Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8303675.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

256 .. 875

Gene Structure 620 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8303675.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

atgacaactgctattgcaattgaggatgtgaggagggaggtcaaaatattacgtgccttgaccggacatacaaatctagttcagttctatgatgcatttgaagacagtgacaatgtctacatagtaatggagttgtgtgaaggtggggagcttttggatagaatactttcaaggggtggaaaatactcagaggatgatgcaaagactgtcatggttcaaatactgaatgttgttgcattttgtcatcttcagggtgtggtgcaccgtgatcttaagccagaggtggaacatttatttacccttgtagcatataattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0004713 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009937 GO:0009939 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018108 GO:0018193 GO:0018209 GO:0018212 GO:0019538 GO:0023051 GO:0023052 GO:0023056 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

105

Amino Acids

11.91

Weight (kDa)

4.91

Isoelectric Point (pI)

41.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	117
AcuI	CTGAAG	1 cut(s)	233
AflII	CTTAAG	1 cut(s)	272
AgsI	TTSAA	3 cut(s)	101, 171, 218
AluBI	AGCT	1 cut(s)	151
AluI	AGCT	1 cut(s)	151
Alw21I	GWGCWC	1 cut(s)	264
Alw44I	GTGCAC	1 cut(s)	260
ApaLI	GTGCAC	1 cut(s)	260
Asp700I	GAANNNNTTC	1 cut(s)	166
BaeGI	GKGCMC	1 cut(s)	264
BbsI	GAAGAC	1 cut(s)	108
Bbv12I	GWGCWC	1 cut(s)	264
BfaI	CTAG	1 cut(s)	77
BfrI	CTTAAG	1 cut(s)	272
BmsI	GCATC	2 cut(s)	82, 187
BpiI	GAAGAC	1 cut(s)	108
BsaAI	YACGTR	1 cut(s)	53
BsaWI	WCCGGW	1 cut(s)	62
BseGI	GGATG	2 cut(s)	31, 199
BseMII	CTCAG	1 cut(s)	201
BseRI	GAGGAG	1 cut(s)	46
BseSI	GKGCMC	1 cut(s)	264
BsiHKAI	GWGCWC	1 cut(s)	264
BsiSI	CCGG	1 cut(s)	63
Bsp1286I	GDGCHC	1 cut(s)	264
Bsp143I	GATC	1 cut(s)	268
BspCNI	CTCAG	1 cut(s)	200
BspTI	CTTAAG	1 cut(s)	272
BssMI	GATC	1 cut(s)	268
Bst4CI	ACNGT	3 cut(s)	107, 208, 266
BstAFI	CTTAAG	1 cut(s)	272
BstBAI	YACGTR	1 cut(s)	53
BstDEI	CTNAG	1 cut(s)	187
BstF5I	GGATG	2 cut(s)	31, 199
BstKTI	GATC	1 cut(s)	271
BstMBI	GATC	1 cut(s)	268
BstSLI	GKGCMC	1 cut(s)	264
BstV2I	GAAGAC	1 cut(s)	108
BtsCI	GGATG	2 cut(s)	31, 199
BtsIMutI	CAGTG	1 cut(s)	112
CviAII	CATG	1 cut(s)	211
CviJI	RGCY	2 cut(s)	151, 277
CviKI_1	RGCY	2 cut(s)	151, 277
DdeI	CTNAG	1 cut(s)	187
DpnI	GATC	1 cut(s)	270
DpnII	GATC	1 cut(s)	268
Eco57I	CTGAAG	1 cut(s)	233
EcoT22I	ATGCAT	1 cut(s)	97
FaeI	CATG	1 cut(s)	214
FaiI	YATR	6 cut(s)	69, 90, 122, 212, 310, 312
FatI	CATG	1 cut(s)	210
FblI	GTMKAC	1 cut(s)	117
FokI	GGATG	2 cut(s)	38, 206
FspBI	CTAG	1 cut(s)	77
HapII	CCGG	1 cut(s)	63
Hin1II	CATG	1 cut(s)	214
HpaII	CCGG	1 cut(s)	63
Hpy166II	GTNNAC	2 cut(s)	118, 262
Hpy188I	TCNGA	1 cut(s)	190
Hpy8I	GTNNAC	2 cut(s)	118, 262
HpyAV	CCTTC	1 cut(s)	134
HpyCH4III	ACNGT	3 cut(s)	107, 208, 266
HpyCH4IV	ACGT	1 cut(s)	52
HpyCH4V	TGCA	5 cut(s)	17, 95, 200, 236, 262
HpyF3I	CTNAG	1 cut(s)	187
HpySE526I	ACGT	1 cut(s)	52
Hsp92II	CATG	1 cut(s)	214
Kzo9I	GATC	1 cut(s)	268
LmnI	GCTCC	1 cut(s)	148
LpnPI	CCDG	3 cut(s)	76, 236, 291
LweI	GCATC	2 cut(s)	82, 187
MaeI	CTAG	1 cut(s)	77
MaeII	ACGT	1 cut(s)	52
MaeIII	GTNAC	1 cut(s)	107
MalI	GATC	1 cut(s)	270
MboI	GATC	1 cut(s)	268
MboII	GAAGA	2 cut(s)	113, 239
MfeI	CAATTG	1 cut(s)	18
MhlI	GDGCHC	1 cut(s)	264
MluCI	AATT	2 cut(s)	18, 313
MnlI	CCTC	6 cut(s)	16, 24, 27, 31, 184, 274
Mph1103I	ATGCAT	1 cut(s)	97
MroXI	GAANNNNTTC	1 cut(s)	166
MseI	TTAA	1 cut(s)	273
MslI	CAYNNNNRTG	1 cut(s)	125
MspCI	CTTAAG	1 cut(s)	272
MspI	CCGG	1 cut(s)	63
MunI	CAATTG	1 cut(s)	18
NdeII	GATC	1 cut(s)	268
NlaIII	CATG	1 cut(s)	214
NmuCI	GTSAC	1 cut(s)	107
NsiI	ATGCAT	1 cut(s)	97
PdmI	GAANNNNTTC	1 cut(s)	166
PflFI	GACNNNGTC	1 cut(s)	113
Ppu21I	YACGTR	1 cut(s)	53
PsyI	GACNNNGTC	1 cut(s)	113
RseI	CAYNNNNRTG	1 cut(s)	125
SaqAI	TTAA	1 cut(s)	273
Sau3AI	GATC	1 cut(s)	268
SduI	GDGCHC	1 cut(s)	264
SetI	ASST	5 cut(s)	42, 55, 145, 153, 285
SfaNI	GCATC	2 cut(s)	82, 187
SmiMI	CAYNNNNRTG	1 cut(s)	125
SmlI	CTYRAG	1 cut(s)	272
SmoI	CTYRAG	1 cut(s)	272
Sse9I	AATT	2 cut(s)	18, 313
SspI	AATATT	1 cut(s)	48
SspMI	CTAG	1 cut(s)	77
TaaI	ACNGT	3 cut(s)	107, 208, 266
TaiI	ACGT	1 cut(s)	55
TasI	AATT	2 cut(s)	18, 313
Tru1I	TTAA	1 cut(s)	273
Tru9I	TTAA	1 cut(s)	273
TscAI	CASTG	1 cut(s)	112
TseFI	GTSAC	1 cut(s)	107
Tsp45I	GTSAC	1 cut(s)	107
TspRI	CASTG	1 cut(s)	112
Tth111I	GACNNNGTC	1 cut(s)	113
Vha464I	CTTAAG	1 cut(s)	272
VneI	GTGCAC	1 cut(s)	260
XmiI	GTMKAC	1 cut(s)	117
XmnI	GAANNNNTTC	1 cut(s)	166
XspI	CTAG	1 cut(s)	77
Zsp2I	ATGCAT	1 cut(s)	97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.