Rmu_co8282037.1_g000001

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8282037.1
N/A
Physical Location & Seq
Forward (+)
1 .. 557
557 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8282037.1_g000001.1.cds

Sequence Viewer

Length: 382 bp
ggagaaaattattccccccatcgaagaagactccagtacagttctgctaaggaagaacatcgagtctgttcttcctcgataccttgaggcattgaaccattatcctgcaacatacaaatttaacctcagaggaagcccgtcgtggtttgagtcctttttcactgatacaaggtcagggtcgactctagtgtcaattaagctgcctcaaaatctacacaagagtaagaagtggatggcatttgcaatatgtgcatcaattgcagaggaacagcaagaggactatcatgtttattttaaactcaaaacgggtgaatacaatgaggatctgtcccgagaacttgagtacattgtggcaatgtcgtcacaagcaaatcattattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

126

Amino Acids

14.67

Weight (kDa)

5.81

Isoelectric Point (pI)

71.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 188
AccI GTMKAC 1 cut(s) 180
AclWI GGATC 1 cut(s) 331
AcsI RAATTY 1 cut(s) 117
AfaI GTAC 2 cut(s) 38, 345
AgsI TTSAA 1 cut(s) 95
AluBI AGCT 1 cut(s) 200
AluI AGCT 1 cut(s) 200
AlwI GGATC 1 cut(s) 331
Ama87I CYCGRG 1 cut(s) 331
ApeKI GCWGC 1 cut(s) 200
ApoI RAATTY 1 cut(s) 117
AsuHPI GGTGA 1 cut(s) 321
AvaI CYCGRG 1 cut(s) 331
BbsI GAAGAC 1 cut(s) 34
BbvI GCAGC 1 cut(s) 187
BccI CCATC 2 cut(s) 27, 227
BfaI CTAG 1 cut(s) 186
BisI GCNGC 1 cut(s) 201
BlsI GCNGC 1 cut(s) 202
BmeT110I CYCGRG 1 cut(s) 331
BmsI GCATC 1 cut(s) 261
BpiI GAAGAC 1 cut(s) 34
BpmI CTGGAG 1 cut(s) 17
Bpu10I CCTNAGC 1 cut(s) 48
BpuEI CTTGAG 2 cut(s) 105, 360
Bse1I ACTGG 1 cut(s) 34
Bse3DI GCAATG 1 cut(s) 361
BseGI GGATG 1 cut(s) 238
BseMI GCAATG 1 cut(s) 361
BseMII CTCAG 1 cut(s) 140
BseNI ACTGG 1 cut(s) 34
BseXI GCAGC 1 cut(s) 187
BsiHKCI CYCGRG 1 cut(s) 331
BslFI GGGAC 1 cut(s) 314
BsmFI GGGAC 1 cut(s) 314
BsoBI CYCGRG 1 cut(s) 331
Bsp143I GATC 1 cut(s) 323
BspCNI CTCAG 1 cut(s) 139
BspPI GGATC 1 cut(s) 331
BsrDI GCAATG 1 cut(s) 361
BsrI ACTGG 1 cut(s) 34
BssMI GATC 1 cut(s) 323
Bst4CI ACNGT 1 cut(s) 41
BstAPI GCANNNNNTGC 2 cut(s) 249, 258
BstDEI CTNAG 2 cut(s) 48, 126
BstF5I GGATG 1 cut(s) 238
BstKTI GATC 1 cut(s) 326
BstMBI GATC 1 cut(s) 323
BstMWI GCNNNNNNNGC 2 cut(s) 249, 258
BstV1I GCAGC 1 cut(s) 187
BstV2I GAAGAC 1 cut(s) 34
BstX2I RGATCY 1 cut(s) 323
BstYI RGATCY 1 cut(s) 323
BtsCI GGATG 1 cut(s) 238
BtsIMutI CAGTG 1 cut(s) 160
Csp6I GTAC 2 cut(s) 37, 344
CviAII CATG 1 cut(s) 285
CviJI RGCY 2 cut(s) 136, 200
CviKI_1 RGCY 2 cut(s) 136, 200
CviQI GTAC 2 cut(s) 37, 344
DdeI CTNAG 2 cut(s) 48, 126
DpnI GATC 1 cut(s) 325
DpnII GATC 1 cut(s) 323
DraI TTTAAA 1 cut(s) 296
DrdI GACNNNNNNGTC 1 cut(s) 188
DseDI GACNNNNNNGTC 1 cut(s) 188
Eco88I CYCGRG 1 cut(s) 331
FaeI CATG 1 cut(s) 288
FaiI YATR 3 cut(s) 113, 248, 286
FaqI GGGAC 1 cut(s) 314
FatI CATG 1 cut(s) 284
FblI GTMKAC 1 cut(s) 180
Fnu4HI GCNGC 1 cut(s) 201
FokI GGATG 1 cut(s) 245
Fsp4HI GCNGC 1 cut(s) 201
FspBI CTAG 1 cut(s) 186
GluI GCNGC 1 cut(s) 201
GsuI CTGGAG 1 cut(s) 17
Hin1II CATG 1 cut(s) 288
HincII GTYRAC 1 cut(s) 181
HindII GTYRAC 1 cut(s) 181
HinfI GANTC 4 cut(s) 30, 63, 150, 182
HphI GGTGA 1 cut(s) 321
Hpy166II GTNNAC 1 cut(s) 181
Hpy188I TCNGA 1 cut(s) 129
Hpy188III TCNNGA 1 cut(s) 331
Hpy8I GTNNAC 1 cut(s) 181
Hpy99I CGWCG 1 cut(s) 143
HpyCH4III ACNGT 1 cut(s) 41
HpyCH4V TGCA 4 cut(s) 108, 243, 252, 261
HpyF10VI GCNNNNNNNGC 2 cut(s) 249, 258
HpyF3I CTNAG 2 cut(s) 48, 126
Hsp92II CATG 1 cut(s) 288
Kzo9I GATC 1 cut(s) 323
LpnPI CCDG 3 cut(s) 47, 118, 160
Lsp1109I GCAGC 1 cut(s) 187
LweI GCATC 1 cut(s) 261
MaeI CTAG 1 cut(s) 186
MaeIII GTNAC 1 cut(s) 361
MalI GATC 1 cut(s) 325
MboI GATC 1 cut(s) 323
MboII GAAGA 4 cut(s) 36, 39, 63, 65
MfeI CAATTG 1 cut(s) 256
MflI RGATCY 1 cut(s) 323
MluCI AATT 4 cut(s) 7, 117, 193, 256
MlyI GAGTC 4 cut(s) 24, 72, 159, 176
MnlI CCTC 8 cut(s) 80, 85, 123, 135, 214, 257, 269, 314
MseI TTAA 4 cut(s) 121, 196, 295, 380
MunI CAATTG 1 cut(s) 256
MwoI GCNNNNNNNGC 2 cut(s) 249, 258
NdeII GATC 1 cut(s) 323
NlaIII CATG 1 cut(s) 288
NmuCI GTSAC 1 cut(s) 361
PkrI GCNGC 1 cut(s) 202
PleI GAGTC 4 cut(s) 24, 71, 158, 176
PpsI GAGTC 4 cut(s) 24, 71, 158, 176
PsuI RGATCY 1 cut(s) 323
RsaI GTAC 2 cut(s) 38, 345
RsaNI GTAC 2 cut(s) 37, 344
SalI GTCGAC 1 cut(s) 179
SaqAI TTAA 4 cut(s) 121, 196, 295, 380
SatI GCNGC 1 cut(s) 201
Sau3AI GATC 1 cut(s) 323
SchI GAGTC 4 cut(s) 24, 72, 159, 176
SetI ASST 4 cut(s) 85, 127, 174, 202
SfaNI GCATC 1 cut(s) 261
SmlI CTYRAG 2 cut(s) 84, 339
SmoI CTYRAG 2 cut(s) 84, 339
Sse9I AATT 4 cut(s) 7, 117, 193, 256
SspMI CTAG 1 cut(s) 186
TaaI ACNGT 1 cut(s) 41
TaqI TCGA 4 cut(s) 22, 61, 77, 180
TasI AATT 4 cut(s) 7, 117, 193, 256
TatI WGTACW 2 cut(s) 36, 343
Tru1I TTAA 4 cut(s) 121, 196, 295, 380
Tru9I TTAA 4 cut(s) 121, 196, 295, 380
TscAI CASTG 1 cut(s) 167
TseFI GTSAC 1 cut(s) 361
TseI GCWGC 1 cut(s) 200
Tsp45I GTSAC 1 cut(s) 361
TspRI CASTG 1 cut(s) 167
XapI RAATTY 1 cut(s) 117
XmiI GTMKAC 1 cut(s) 180
XspI CTAG 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.