 cut(s)	77, 134
HincII	GTYRAC	1 cut(s)	142
HindII	GTYRAC	1 cut(s)	142
HinfI	GANTC	3 cut(s)	67, 135, 257
Hpy166II	GTNNAC	1 cut(s)	142
Hpy188I	TCNGA	5 cut(s)	7, 24, 31, 38, 104
Hpy188III	TCNNGA	2 cut(s)	116, 254
Hpy8I	GTNNAC	1 cut(s)	142
Hpy99I	CGWCG	3 cut(s)	143, 146, 204
HpyAV	CCTTC	1 cut(s)	86
HpyCH4V	TGCA	3 cut(s)	130, 164, 206
HpyF3I	CTNAG	1 cut(s)	21
Hsp92II	CATG	2 cut(s)	77, 134
Kzo9I	GATC	2 cut(s)	186, 283
LmnI	GCTCC	1 cut(s)	57
LpnPI	CCDG	4 cut(s)	129, 167, 180, 239
MaeI	CTAG	2 cut(s)	41, 278
MalI	GATC	2 cut(s)	188, 285
MboI	GATC	2 cut(s)	186, 283
MboII	GAAGA	2 cut(s)	20, 160
MflI	RGATCY	1 cut(s)	283
MlyI	GAGTC	1 cut(s)	61
MnlI	CCTC	2 cut(s)	10, 297
Mph1103I	ATGCAT	1 cut(s)	132
NdeI	CATATG	1 cut(s)	166
NdeII	GATC	2 cut(s)	186, 283
NlaIII	CATG	2 cut(s)	77, 134
NlaIV	GGNNCC	1 cut(s)	53
NsiI	ATGCAT	1 cut(s)	132
PfeI	GAWTC	2 cut(s)	135, 257
PleI	GAGTC	1 cut(s)	61
PpsI	GAGTC	1 cut(s)	61
PspN4I	GGNNCC	1 cut(s)	53
PsuI	RGATCY	1 cut(s)	283
RsaI	GTAC	1 cut(s)	122
RsaNI	GTAC	1 cut(s)	121
SalI	GTCGAC	1 cut(s)	140
Sau3AI	GATC	2 cut(s)	186, 283
ScaI	AGTACT	1 cut(s)	122
SchI	GAGTC	1 cut(s)	61
SetI	ASST	1 cut(s)	199
SgrDI	CGTCGACG	1 cut(s)	140
SspMI	CTAG	2 cut(s)	41, 278
TaqI	TCGA	2 cut(s)	141, 289
TatI	WGTACW	1 cut(s)	120
TfiI	GAWTC	2 cut(s)	135, 257
XagI	CCTNNNNNAGG	1 cut(s)	90
XmiI	GTMKAC	1 cut(s)	141
XspI	CTAG	2 cut(s)	41, 278
ZrmI	AGTACT	1 cut(s)	122
Zsp2I	ATGCAT	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.