Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8323469.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

33 .. 827

Gene Structure 795 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8323469.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

atggggcagtgctacggcaagactattccgacgacggcggataaggacccgacggagaccgggacgactgtcaccaccggcgcgacgaccgtcacgacaatcaggacctccgtccagcacccgacgccgtcgcaggaggaggagcagcagaacggcgccgggagcgtgaagagcacgccggcgcggacgtcgatccctcagccgagcccctggccgagtccctacccgcacggcgtgtctgccagcccgctgccggggggagtgtcgccgtcgccggcgaggtcgtcgacgccggggaggttttttcggaggaggttcgcgccgccgtcgccggcgaagcacataaaggcgtcgctggcgaagcggttcgggcagaagccgaaggagagcccgattccggaggagcagggagttgagcaggagcagtcgctggataagagctttgggtatggtaagaattttggagctaagtatgagcttgggaaagaggtcgggcgagggcattttggtcatacttgctccggtagaggcaagaaaggcgagctcaaggacaagcctttggccgttaagatcatctccaaagccaaggtacaattcaattcaattatatgctatttaattgttactatttttgaacgttttgattctggaatgtatttctgtttcggtagaaaatgtggaacagtgaacattgaaggtaacaattctatggactgtatgcaattattgtcatttcggagctatagtgcgaaatgtgaagcgtttctgaataaaggatgcctgtccggggtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010150 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0090693 GO:0097305 GO:0097306 GO:0099402 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

Pkinase

Protein Analysis

264

Amino Acids

28.52

Weight (kDa)

9.49

Isoelectric Point (pI)

49.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	191
AccB1I	GGYRCC	1 cut(s)	155
AccI	GTMKAC	1 cut(s)	287
AccII	CGCG	3 cut(s)	83, 184, 320
AccIII	TCCGGA	1 cut(s)	397
AciI	CCGC	6 cut(s)	38, 184, 227, 248, 323, 364
AclI	AACGTT	1 cut(s)	637
AclWI	GGATC	1 cut(s)	187
AcoI	YGGCCR	2 cut(s)	212, 561
AcsI	RAATTY	1 cut(s)	457
AcyI	GRCGYC	5 cut(s)	125, 156, 188, 290, 350
AdeI	CACNNNGTG	1 cut(s)	235
AfaI	GTAC	1 cut(s)	591
AfiI	CCNNNNNNNGG	4 cut(s)	253, 254, 397, 787
AgsI	TTSAA	4 cut(s)	598, 603, 635, 695
AjnI	CCWGG	1 cut(s)	209
AjuI	GAANNNNNNNTTGG	2 cut(s)	578, 610
AluBI	AGCT	5 cut(s)	441, 467, 478, 544, 741
AluI	AGCT	5 cut(s)	441, 467, 478, 544, 741
Alw21I	GWGCWC	2 cut(s)	176, 546
Alw26I	GTCTC	1 cut(s)	50
AlwI	GGATC	1 cut(s)	187
AlwNI	CAGNNNCTG	1 cut(s)	430
Aor13HI	TCCGGA	1 cut(s)	397
AoxI	GGCC	2 cut(s)	212, 561
ApeKI	GCWGC	2 cut(s)	145, 250
ApoI	RAATTY	1 cut(s)	457
Asp700I	GAANNNNTTC	2 cut(s)	365, 762
AspLEI	GCGC	4 cut(s)	83, 158, 184, 322
AspS9I	GGNCC	2 cut(s)	46, 105
AsuC2I	CCSGG	5 cut(s)	61, 160, 255, 294, 787
AsuHPI	GGTGA	1 cut(s)	64
AvaII	GGWCC	2 cut(s)	46, 105
BanI	GGYRCC	1 cut(s)	155
BanII	GRGCYC	3 cut(s)	209, 392, 546
Bbv12I	GWGCWC	2 cut(s)	176, 546
BbvCI	CCTCAGC	1 cut(s)	198
BbvI	GCAGC	2 cut(s)	157, 237
BceAI	ACGGC	8 cut(s)	31, 51, 112, 169, 247, 253, 310, 548
BciT130I	CCWGG	1 cut(s)	211
BcnI	CCSGG	5 cut(s)	61, 160, 255, 294, 787
BcoDI	GTCTC	1 cut(s)	50
BfmI	CTRYAG	1 cut(s)	742
BfoI	RGCGCY	1 cut(s)	159
BisI	GCNGC	3 cut(s)	146, 251, 323
BlsI	GCNGC	3 cut(s)	147, 252, 324
Bme1390I	CCNGG	6 cut(s)	61, 160, 211, 255, 294, 787
Bme18I	GGWCC	2 cut(s)	46, 105
BmgT120I	GGNCC	2 cut(s)	46, 105
BmiI	GGNNCC	2 cut(s)	48, 157
BmrFI	CCNGG	6 cut(s)	61, 160, 211, 255, 294, 787
BmsI	GCATC	1 cut(s)	767
BoxI	GACNNNNGTC	3 cut(s)	68, 89, 110
Bpu10I	CCTNAGC	1 cut(s)	198
BpuEI	CTTGAG	1 cut(s)	530
BpuMI	CCSGG	5 cut(s)	61, 160, 255, 294, 787
BsaHI	GRCGYC	5 cut(s)	125, 156, 188, 290, 350
BsaI	GGTCTC	1 cut(s)	50
BsaJI	CCNNGG	5 cut(s)	209, 254, 293, 585, 786
BsaWI	WCCGGW	2 cut(s)	397, 521
BsaXI	ACNNNNNCTCC	2 cut(s)	730, 760
Bsc4I	CCNNNNNNNGG	4 cut(s)	253, 254, 397, 787
Bse118I	RCCGGY	4 cut(s)	77, 178, 274, 331
BseAI	TCCGGA	1 cut(s)	397
BseBI	CCWGG	1 cut(s)	211
BseDI	CCNNGG	5 cut(s)	209, 254, 293, 585, 786
BseGI	GGATG	1 cut(s)	782
BseLI	CCNNNNNNNGG	4 cut(s)	253, 254, 397, 787
BseMII	CTCAG	1 cut(s)	212
BseRI	GAGGAG	4 cut(s)	152, 155, 325, 416
BseXI	GCAGC	2 cut(s)	157, 237
Bsh1236I	CGCG	3 cut(s)	83, 184, 320
Bsh1285I	CGRYCG	1 cut(s)	90
BshFI	GGCC	2 cut(s)	214, 563
BshNI	GGYRCC	1 cut(s)	155
BsiEI	CGRYCG	1 cut(s)	90
BsiHKAI	GWGCWC	2 cut(s)	176, 546
BslFI	GGGAC	2 cut(s)	76, 204
BslI	CCNNNNNNNGG	4 cut(s)	253, 254, 397, 787
BsmAI	GTCTC	1 cut(s)	50
BsmFI	GGGAC	2 cut(s)	76, 204
BsnI	GGCC	2 cut(s)	214, 563
Bso31I	GGTCTC	1 cut(s)	50
Bsp1286I	GDGCHC	4 cut(s)	176, 209, 392, 546
Bsp13I	TCCGGA	1 cut(s)	397
Bsp143I	GATC	2 cut(s)	192, 570
BspACI	CCGC	6 cut(s)	38, 184, 227, 248, 323, 364
BspANI	GGCC	2 cut(s)	214, 563
BspCNI	CTCAG	1 cut(s)	211
BspEI	TCCGGA	1 cut(s)	397
BspFNI	CGCG	3 cut(s)	83, 184, 320
BspLI	GGNNCC	2 cut(s)	48, 157
BspPI	GGATC	1 cut(s)	187
BspQI	GCTCTTC	1 cut(s)	164
BspT107I	GGYRCC	1 cut(s)	155
BspTNI	GGTCTC	1 cut(s)	50
BsrFI	RCCGGY	4 cut(s)	77, 178, 274, 331
BssAI	RCCGGY	4 cut(s)	77, 178, 274, 331
BssECI	CCNNGG	5 cut(s)	209, 254, 293, 585, 786
BssMI	GATC	2 cut(s)	192, 570
BssNI	GRCGYC	5 cut(s)	125, 156, 188, 290, 350
BssT1I	CCWWGG	1 cut(s)	585
Bst2UI	CCWGG	1 cut(s)	211
Bst4CI	ACNGT	4 cut(s)	70, 91, 685, 716
Bst6I	CTCTTC	1 cut(s)	164
BstACI	GRCGYC	5 cut(s)	125, 156, 188, 290, 350
BstC8I	GCNNGC	8 cut(s)	176, 180, 244, 248, 276, 333, 357, 542
BstDEI	CTNAG	2 cut(s)	198, 468
BstF5I	GGATG	1 cut(s)	782
BstFNI	CGCG	3 cut(s)	83, 184, 320
BstH2I	RGCGCY	1 cut(s)	159
BstHHI	GCGC	4 cut(s)	83, 158, 184, 322
BstKTI	GATC	2 cut(s)	195, 573
BstMAI	GTCTC	1 cut(s)	50
BstMBI	GATC	2 cut(s)	192, 570
BstMCI	CGRYCG	1 cut(s)	90
BstMWI	GCNNNNNNNGC	9 cut(s)	124, 162, 171, 328, 337, 356, 361, 370, 537
BstNI	CCWGG	1 cut(s)	211
BstPAI	GACNNNNGTC	3 cut(s)	68, 89, 110
BstSCI	CCNGG	6 cut(s)	59, 158, 209, 253, 292, 785
BstSFI	CTRYAG	1 cut(s)	742
BstUI	CGCG	3 cut(s)	83, 184, 320
BstV1I	GCAGC	2 cut(s)	157, 237
BsuRI	GGCC	2 cut(s)	214, 563
BtsCI	GGATG	1 cut(s)	782
BtsI	GCAGTG	1 cut(s)	14
BtsIMutI	CAGTG	2 cut(s)	14, 690
Cac8I	GCNNGC	8 cut(s)	176, 180, 244, 248, 276, 333, 357, 542
CaiI	CAGNNNCTG	1 cut(s)	430
CfoI	GCGC	4 cut(s)	83, 158, 184, 322
Cfr10I	RCCGGY	4 cut(s)	77, 178, 274, 331
Cfr13I	GGNCC	2 cut(s)	46, 105
CseI	GACGC	3 cut(s)	133, 298, 339
Csp6I	GTAC	1 cut(s)	590
CviQI	GTAC	1 cut(s)	590
DdeI	CTNAG	2 cut(s)	198, 468
DinI	GGCGCC	1 cut(s)	157
DpnI	GATC	2 cut(s)	194, 572
DpnII	GATC	2 cut(s)	192, 570
DraIII	CACNNNGTG	1 cut(s)	235
EaeI	YGGCCR	2 cut(s)	212, 561
Eam1104I	CTCTTC	1 cut(s)	164
EarI	CTCTTC	1 cut(s)	164
EciI	GGCGGA	1 cut(s)	53
Ecl136II	GAGCTC	1 cut(s)	544
Eco130I	CCWWGG	1 cut(s)	585
Eco24I	GRGCYC	3 cut(s)	209, 392, 546
Eco31I	GGTCTC	1 cut(s)	50
Eco47I	GGWCC	2 cut(s)	46, 105
Eco53kI	GAGCTC	1 cut(s)	544
EcoICRI	GAGCTC	1 cut(s)	544
EcoO109I	RGGNCCY	2 cut(s)	46, 105
EcoRII	CCWGG	1 cut(s)	209
EcoT14I	CCWWGG	1 cut(s)	585
EcoT38I	GRGCYC	3 cut(s)	209, 392, 546
EgeI	GGCGCC	1 cut(s)	157
EheI	GGCGCC	1 cut(s)	157
ErhI	CCWWGG	1 cut(s)	585
FaiI	YATR	9 cut(s)	344, 450, 474, 513, 608, 610, 710, 719, 744
FaqI	GGGAC	2 cut(s)	76, 204
FauI	CCCGC	2 cut(s)	234, 255
FblI	GTMKAC	1 cut(s)	287
Fnu4HI	GCNGC	3 cut(s)	146, 251, 323
FokI	GGATG	1 cut(s)	789
FriOI	GRGCYC	3 cut(s)	209, 392, 546
Fsp4HI	GCNGC	3 cut(s)	146, 251, 323
GlaI	GCGC	4 cut(s)	82, 157, 183, 321
GluI	GCNGC	3 cut(s)	146, 251, 323
HaeII	RGCGCY	1 cut(s)	159
HaeIII	GGCC	2 cut(s)	214, 563
HgaI	GACGC	3 cut(s)	133, 298, 339
HhaI	GCGC	4 cut(s)	83, 158, 184, 322
Hin1I	GRCGYC	5 cut(s)	125, 156, 188, 290, 350
Hin6I	GCGC	4 cut(s)	81, 156, 182, 320
HinP1I	GCGC	4 cut(s)	81, 156, 182, 320
HincII	GTYRAC	1 cut(s)	288
HindII	GTYRAC	1 cut(s)	288
HinfI	GANTC	3 cut(s)	217, 394, 644
HphI	GGTGA	1 cut(s)	64
Hpy166II	GTNNAC	2 cut(s)	288, 688
Hpy188I	TCNGA	4 cut(s)	30, 309, 738, 768
Hpy188III	TCNNGA	4 cut(s)	94, 103, 398, 648
Hpy8I	GTNNAC	2 cut(s)	288, 688
HpyAV	CCTTC	2 cut(s)	376, 689
HpyCH4III	ACNGT	4 cut(s)	70, 91, 685, 716
HpyCH4IV	ACGT	2 cut(s)	188, 637
HpyCH4V	TGCA	1 cut(s)	721
HpyF10VI	GCNNNNNNNGC	9 cut(s)	124, 162, 171, 328, 337, 356, 361, 370, 537
HpyF3I	CTNAG	2 cut(s)	198, 468
HpySE526I	ACGT	2 cut(s)	188, 637
Hsp92I	GRCGYC	5 cut(s)	125, 156, 188, 290, 350
HspAI	GCGC	4 cut(s)	81, 156, 182, 320
KasI	GGCGCC	1 cut(s)	155
Kpn2I	TCCGGA	1 cut(s)	397
KroI	GCCGGC	3 cut(s)	178, 274, 331
KroNI	GCCGGC	3 cut(s)	180, 276, 333
Kzo9I	GATC	2 cut(s)	192, 570
LguI	GCTCTTC	1 cut(s)	164
LmnI	GCTCC	7 cut(s)	142, 162, 403, 421, 464, 524, 738
Lsp1109I	GCAGC	2 cut(s)	157, 237
LweI	GCATC	1 cut(s)	767
MaeII	ACGT	2 cut(s)	188, 637
MaeIII	GTNAC	4 cut(s)	70, 91, 622, 698
MalI	GATC	2 cut(s)	194, 572
MboI	GATC	2 cut(s)	192, 570
MboII	GAAGA	1 cut(s)	181
MhlI	GDGCHC	4 cut(s)	176, 209, 392, 546
MluCI	AATT	7 cut(s)	457, 593, 598, 603, 618, 703, 722
Mly113I	GGCGCC	1 cut(s)	156
MlyI	GAGTC	1 cut(s)	226
MmeI	TCCRAC	1 cut(s)	53
MreI	CGCCGGCG	3 cut(s)	178, 274, 331
MroI	TCCGGA	1 cut(s)	397
MroNI	GCCGGC	3 cut(s)	178, 274, 331
MroXI	GAANNNNTTC	2 cut(s)	365, 762
MseI	TTAA	3 cut(s)	567, 617, 793
MspA1I	CMGCKG	1 cut(s)	250
MspR9I	CCNGG	6 cut(s)	61, 160, 211, 255, 294, 787
MvaI	CCWGG	1 cut(s)	211
MvnI	CGCG	3 cut(s)	83, 184, 320
MwoI	GCNNNNNNNGC	9 cut(s)	124, 162, 171, 328, 337, 356, 361, 370, 537
NaeI	GCCGGC	3 cut(s)	180, 276, 333
NarI	GGCGCC	1 cut(s)	156
NciI	CCSGG	5 cut(s)	61, 160, 255, 294, 787
NdeII	GATC	2 cut(s)	192, 570
NgoMIV	GCCGGC	3 cut(s)	178, 274, 331
NlaIV	GGNNCC	2 cut(s)	48, 157
NmeAIII	GCCGAG	2 cut(s)	228, 240
NmuCI	GTSAC	2 cut(s)	70, 91
PciSI	GCTCTTC	1 cut(s)	164
PcsI	WCGNNNNNNNCGW	1 cut(s)	92
PdiI	GCCGGC	3 cut(s)	180, 276, 333
PdmI	GAANNNNTTC	2 cut(s)	365, 762
PfeI	GAWTC	2 cut(s)	394, 644
PflFI	GACNNNGTC	1 cut(s)	127
PkrI	GCNGC	3 cut(s)	147, 252, 324
PleI	GAGTC	1 cut(s)	225
PluTI	GGCGCC	1 cut(s)	159
PpsI	GAGTC	1 cut(s)	225
PpuMI	RGGWCCY	2 cut(s)	46, 105
PshAI	GACNNNNGTC	3 cut(s)	68, 89, 110
Psp124BI	GAGCTC	1 cut(s)	546
Psp1406I	AACGTT	1 cut(s)	637
Psp5II	RGGWCCY	2 cut(s)	46, 105
Psp6I	CCWGG	1 cut(s)	209
PspGI	CCWGG	1 cut(s)	209
PspN4I	GGNNCC	2 cut(s)	48, 157
PspPI	GGNCC	2 cut(s)	46, 105
PspPPI	RGGWCCY	2 cut(s)	46, 105
PstNI	CAGNNNCTG	1 cut(s)	430
PsyI	GACNNNGTC	1 cut(s)	127
RsaI	GTAC	1 cut(s)	591
RsaNI	GTAC	1 cut(s)	590
SacI	GAGCTC	1 cut(s)	546
SalI	GTCGAC	1 cut(s)	286
SapI	GCTCTTC	1 cut(s)	164
SaqAI	TTAA	3 cut(s)	567, 617, 793
SatI	GCNGC	3 cut(s)	146, 251, 323
Sau3AI	GATC	2 cut(s)	192, 570
Sau96I	GGNCC	2 cut(s)	46, 105
SchI	GAGTC	1 cut(s)	226
ScrFI	CCNGG	6 cut(s)	61, 160, 211, 255, 294, 787
SduI	GDGCHC	4 cut(s)	176, 209, 392, 546
SfaNI	GCATC	1 cut(s)	767
SfcI	CTRYAG	1 cut(s)	742
SfoI	GGCGCC	1 cut(s)	157
SgrAI	CRCCGGYG	4 cut(s)	77, 178, 274, 331
SgrDI	CGTCGACG	1 cut(s)	286
SinI	GGWCC	2 cut(s)	46, 105
SmlI	CTYRAG	1 cut(s)	545
SmoI	CTYRAG	1 cut(s)	545
Sse9I	AATT	7 cut(s)	457, 593, 598, 603, 618, 703, 722
SsiI	CCGC	6 cut(s)	38, 184, 227, 248, 323, 364
SspDI	GGCGCC	1 cut(s)	155
SstI	GAGCTC	1 cut(s)	546
StyD4I	CCNGG	6 cut(s)	59, 158, 209, 253, 292, 785
StyI	CCWWGG	1 cut(s)	585
TaaI	ACNGT	4 cut(s)	70, 91, 685, 716
TaiI	ACGT	2 cut(s)	191, 640
TaqI	TCGA	2 cut(s)	191, 287
TasI	AATT	7 cut(s)	457, 593, 598, 603, 618, 703, 722
TauI	GCSGC	1 cut(s)	325
TfiI	GAWTC	2 cut(s)	394, 644
Tru1I	TTAA	3 cut(s)	567, 617, 793
Tru9I	TTAA	3 cut(s)	567, 617, 793
TscAI	CASTG	2 cut(s)	14, 690
TseFI	GTSAC	2 cut(s)	70, 91
TseI	GCWGC	2 cut(s)	145, 250
Tsp45I	GTSAC	2 cut(s)	70, 91
TspGWI	ACGGA	2 cut(s)	68, 100
TspRI	CASTG	2 cut(s)	14, 690
Tth111I	GACNNNGTC	1 cut(s)	127
VpaK11BI	GGWCC	2 cut(s)	46, 105
XapI	RAATTY	1 cut(s)	457
XmiI	GTMKAC	1 cut(s)	287
XmnI	GAANNNNTTC	2 cut(s)	365, 762
ZraI	GACGTC	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.