Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8324287.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

140 .. 956

Gene Structure 817 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8324287.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 413 bp

atgggccaagatataatcaagcagttaaagggaatgaatgggcaggcagtaccagttggatatgggagtcctaacagtgatgctgggcacgtagtccttggatcatcaaaaaggtgcagttttcaagcacaggaaaagctatccagaccatttgtcagtttgggccaagatgtaacaaataggttaaagttcaagttaaagcgaatggaaatgcgatcacggggatatgagagtcccaaggatgatgctagacaggtagttcttgaagcatcaaggaggggcagttttcttcaagcaccggaaaagcatgctaaaacattggacggtacgggccaagatggacgtgcagtaccagttggattggacagtcccaagggtgatgctacacacccagtccttgaagcatcaaagag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

137

Amino Acids

14.82

Weight (kDa)

9.76

Isoelectric Point (pI)

47.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	109
AfaI	GTAC	3 cut(s)	51, 328, 351
AgsI	TTSAA	5 cut(s)	125, 193, 266, 293, 401
AhdI	GACNNNNNGTC	1 cut(s)	152
AjiI	CACGTC	1 cut(s)	344
AluBI	AGCT	1 cut(s)	139
AluI	AGCT	1 cut(s)	139
AlwI	GGATC	1 cut(s)	109
AoxI	GGCC	3 cut(s)	4, 163, 331
AspS9I	GGNCC	3 cut(s)	4, 163, 331
AsuHPI	GGTGA	1 cut(s)	389
BaeGI	GKGCMC	1 cut(s)	90
BccI	CCATC	1 cut(s)	332
BfaI	CTAG	1 cut(s)	249
BmeRI	GACNNNNNGTC	1 cut(s)	152
BmgBI	CACGTC	1 cut(s)	344
BmgT120I	GGNCC	3 cut(s)	4, 163, 331
BmrI	ACTGGG	1 cut(s)	386
BmsI	GCATC	4 cut(s)	70, 235, 278, 370
BmuI	ACTGGG	1 cut(s)	386
BsaAI	YACGTR	1 cut(s)	91
BsaJI	CCNNGG	3 cut(s)	97, 237, 372
BsaWI	WCCGGW	1 cut(s)	298
BsaXI	ACNNNNNCTCC	2 cut(s)	268, 298
Bse1I	ACTGG	3 cut(s)	53, 353, 392
BseDI	CCNNGG	3 cut(s)	97, 237, 372
BseGI	GGATG	1 cut(s)	247
BseNI	ACTGG	3 cut(s)	53, 353, 392
BseSI	GKGCMC	1 cut(s)	90
BseYI	CCCAGC	1 cut(s)	83
BsgI	GTGCAG	2 cut(s)	136, 366
BshFI	GGCC	3 cut(s)	6, 165, 333
BsiSI	CCGG	1 cut(s)	299
BslFI	GGGAC	2 cut(s)	219, 354
BsmFI	GGGAC	2 cut(s)	219, 354
BsnI	GGCC	3 cut(s)	6, 165, 333
Bsp1286I	GDGCHC	1 cut(s)	90
Bsp143I	GATC	2 cut(s)	101, 215
BspANI	GGCC	3 cut(s)	6, 165, 333
BspPI	GGATC	1 cut(s)	109
BsrI	ACTGG	3 cut(s)	53, 353, 392
BssECI	CCNNGG	3 cut(s)	97, 237, 372
BssMI	GATC	2 cut(s)	101, 215
BssT1I	CCWWGG	3 cut(s)	97, 237, 372
Bst4CI	ACNGT	3 cut(s)	77, 326, 368
BstBAI	YACGTR	1 cut(s)	91
BstC8I	GCNNGC	2 cut(s)	45, 309
BstF5I	GGATG	1 cut(s)	247
BstKTI	GATC	2 cut(s)	104, 218
BstMBI	GATC	2 cut(s)	101, 215
BstNSI	RCATGY	1 cut(s)	311
BstSLI	GKGCMC	1 cut(s)	90
BsuRI	GGCC	3 cut(s)	6, 165, 333
BtrI	CACGTC	1 cut(s)	344
BtsCI	GGATG	1 cut(s)	247
BtsIMutI	CAGTG	1 cut(s)	82
Cac8I	GCNNGC	2 cut(s)	45, 309
Cfr13I	GGNCC	3 cut(s)	4, 163, 331
Csp6I	GTAC	3 cut(s)	50, 327, 350
CviAII	CATG	1 cut(s)	308
CviJI	RGCY	4 cut(s)	6, 139, 165, 333
CviKI_1	RGCY	4 cut(s)	6, 139, 165, 333
CviQI	GTAC	3 cut(s)	50, 327, 350
DpnI	GATC	2 cut(s)	103, 217
DpnII	GATC	2 cut(s)	101, 215
DriI	GACNNNNNGTC	1 cut(s)	152
Eam1105I	GACNNNNNGTC	1 cut(s)	152
Eco130I	CCWWGG	3 cut(s)	97, 237, 372
EcoT14I	CCWWGG	3 cut(s)	97, 237, 372
ErhI	CCWWGG	3 cut(s)	97, 237, 372
FaeI	CATG	1 cut(s)	311
FaiI	YATR	4 cut(s)	14, 63, 228, 309
FaqI	GGGAC	2 cut(s)	219, 354
FatI	CATG	1 cut(s)	307
FokI	GGATG	1 cut(s)	254
FspBI	CTAG	1 cut(s)	249
GsaI	CCCAGC	1 cut(s)	87
HaeIII	GGCC	3 cut(s)	6, 165, 333
HapII	CCGG	1 cut(s)	299
Hin1II	CATG	1 cut(s)	311
HinfI	GANTC	2 cut(s)	67, 232
HpaII	CCGG	1 cut(s)	299
HphI	GGTGA	1 cut(s)	389
Hpy188III	TCNNGA	2 cut(s)	144, 263
HpyCH4III	ACNGT	3 cut(s)	77, 326, 368
HpyCH4IV	ACGT	2 cut(s)	90, 343
HpyCH4V	TGCA	2 cut(s)	117, 347
HpySE526I	ACGT	2 cut(s)	90, 343
Hsp92II	CATG	1 cut(s)	311
Kzo9I	GATC	2 cut(s)	101, 215
LpnPI	CCDG	9 cut(s)	29, 66, 69, 116, 157, 239, 312, 366, 405
LweI	GCATC	4 cut(s)	70, 235, 278, 370
MaeI	CTAG	1 cut(s)	249
MaeII	ACGT	2 cut(s)	90, 343
MaeIII	GTNAC	1 cut(s)	172
MalI	GATC	2 cut(s)	103, 217
MboI	GATC	2 cut(s)	101, 215
MboII	GAAGA	1 cut(s)	281
MhlI	GDGCHC	1 cut(s)	90
MlyI	GAGTC	2 cut(s)	76, 241
MmeI	TCCRAC	2 cut(s)	37, 337
MnlI	CCTC	1 cut(s)	270
MseI	TTAA	3 cut(s)	26, 185, 197
MspI	CCGG	1 cut(s)	299
NdeII	GATC	2 cut(s)	101, 215
NlaIII	CATG	1 cut(s)	311
NspI	RCATGY	1 cut(s)	311
PaeI	GCATGC	1 cut(s)	311
PleI	GAGTC	2 cut(s)	75, 240
PpsI	GAGTC	2 cut(s)	75, 240
Ppu21I	YACGTR	1 cut(s)	91
PspFI	CCCAGC	1 cut(s)	83
PspPI	GGNCC	3 cut(s)	4, 163, 331
RsaI	GTAC	3 cut(s)	51, 328, 351
RsaNI	GTAC	3 cut(s)	50, 327, 350
SaqAI	TTAA	3 cut(s)	26, 185, 197
Sau3AI	GATC	2 cut(s)	101, 215
Sau96I	GGNCC	3 cut(s)	4, 163, 331
SchI	GAGTC	2 cut(s)	76, 241
SduI	GDGCHC	1 cut(s)	90
SetI	ASST	6 cut(s)	93, 116, 141, 185, 258, 346
SfaNI	GCATC	4 cut(s)	70, 235, 278, 370
SphI	GCATGC	1 cut(s)	311
SspMI	CTAG	1 cut(s)	249
StyI	CCWWGG	3 cut(s)	97, 237, 372
TaaI	ACNGT	3 cut(s)	77, 326, 368
TaiI	ACGT	2 cut(s)	93, 346
Tru1I	TTAA	3 cut(s)	26, 185, 197
Tru9I	TTAA	3 cut(s)	26, 185, 197
TscAI	CASTG	1 cut(s)	82
TspDTI	ATGAA	1 cut(s)	50
TspRI	CASTG	1 cut(s)	82
XceI	RCATGY	1 cut(s)	311
XspI	CTAG	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.