Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8300711.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 882

Gene Structure 882 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8300711.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ctgagagacctggacctgtccaacaaccggattcagtatattgaagatcttgccccgctggcgcagctgaagctgacctcgcttgatctgtatgagtgtccggtgacgcgtgtcaaggattaccgatctagggttttcgggttgattaggtcgttgaagtatttggataagatggatgcggaggagaacgagccgccggagagcgaggatgaggaggaggaggatgaggaggatgaggatgaccctgggagcggggaaatcgatggtgaggatcggccttctaggatgagtaatgggcacactgaggcggctgaaggggttgtggatgttgatgaggatgatgagagtgacgccgatgaggaggagactttgactgccactagggtgaatggacagaatcacccgacggagaacgggttccgggttgctcccgtggccggagagaatggaggagaggatgaggaggatgatgatgatgagaactactctgcggaggagatagacgaggaggatagtgaggatgatgaggtggtggaggtgcatgagattgaggatagtgatgatgaggaagatggggttgagtatgatgaggaggatgacgacgatgacgacgacgatgaagatgatgaggaggaggaagtggacaatgatgagggggatttggcagagccagagagtacaggaaggttaacaagcacagagggagagattgatggccatgagcaaggagaggatgatggagatgaagatgataatggagagaccggggaggaggagctgggtgttgaagaagagggaccgcttgaagttgaagttgaagatgaagatggcgaggaagag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006338 GO:0006810 GO:0006913 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0031497 GO:0034622 GO:0034728 GO:0042393 GO:0043044 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043486 GO:0043933 GO:0044085 GO:0044424 GO:0044464 GO:0046907 GO:0051169 GO:0051179 GO:0051234 GO:0051276 GO:0051641 GO:0051649 GO:0065003 GO:0065004 GO:0071103 GO:0071824 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_4 LRR_9

Protein Analysis

280

Amino Acids

31.37

Weight (kDa)

4.05

Isoelectric Point (pI)

68.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	252
AccII	CGCG	1 cut(s)	109
AciI	CCGC	7 cut(s)	56, 179, 194, 252, 308, 491, 800
AclWI	GGATC	1 cut(s)	279
AcoI	YGGCCR	2 cut(s)	435, 715
AcuI	CTGAAG	2 cut(s)	89, 333
AcyI	GRCGYC	1 cut(s)	351
AfaI	GTAC	1 cut(s)	679
AfiI	CCNNNNNNNGG	4 cut(s)	27, 130, 251, 437
AflIII	ACRYGT	1 cut(s)	107
AgsI	TTSAA	6 cut(s)	44, 157, 788, 806, 812, 818
AjnI	CCWGG	2 cut(s)	9, 244
AleI	CACNNNNGTG	1 cut(s)	383
AloI	GAACNNNNNNTCC	2 cut(s)	401, 433
AluBI	AGCT	3 cut(s)	67, 73, 778
AluI	AGCT	3 cut(s)	67, 73, 778
Alw26I	GTCTC	2 cut(s)	359, 755
AlwI	GGATC	1 cut(s)	279
AoxI	GGCC	3 cut(s)	275, 435, 715
ApeKI	GCWGC	1 cut(s)	64
Asp700I	GAANNNNTTC	1 cut(s)	416
AspLEI	GCGC	1 cut(s)	64
AspS9I	GGNCC	2 cut(s)	13, 797
AsuC2I	CCSGG	2 cut(s)	422, 766
AsuHPI	GGTGA	4 cut(s)	115, 278, 392, 397
AvaII	GGWCC	2 cut(s)	13, 797
BaeGI	GKGCMC	1 cut(s)	300
BalI	TGGCCA	1 cut(s)	717
BbvI	GCAGC	1 cut(s)	76
BccI	CCATC	6 cut(s)	166, 257, 566, 707, 731, 821
BciT130I	CCWGG	2 cut(s)	11, 246
BcnI	CCSGG	2 cut(s)	422, 766
BcoDI	GTCTC	2 cut(s)	359, 755
BfaI	CTAG	3 cut(s)	129, 282, 381
BglI	GCCNNNNNGGC	1 cut(s)	59
BglII	AGATCT	1 cut(s)	46
BisI	GCNGC	3 cut(s)	65, 194, 309
BlsI	GCNGC	3 cut(s)	66, 195, 310
Bme1390I	CCNGG	4 cut(s)	11, 246, 422, 766
Bme18I	GGWCC	2 cut(s)	13, 797
BmgT120I	GGNCC	2 cut(s)	13, 797
BmiI	GGNNCC	2 cut(s)	419, 798
BmrFI	CCNGG	4 cut(s)	11, 246, 422, 766
BmsI	GCATC	1 cut(s)	166
BoxI	GACNNNNGTC	1 cut(s)	110
BplI	GAGNNNNNCTC	2 cut(s)	470, 502
BpuMI	CCSGG	2 cut(s)	422, 766
Bsa29I	ATCGAT	1 cut(s)	261
BsaHI	GRCGYC	1 cut(s)	351
BsaI	GGTCTC	1 cut(s)	755
BsaJI	CCNNGG	4 cut(s)	244, 245, 432, 765
BsaWI	WCCGGW	2 cut(s)	27, 100
BsaXI	ACNNNNNCTCC	2 cut(s)	401, 431
Bsc4I	CCNNNNNNNGG	4 cut(s)	27, 130, 251, 437
BseBI	CCWGG	2 cut(s)	11, 246
BseCI	ATCGAT	1 cut(s)	261
BseDI	CCNNGG	4 cut(s)	244, 245, 432, 765
BseLI	CCNNNNNNNGG	4 cut(s)	27, 130, 251, 437
BseMII	CTCAG	1 cut(s)	294
BseSI	GKGCMC	1 cut(s)	300
BseXI	GCAGC	1 cut(s)	76
BseYI	CCCAGC	1 cut(s)	778
Bsh1236I	CGCG	1 cut(s)	109
BshFI	GGCC	3 cut(s)	277, 437, 717
BshVI	ATCGAT	1 cut(s)	261
BsiSI	CCGG	6 cut(s)	28, 101, 197, 421, 438, 765
BslFI	GGGAC	1 cut(s)	810
BslI	CCNNNNNNNGG	4 cut(s)	27, 130, 251, 437
BsmAI	GTCTC	2 cut(s)	359, 755
BsmFI	GGGAC	1 cut(s)	810
BsnI	GGCC	3 cut(s)	277, 437, 717
Bso31I	GGTCTC	1 cut(s)	755
Bsp1286I	GDGCHC	1 cut(s)	300
Bsp143I	GATC	4 cut(s)	46, 85, 125, 271
BspACI	CCGC	7 cut(s)	56, 179, 194, 252, 308, 491, 800
BspANI	GGCC	3 cut(s)	277, 437, 717
BspCNI	CTCAG	1 cut(s)	295
BspDI	ATCGAT	1 cut(s)	261
BspFNI	CGCG	1 cut(s)	109
BspLI	GGNNCC	2 cut(s)	419, 798
BspPI	GGATC	1 cut(s)	279
BspTNI	GGTCTC	1 cut(s)	755
BsrBI	CCGCTC	1 cut(s)	252
BssECI	CCNNGG	4 cut(s)	244, 245, 432, 765
BssMI	GATC	4 cut(s)	46, 85, 125, 271
BssNI	GRCGYC	1 cut(s)	351
Bst2UI	CCWGG	2 cut(s)	11, 246
Bst6I	CTCTTC	2 cut(s)	786, 831
BstACI	GRCGYC	1 cut(s)	351
BstC8I	GCNNGC	1 cut(s)	60
BstDEI	CTNAG	2 cut(s)	2, 303
BstDSI	CCRYGG	1 cut(s)	432
BstFNI	CGCG	1 cut(s)	109
BstHHI	GCGC	1 cut(s)	64
BstKTI	GATC	4 cut(s)	49, 88, 128, 274
BstMAI	GTCTC	2 cut(s)	359, 755
BstMBI	GATC	4 cut(s)	46, 85, 125, 271
BstMWI	GCNNNNNNNGC	5 cut(s)	59, 64, 70, 79, 434
BstNI	CCWGG	2 cut(s)	11, 246
BstPAI	GACNNNNGTC	1 cut(s)	110
BstSCI	CCNGG	4 cut(s)	9, 244, 420, 764
BstSLI	GKGCMC	1 cut(s)	300
BstUI	CGCG	1 cut(s)	109
BstV1I	GCAGC	1 cut(s)	76
BstX2I	RGATCY	1 cut(s)	46
BstYI	RGATCY	1 cut(s)	46
Bsu15I	ATCGAT	1 cut(s)	261
BsuRI	GGCC	3 cut(s)	277, 437, 717
BsuTUI	ATCGAT	1 cut(s)	261
BtgI	CCRYGG	1 cut(s)	432
BtsIMutI	CAGTG	1 cut(s)	300
Cac8I	GCNNGC	1 cut(s)	60
CfoI	GCGC	1 cut(s)	64
Cfr13I	GGNCC	2 cut(s)	13, 797
ClaI	ATCGAT	1 cut(s)	261
CseI	GACGC	2 cut(s)	115, 359
Csp6I	GTAC	1 cut(s)	678
CviAII	CATG	2 cut(s)	542, 719
CviJI	RGCY	9 cut(s)	67, 73, 193, 277, 311, 437, 670, 717, 778
CviKI_1	RGCY	9 cut(s)	67, 73, 193, 277, 311, 437, 670, 717, 778
CviQI	GTAC	1 cut(s)	678
DdeI	CTNAG	2 cut(s)	2, 303
DpnI	GATC	4 cut(s)	48, 87, 127, 273
DpnII	GATC	4 cut(s)	46, 85, 125, 271
EaeI	YGGCCR	2 cut(s)	435, 715
Eam1104I	CTCTTC	2 cut(s)	786, 831
EarI	CTCTTC	2 cut(s)	786, 831
Eco31I	GGTCTC	1 cut(s)	755
Eco47I	GGWCC	2 cut(s)	13, 797
Eco57I	CTGAAG	2 cut(s)	89, 333
EcoRII	CCWGG	2 cut(s)	9, 244
FaeI	CATG	2 cut(s)	545, 722
FaiI	YATR	5 cut(s)	39, 93, 543, 585, 720
FaqI	GGGAC	1 cut(s)	810
FatI	CATG	2 cut(s)	541, 718
FauI	CCCGC	2 cut(s)	63, 245
Fnu4HI	GCNGC	3 cut(s)	65, 194, 309
Fsp4HI	GCNGC	3 cut(s)	65, 194, 309
FspBI	CTAG	3 cut(s)	129, 282, 381
GlaI	GCGC	1 cut(s)	63
GluI	GCNGC	3 cut(s)	65, 194, 309
GsaI	CCCAGC	1 cut(s)	782
HaeIII	GGCC	3 cut(s)	277, 437, 717
HapII	CCGG	6 cut(s)	28, 101, 197, 421, 438, 765
HgaI	GACGC	2 cut(s)	115, 359
HhaI	GCGC	1 cut(s)	64
Hin1I	GRCGYC	1 cut(s)	351
Hin1II	CATG	2 cut(s)	545, 722
Hin6I	GCGC	1 cut(s)	62
HinP1I	GCGC	1 cut(s)	62
HincII	GTYRAC	1 cut(s)	690
HindII	GTYRAC	1 cut(s)	690
HinfI	GANTC	2 cut(s)	31, 397
HpaI	GTTAAC	1 cut(s)	690
HpaII	CCGG	6 cut(s)	28, 101, 197, 421, 438, 765
HphI	GGTGA	4 cut(s)	115, 278, 392, 397
Hpy166II	GTNNAC	2 cut(s)	643, 690
Hpy8I	GTNNAC	2 cut(s)	643, 690
Hpy99I	CGWCG	4 cut(s)	409, 605, 614, 617
HpyAV	CCTTC	3 cut(s)	288, 308, 678
HpyCH4V	TGCA	1 cut(s)	541
HpyF10VI	GCNNNNNNNGC	5 cut(s)	59, 64, 70, 79, 434
HpyF3I	CTNAG	2 cut(s)	2, 303
Hsp92I	GRCGYC	1 cut(s)	351
Hsp92II	CATG	2 cut(s)	545, 722
HspAI	GCGC	1 cut(s)	62
KspAI	GTTAAC	1 cut(s)	690
Kzo9I	GATC	4 cut(s)	46, 85, 125, 271
LmnI	GCTCC	3 cut(s)	249, 433, 775
Lsp1109I	GCAGC	1 cut(s)	76
LweI	GCATC	1 cut(s)	166
MaeI	CTAG	3 cut(s)	129, 282, 381
MaeIII	GTNAC	2 cut(s)	103, 347
MalI	GATC	4 cut(s)	48, 87, 127, 273
MbiI	CCGCTC	1 cut(s)	252
MboI	GATC	4 cut(s)	46, 85, 125, 271
MboII	GAAGA	8 cut(s)	56, 581, 632, 758, 800, 803, 830, 836
MflI	RGATCY	1 cut(s)	46
MhlI	GDGCHC	1 cut(s)	300
MlsI	TGGCCA	1 cut(s)	717
MluI	ACGCGT	1 cut(s)	107
MluNI	TGGCCA	1 cut(s)	717
MmeI	TCCRAC	1 cut(s)	45
Mox20I	TGGCCA	1 cut(s)	717
MroXI	GAANNNNTTC	1 cut(s)	416
MscI	TGGCCA	1 cut(s)	717
MseI	TTAA	1 cut(s)	689
MslI	CAYNNNNRTG	1 cut(s)	383
Msp20I	TGGCCA	1 cut(s)	717
MspA1I	CMGCKG	2 cut(s)	58, 67
MspI	CCGG	6 cut(s)	28, 101, 197, 421, 438, 765
MspR9I	CCNGG	4 cut(s)	11, 246, 422, 766
MvaI	CCWGG	2 cut(s)	11, 246
MvnI	CGCG	1 cut(s)	109
MwoI	GCNNNNNNNGC	5 cut(s)	59, 64, 70, 79, 434
NciI	CCSGG	2 cut(s)	422, 766
NdeII	GATC	4 cut(s)	46, 85, 125, 271
NlaIII	CATG	2 cut(s)	545, 722
NlaIV	GGNNCC	2 cut(s)	419, 798
NmuCI	GTSAC	2 cut(s)	103, 347
OliI	CACNNNNGTG	1 cut(s)	383
PasI	CCCWGGG	1 cut(s)	245
PcsI	WCGNNNNNNNCGW	2 cut(s)	606, 609
PdmI	GAANNNNTTC	1 cut(s)	416
PfeI	GAWTC	2 cut(s)	31, 397
PkrI	GCNGC	3 cut(s)	66, 195, 310
PshAI	GACNNNNGTC	1 cut(s)	110
Psp6I	CCWGG	2 cut(s)	9, 244
PspFI	CCCAGC	1 cut(s)	778
PspGI	CCWGG	2 cut(s)	9, 244
PspN4I	GGNNCC	2 cut(s)	419, 798
PspPI	GGNCC	2 cut(s)	13, 797
PsuI	RGATCY	1 cut(s)	46
PvuII	CAGCTG	1 cut(s)	67
RsaI	GTAC	1 cut(s)	679
RsaNI	GTAC	1 cut(s)	678
RseI	CAYNNNNRTG	1 cut(s)	383
SaqAI	TTAA	1 cut(s)	689
SatI	GCNGC	3 cut(s)	65, 194, 309
Sau3AI	GATC	4 cut(s)	46, 85, 125, 271
Sau96I	GGNCC	2 cut(s)	13, 797
ScrFI	CCNGG	4 cut(s)	11, 246, 422, 766
SduI	GDGCHC	1 cut(s)	300
SfaNI	GCATC	1 cut(s)	166
SinI	GGWCC	2 cut(s)	13, 797
SmiMI	CAYNNNNRTG	1 cut(s)	383
SsiI	CCGC	7 cut(s)	56, 179, 194, 252, 308, 491, 800
SspMI	CTAG	3 cut(s)	129, 282, 381
StyD4I	CCNGG	4 cut(s)	9, 244, 420, 764
TaqI	TCGA	1 cut(s)	261
TatI	WGTACW	1 cut(s)	677
TauI	GCSGC	2 cut(s)	196, 311
TfiI	GAWTC	2 cut(s)	31, 397
Tru1I	TTAA	1 cut(s)	689
Tru9I	TTAA	1 cut(s)	689
TscAI	CASTG	1 cut(s)	307
TseFI	GTSAC	2 cut(s)	103, 347
TseI	GCWGC	1 cut(s)	64
Tsp45I	GTSAC	2 cut(s)	103, 347
TspDTI	ATGAA	3 cut(s)	633, 759, 837
TspGWI	ACGGA	1 cut(s)	422
TspRI	CASTG	1 cut(s)	307
VpaK11BI	GGWCC	2 cut(s)	13, 797
XmnI	GAANNNNTTC	1 cut(s)	416
XspI	CTAG	3 cut(s)	129, 282, 381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.