Rmu_co8288283.1_g000001
WRKY Family

WRKY transcription factor

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8288283.1
N/A
Physical Location & Seq
Reverse (-)
112 .. 773
662 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8288283.1_g000001.1.cds

Sequence Viewer

Length: 570 bp
ctgaactgtcctgtcaaaaagaaagttgagcgttctcctactggcgaaataactgagattatctacaaagggcaacataaccatgatccacctcaacccaataaacgtgcaaaagatggtggtggtcagaatggacatatggattctcagcctaagcttgaaaatggtttacaaagaagggttggagattcaaacaggtcttctgaagctgtgcctgagagggattatgagcacgctcaaactgctcctgtgcagttaccaagtgacagtgaagacttgggtgatgcggaaaccagagaagaaggggatgttgatgaacctaatccaaagagaaggaacattgatggtgttgcatctgaggtagctttgcctcacaagacggtgacagaacctaaaatcattgtgcaaacaaggagtgaagttgatcttcttgatgatggttacaggtggagaaagtatgggcagaaagtagtcaaagggaatcctcatccaaggtgggaactttctccatatgtttatttgcttgttttcagtttttctgatttaagagtcttcaattccgagtgttaa

Protein Analysis

189

Amino Acids

21.35

Weight (kDa)

5.73

Isoelectric Point (pI)

69.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 287
AclWI GGATC 1 cut(s) 80
AcuI CTGAAG 1 cut(s) 225
AgsI TTSAA 3 cut(s) 161, 192, 556
AluBI AGCT 3 cut(s) 157, 209, 365
AluI AGCT 3 cut(s) 157, 209, 365
Alw21I GWGCWC 1 cut(s) 234
AlwI GGATC 1 cut(s) 80
AsuHPI GGTGA 2 cut(s) 293, 394
BbsI GAAGAC 3 cut(s) 192, 279, 544
Bbv12I GWGCWC 1 cut(s) 234
BccI CCATC 3 cut(s) 110, 338, 431
BmsI GCATC 2 cut(s) 274, 362
BpiI GAAGAC 3 cut(s) 192, 279, 544
Bpu10I CCTNAGC 1 cut(s) 153
BsaJI CCNNGG 1 cut(s) 491
Bse1I ACTGG 1 cut(s) 46
BseDI CCNNGG 1 cut(s) 491
BseGI GGATG 2 cut(s) 313, 487
BseMII CTCAG 4 cut(s) 45, 161, 207, 348
BseNI ACTGG 1 cut(s) 46
BsgI GTGCAG 1 cut(s) 272
BsiHKAI GWGCWC 1 cut(s) 234
Bsp1286I GDGCHC 1 cut(s) 234
Bsp143I GATC 2 cut(s) 85, 424
BspACI CCGC 1 cut(s) 287
BspCNI CTCAG 4 cut(s) 46, 160, 208, 349
BspPI GGATC 1 cut(s) 80
BsrI ACTGG 1 cut(s) 46
BssECI CCNNGG 1 cut(s) 491
BssMI GATC 2 cut(s) 85, 424
BssT1I CCWWGG 1 cut(s) 491
Bst4CI ACNGT 3 cut(s) 8, 269, 382
BstC8I GCNNGC 1 cut(s) 234
BstDEI CTNAG 5 cut(s) 54, 147, 153, 216, 357
BstF5I GGATG 2 cut(s) 313, 487
BstKTI GATC 2 cut(s) 88, 427
BstMBI GATC 2 cut(s) 85, 424
BstMWI GCNNNNNNNGC 1 cut(s) 242
BstV2I GAAGAC 3 cut(s) 192, 279, 544
BtsCI GGATG 2 cut(s) 313, 487
BtsIMutI CAGTG 1 cut(s) 274
Cac8I GCNNGC 1 cut(s) 234
CviAII CATG 1 cut(s) 83
CviJI RGCY 4 cut(s) 151, 157, 209, 365
CviKI_1 RGCY 4 cut(s) 151, 157, 209, 365
DdeI CTNAG 5 cut(s) 54, 147, 153, 216, 357
DpnI GATC 2 cut(s) 87, 426
DpnII GATC 2 cut(s) 85, 424
Eco130I CCWWGG 1 cut(s) 491
Eco57I CTGAAG 1 cut(s) 225
EcoT14I CCWWGG 1 cut(s) 491
ErhI CCWWGG 1 cut(s) 491
FaeI CATG 1 cut(s) 86
FaiI YATR 8 cut(s) 78, 84, 138, 140, 228, 459, 511, 513
FalI AAGNNNNNCTT 2 cut(s) 411, 443
FatI CATG 1 cut(s) 82
FauNDI CATATG 2 cut(s) 138, 511
FokI GGATG 2 cut(s) 320, 474
Hin1II CATG 1 cut(s) 86
HindIII AAGCTT 1 cut(s) 155
HinfI GANTC 4 cut(s) 143, 188, 481, 549
HphI GGTGA 2 cut(s) 293, 394
Hpy166II GTNNAC 1 cut(s) 170
Hpy188I TCNGA 5 cut(s) 129, 205, 358, 541, 562
Hpy188III TCNNGA 1 cut(s) 431
Hpy8I GTNNAC 1 cut(s) 170
HpyAV CCTTC 3 cut(s) 171, 296, 327
HpyCH4III ACNGT 3 cut(s) 8, 269, 382
HpyCH4IV ACGT 1 cut(s) 106
HpyCH4V TGCA 4 cut(s) 110, 253, 353, 406
HpyF10VI GCNNNNNNNGC 1 cut(s) 242
HpyF3I CTNAG 5 cut(s) 54, 147, 153, 216, 357
HpySE526I ACGT 1 cut(s) 106
Hsp92II CATG 1 cut(s) 86
Kzo9I GATC 2 cut(s) 85, 424
LmnI GCTCC 1 cut(s) 250
LpnPI CCDG 7 cut(s) 24, 27, 181, 228, 261, 307, 430
LweI GCATC 2 cut(s) 274, 362
MaeII ACGT 1 cut(s) 106
MaeIII GTNAC 4 cut(s) 255, 263, 382, 440
MalI GATC 2 cut(s) 87, 426
MboI GATC 2 cut(s) 85, 424
MboII GAAGA 5 cut(s) 192, 284, 311, 419, 544
MhlI GDGCHC 1 cut(s) 234
MluCI AATT 1 cut(s) 556
MlyI GAGTC 1 cut(s) 558
MmeI TCCRAC 1 cut(s) 163
MnlI CCTC 5 cut(s) 102, 213, 352, 381, 495
MseI TTAA 2 cut(s) 545, 568
MslI CAYNNNNRTG 1 cut(s) 81
MwoI GCNNNNNNNGC 1 cut(s) 242
NdeI CATATG 2 cut(s) 138, 511
NdeII GATC 2 cut(s) 85, 424
NlaIII CATG 1 cut(s) 86
NmuCI GTSAC 2 cut(s) 263, 382
PfeI GAWTC 3 cut(s) 143, 188, 481
PleI GAGTC 1 cut(s) 557
PpsI GAGTC 1 cut(s) 557
RseI CAYNNNNRTG 1 cut(s) 81
SaqAI TTAA 2 cut(s) 545, 568
Sau3AI GATC 2 cut(s) 85, 424
SchI GAGTC 1 cut(s) 558
SduI GDGCHC 1 cut(s) 234
SfaNI GCATC 2 cut(s) 274, 362
SmiMI CAYNNNNRTG 1 cut(s) 81
Sse9I AATT 1 cut(s) 556
SsiI CCGC 1 cut(s) 287
StyI CCWWGG 1 cut(s) 491
TaaI ACNGT 3 cut(s) 8, 269, 382
TaiI ACGT 1 cut(s) 109
TasI AATT 1 cut(s) 556
TfiI GAWTC 3 cut(s) 143, 188, 481
Tru1I TTAA 2 cut(s) 545, 568
Tru9I TTAA 2 cut(s) 545, 568
TscAI CASTG 1 cut(s) 274
TseFI GTSAC 2 cut(s) 263, 382
Tsp45I GTSAC 2 cut(s) 263, 382
TspDTI ATGAA 1 cut(s) 330
TspRI CASTG 1 cut(s) 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.