Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8307069.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 853

Gene Structure 853 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8307069.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 719 bp

atgcagtcagaagaaataccatctggacgacagatgatggtatctaatggccagagtggtaccaattcctccaatagcaaggattatgaccccaaaaaagtggatagcttagcaaaatctagtggtagttcaactcaggatccaagttcaaaacaaatggaccttggtagtaagactatagctgaatcaaccaccaccagtagtcgtccttctccaagcccaatgctacctgcaaaatctgaatttctaaccaattctatccccagccctggccaacgaagtcgcaataactctcgttctgatagcttagacagtatcaccgcacccataaggcctcatactggtggtgacattcggtgggatgcaatcaacatggtctctaaaggttcccaactcaatctcagccatttccggcttctcaagcgcctaggctatggagacatcggtagcgtttatctggtagaactccgaggaacaagtgcattttttgccatgaaagtcatggacaaggcatctcttgctagtagaaacaagctattgcgagcacaaacagaaagagagatactcggacttcttgaccacccattcttgcccactctctattcttacttcgagactgacaagttctattgcttggtcatggagtattgtagtggaggtaatctacattccctgcgacagaagcaacctaacaagcattttacagaggaagctgcacg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016020 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0021700 GO:0022414 GO:0022622 GO:0023052 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0035556 GO:0036211 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044706 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051716 GO:0060560 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0071944 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:0140096 GO:1901564 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

240

Amino Acids

26.48

Weight (kDa)

9.3

Isoelectric Point (pI)

60.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	238
Acc65I	GGTACC	1 cut(s)	59
AccB1I	GGYRCC	1 cut(s)	59
AciI	CCGC	1 cut(s)	321
AclWI	GGATC	2 cut(s)	134, 147
AcoI	YGGCCR	2 cut(s)	49, 271
AcsI	RAATTY	1 cut(s)	242
AfaI	GTAC	1 cut(s)	61
AfiI	CCNNNNNNNGG	2 cut(s)	269, 341
AgsI	TTSAA	2 cut(s)	132, 150
AjnI	CCWGG	1 cut(s)	268
AluBI	AGCT	5 cut(s)	108, 182, 306, 535, 713
AluI	AGCT	5 cut(s)	108, 182, 306, 535, 713
Alw21I	GWGCWC	1 cut(s)	547
Alw26I	GTCTC	3 cut(s)	382, 432, 608
AlwI	GGATC	2 cut(s)	134, 147
AoxI	GGCC	3 cut(s)	49, 271, 332
ApeKI	GCWGC	1 cut(s)	713
ApoI	RAATTY	1 cut(s)	242
Asp718I	GGTACC	1 cut(s)	59
AspA2I	CCTAGG	1 cut(s)	427
AspLEI	GCGC	1 cut(s)	426
AspS9I	GGNCC	1 cut(s)	160
AsuHPI	GGTGA	2 cut(s)	310, 359
AvaII	GGWCC	1 cut(s)	160
AvrII	CCTAGG	1 cut(s)	427
BalI	TGGCCA	2 cut(s)	51, 273
BamHI	GGATCC	1 cut(s)	139
BanI	GGYRCC	1 cut(s)	59
BarI	GAAGNNNNNNTAC	2 cut(s)	193, 225
Bbv12I	GWGCWC	1 cut(s)	547
BbvI	GCAGC	1 cut(s)	700
BccI	CCATC	2 cut(s)	28, 31
BciT130I	CCWGG	1 cut(s)	270
BcoDI	GTCTC	3 cut(s)	382, 432, 608
BfaI	CTAG	3 cut(s)	120, 428, 522
BfmI	CTRYAG	1 cut(s)	177
BfoI	RGCGCY	1 cut(s)	427
BfuAI	ACCTGC	1 cut(s)	238
BisI	GCNGC	1 cut(s)	714
BlnI	CCTAGG	1 cut(s)	427
BlpI	GCTNAGC	1 cut(s)	109
BlsI	GCNGC	1 cut(s)	715
Bme1390I	CCNGG	1 cut(s)	270
Bme18I	GGWCC	1 cut(s)	160
BmgT120I	GGNCC	1 cut(s)	160
BmiI	GGNNCC	3 cut(s)	61, 141, 388
BmrFI	CCNGG	1 cut(s)	270
BmsI	GCATC	2 cut(s)	352, 521
BplI	GAGNNNNNCTC	2 cut(s)	549, 581
Bpu1102I	GCTNAGC	1 cut(s)	109
BpuEI	CTTGAG	1 cut(s)	404
BsaI	GGTCTC	1 cut(s)	382
BsaJI	CCNNGG	4 cut(s)	163, 268, 427, 469
Bsc4I	CCNNNNNNNGG	2 cut(s)	269, 341
Bse1I	ACTGG	2 cut(s)	198, 346
BseBI	CCWGG	1 cut(s)	270
BseDI	CCNNGG	4 cut(s)	163, 268, 427, 469
BseGI	GGATG	1 cut(s)	367
BseLI	CCNNNNNNNGG	2 cut(s)	269, 341
BseMII	CTCAG	2 cut(s)	149, 415
BseNI	ACTGG	2 cut(s)	198, 346
BseXI	GCAGC	1 cut(s)	700
BseYI	CCCAGC	1 cut(s)	263
BsgI	GTGCAG	1 cut(s)	699
BshFI	GGCC	3 cut(s)	51, 273, 334
BshNI	GGYRCC	1 cut(s)	59
BsiHKAI	GWGCWC	1 cut(s)	547
BsiSI	CCGG	1 cut(s)	412
BslI	CCNNNNNNNGG	2 cut(s)	269, 341
BsmAI	GTCTC	3 cut(s)	382, 432, 608
BsnI	GGCC	3 cut(s)	51, 273, 334
Bso31I	GGTCTC	1 cut(s)	382
Bsp1286I	GDGCHC	1 cut(s)	547
Bsp143I	GATC	1 cut(s)	139
Bsp1720I	GCTNAGC	1 cut(s)	109
BspACI	CCGC	1 cut(s)	321
BspANI	GGCC	3 cut(s)	51, 273, 334
BspCNI	CTCAG	2 cut(s)	148, 414
BspLI	GGNNCC	3 cut(s)	61, 141, 388
BspMI	ACCTGC	1 cut(s)	238
BspPI	GGATC	2 cut(s)	134, 147
BspT107I	GGYRCC	1 cut(s)	59
BspTNI	GGTCTC	1 cut(s)	382
BsrI	ACTGG	2 cut(s)	198, 346
BssECI	CCNNGG	4 cut(s)	163, 268, 427, 469
BssMI	GATC	1 cut(s)	139
BssT1I	CCWWGG	2 cut(s)	163, 427
Bst2UI	CCWGG	1 cut(s)	270
Bst4CI	ACNGT	1 cut(s)	314
BstAPI	GCANNNNNTGC	2 cut(s)	488, 518
BstC8I	GCNNGC	1 cut(s)	543
BstDEI	CTNAG	4 cut(s)	109, 135, 307, 401
BstF5I	GGATG	1 cut(s)	367
BstH2I	RGCGCY	1 cut(s)	427
BstHHI	GCGC	1 cut(s)	426
BstKTI	GATC	1 cut(s)	142
BstMAI	GTCTC	3 cut(s)	382, 432, 608
BstMBI	GATC	1 cut(s)	139
BstMWI	GCNNNNNNNGC	4 cut(s)	421, 488, 518, 682
BstNI	CCWGG	1 cut(s)	270
BstSCI	CCNGG	1 cut(s)	268
BstSFI	CTRYAG	1 cut(s)	177
BstV1I	GCAGC	1 cut(s)	700
BstX2I	RGATCY	1 cut(s)	139
BstXI	CCANNNNNNTGG	1 cut(s)	100
BstYI	RGATCY	1 cut(s)	139
BsuRI	GGCC	3 cut(s)	51, 273, 334
BtsCI	GGATG	1 cut(s)	367
BveI	ACCTGC	1 cut(s)	238
Cac8I	GCNNGC	1 cut(s)	543
CfoI	GCGC	1 cut(s)	426
Cfr13I	GGNCC	1 cut(s)	160
Csp6I	GTAC	1 cut(s)	60
CviAII	CATG	4 cut(s)	373, 493, 502, 640
CviQI	GTAC	1 cut(s)	60
DdeI	CTNAG	4 cut(s)	109, 135, 307, 401
DpnI	GATC	1 cut(s)	141
DpnII	GATC	1 cut(s)	139
EaeI	YGGCCR	2 cut(s)	49, 271
Eco130I	CCWWGG	2 cut(s)	163, 427
Eco147I	AGGCCT	1 cut(s)	334
Eco31I	GGTCTC	1 cut(s)	382
Eco47I	GGWCC	1 cut(s)	160
EcoRII	CCWGG	1 cut(s)	268
EcoT14I	CCWWGG	2 cut(s)	163, 427
ErhI	CCWWGG	2 cut(s)	163, 427
FaeI	CATG	4 cut(s)	376, 496, 505, 643
FaiI	YATR	9 cut(s)	87, 179, 329, 339, 374, 435, 494, 503, 641
FatI	CATG	4 cut(s)	372, 492, 501, 639
Fnu4HI	GCNGC	1 cut(s)	714
FokI	GGATG	1 cut(s)	374
Fsp4HI	GCNGC	1 cut(s)	714
FspBI	CTAG	3 cut(s)	120, 428, 522
GlaI	GCGC	1 cut(s)	425
GluI	GCNGC	1 cut(s)	714
GsaI	CCCAGC	1 cut(s)	267
HaeII	RGCGCY	1 cut(s)	427
HaeIII	GGCC	3 cut(s)	51, 273, 334
HapII	CCGG	1 cut(s)	412
HhaI	GCGC	1 cut(s)	426
Hin1II	CATG	4 cut(s)	376, 496, 505, 643
Hin6I	GCGC	1 cut(s)	424
HinP1I	GCGC	1 cut(s)	424
HinfI	GANTC	1 cut(s)	185
HpaII	CCGG	1 cut(s)	412
HphI	GGTGA	2 cut(s)	310, 359
Hpy188I	TCNGA	5 cut(s)	10, 241, 301, 470, 569
Hpy188III	TCNNGA	4 cut(s)	24, 137, 575, 613
HpyAV	CCTTC	1 cut(s)	219
HpyCH4III	ACNGT	1 cut(s)	314
HpyCH4V	TGCA	5 cut(s)	4, 233, 365, 482, 716
HpyF10VI	GCNNNNNNNGC	4 cut(s)	421, 488, 518, 682
HpyF3I	CTNAG	4 cut(s)	109, 135, 307, 401
Hsp92II	CATG	4 cut(s)	376, 496, 505, 643
HspAI	GCGC	1 cut(s)	424
KpnI	GGTACC	1 cut(s)	63
Kzo9I	GATC	1 cut(s)	139
Lsp1109I	GCAGC	1 cut(s)	700
LweI	GCATC	2 cut(s)	352, 521
MaeI	CTAG	3 cut(s)	120, 428, 522
MaeIII	GTNAC	1 cut(s)	347
MalI	GATC	1 cut(s)	141
MboI	GATC	1 cut(s)	139
MboII	GAAGA	1 cut(s)	23
MflI	RGATCY	1 cut(s)	139
MhlI	GDGCHC	1 cut(s)	547
MlsI	TGGCCA	2 cut(s)	51, 273
MluCI	AATT	3 cut(s)	64, 242, 253
MluNI	TGGCCA	2 cut(s)	51, 273
MnlI	CCTC	5 cut(s)	79, 345, 464, 650, 700
Mox20I	TGGCCA	2 cut(s)	51, 273
MscI	TGGCCA	2 cut(s)	51, 273
MslI	CAYNNNNRTG	1 cut(s)	342
Msp20I	TGGCCA	2 cut(s)	51, 273
MspI	CCGG	1 cut(s)	412
MspR9I	CCNGG	1 cut(s)	270
MvaI	CCWGG	1 cut(s)	270
MwoI	GCNNNNNNNGC	4 cut(s)	421, 488, 518, 682
NdeII	GATC	1 cut(s)	139
NlaIII	CATG	4 cut(s)	376, 496, 505, 643
NlaIV	GGNNCC	3 cut(s)	61, 141, 388
NmuCI	GTSAC	1 cut(s)	347
PceI	AGGCCT	1 cut(s)	334
PfeI	GAWTC	1 cut(s)	185
PkrI	GCNGC	1 cut(s)	715
Psp6I	CCWGG	1 cut(s)	268
PspFI	CCCAGC	1 cut(s)	263
PspGI	CCWGG	1 cut(s)	268
PspN4I	GGNNCC	3 cut(s)	61, 141, 388
PspPI	GGNCC	1 cut(s)	160
PsuI	RGATCY	1 cut(s)	139
RsaI	GTAC	1 cut(s)	61
RsaNI	GTAC	1 cut(s)	60
RseI	CAYNNNNRTG	1 cut(s)	342
SatI	GCNGC	1 cut(s)	714
Sau3AI	GATC	1 cut(s)	139
Sau96I	GGNCC	1 cut(s)	160
ScrFI	CCNGG	1 cut(s)	270
SduI	GDGCHC	1 cut(s)	547
SfaNI	GCATC	2 cut(s)	352, 521
SfcI	CTRYAG	1 cut(s)	177
SinI	GGWCC	1 cut(s)	160
SmiMI	CAYNNNNRTG	1 cut(s)	342
SmlI	CTYRAG	1 cut(s)	419
SmoI	CTYRAG	1 cut(s)	419
Sse9I	AATT	3 cut(s)	64, 242, 253
SseBI	AGGCCT	1 cut(s)	334
SsiI	CCGC	1 cut(s)	321
SspMI	CTAG	3 cut(s)	120, 428, 522
StuI	AGGCCT	1 cut(s)	334
StyD4I	CCNGG	1 cut(s)	268
StyI	CCWWGG	2 cut(s)	163, 427
TaaI	ACNGT	1 cut(s)	314
TaqI	TCGA	1 cut(s)	612
TasI	AATT	3 cut(s)	64, 242, 253
TfiI	GAWTC	1 cut(s)	185
TseFI	GTSAC	1 cut(s)	347
TseI	GCWGC	1 cut(s)	713
Tsp45I	GTSAC	1 cut(s)	347
TspDTI	ATGAA	1 cut(s)	509
VpaK11BI	GGWCC	1 cut(s)	160
XapI	RAATTY	1 cut(s)	242
XcmI	CCANNNNNNNNNTGG	1 cut(s)	499
XmaJI	CCTAGG	1 cut(s)	427
XspI	CTAG	3 cut(s)	120, 428, 522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.