Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8327185.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 965

Gene Structure 965 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8327185.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 965 bp

atcgacgcctataacaacaacttcaatggcccacttcccgtcgagctcatcagtctcaaaaatctcaaatatcttcatctgggcgggaactacttcaccggcccgattcccgacaattactccgagattcagagcttggagtatttgggcctcaacggaatcggcctcagtggaaagtttccggccagtctgtcacgtttgaagaatctcaaggaaatgtacgtcggctattacaatacttacgacggcggaattcctccggagttgggatcgttgagttcgttacggattctggacatggctagctgtaatctcaccggcaccattcccataagcctaagtaatttgaagcatttgatctctctatttcttcaaattaaccaactcactggtttcatacctccccaactctctaccctgcccagcctcatgtctctggatctttccataaactcgctcaccggagagataccggcgtcgttctcggaactgaagaacattacgctcatcaatctgtacaagaacaatctctatggccccattcccaaatttgttggtgactttcctcatctcgaggtgcttcaggtgtgggagaacaactttacttacgagctgccggagaatctcggccgcagtgggaggcttaaagatctcgacgtcaccggaaaccacttcaccgggctgattcctcgggatttgtgcaagggagggatgttgaggacgctgatactgatggataatcacttctttggccccattcctgaagagttaggccagtgcaagtcgctcatcaagatcagaatggtgaagaacacactcacggggactattccggcagggatgtttagtttacctaatgtgaatatcattgagctcaatgataattacttgtctggccaacttccggcgcaaatgtcagcaggctcactcggaatcctaggactttctgggaatcaaatttccgg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000325 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009506 GO:0009791 GO:0009888 GO:0009908 GO:0009909 GO:0009934 GO:0009987 GO:0010073 GO:0010075 GO:0010080 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022414 GO:0022603 GO:0030054 GO:0032501 GO:0032502 GO:0033612 GO:0036211 GO:0036289 GO:0040008 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048608 GO:0048638 GO:0048731 GO:0048831 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0051239 GO:0055044 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0090567 GO:0140096 GO:1901564 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

322

Amino Acids

35.25

Weight (kDa)

5.75

Isoelectric Point (pI)

30.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	660
AccB1I	GGYRCC	1 cut(s)	320
AccIII	TCCGGA	1 cut(s)	259
AciI	CCGC	3 cut(s)	84, 249, 631
AclWI	GGATC	2 cut(s)	277, 447
AcoI	YGGCCR	3 cut(s)	183, 628, 895
AcsI	RAATTY	3 cut(s)	252, 548, 957
AcuI	CTGAAG	3 cut(s)	512, 566, 783
AcyI	GRCGYC	3 cut(s)	6, 476, 657
AfaI	GTAC	2 cut(s)	221, 518
AfiI	CCNNNNNNNGG	2 cut(s)	266, 904
AgsI	TTSAA	4 cut(s)	25, 202, 349, 374
AluBI	AGCT	5 cut(s)	46, 135, 306, 613, 874
AluI	AGCT	5 cut(s)	46, 135, 306, 613, 874
Alw21I	GWGCWC	2 cut(s)	48, 876
Alw26I	GTCTC	2 cut(s)	59, 438
AlwI	GGATC	2 cut(s)	277, 447
Ama87I	CYCGRG	2 cut(s)	572, 690
Aor13HI	TCCGGA	1 cut(s)	259
ApeKI	GCWGC	1 cut(s)	613
ApoI	RAATTY	3 cut(s)	252, 548, 957
Asp700I	GAANNNNTTC	1 cut(s)	92
AspA2I	CCTAGG	1 cut(s)	937
AspLEI	GCGC	1 cut(s)	910
AspS9I	GGNCC	5 cut(s)	29, 101, 148, 536, 752
AsuC2I	CCSGG	1 cut(s)	679
AsuHPI	GGTGA	7 cut(s)	88, 307, 451, 569, 652, 667, 817
AsuNHI	GCTAGC	1 cut(s)	302
AvaI	CYCGRG	2 cut(s)	572, 690
AvrII	CCTAGG	1 cut(s)	937
BaeI	ACNNNNGTAYC	2 cut(s)	461, 494
BalI	TGGCCA	1 cut(s)	897
BanI	GGYRCC	1 cut(s)	320
BanII	GRGCYC	2 cut(s)	48, 876
Bbv12I	GWGCWC	2 cut(s)	48, 876
BbvI	GCAGC	1 cut(s)	600
BccI	CCATC	1 cut(s)	727
BceAI	ACGGC	1 cut(s)	262
BcnI	CCSGG	1 cut(s)	679
BcoDI	GTCTC	2 cut(s)	59, 438
BfaI	CTAG	2 cut(s)	303, 938
BglII	AGATCT	1 cut(s)	649
BisI	GCNGC	2 cut(s)	614, 631
BlnI	CCTAGG	1 cut(s)	937
BlsI	GCNGC	2 cut(s)	615, 632
Bme1390I	CCNGG	1 cut(s)	679
BmeT110I	CYCGRG	2 cut(s)	572, 690
BmgT120I	GGNCC	5 cut(s)	29, 101, 148, 536, 752
BmiI	GGNNCC	3 cut(s)	322, 538, 754
BmrFI	CCNGG	1 cut(s)	679
BmtI	GCTAGC	1 cut(s)	306
BpuEI	CTTGAG	1 cut(s)	194
BpuMI	CCSGG	1 cut(s)	679
BsaHI	GRCGYC	3 cut(s)	6, 476, 657
BsaJI	CCNNGG	2 cut(s)	689, 937
BsaWI	WCCGGW	3 cut(s)	259, 461, 662
BsaXI	ACNNNNNCTCC	2 cut(s)	104, 134
Bsc4I	CCNNNNNNNGG	2 cut(s)	266, 904
Bse118I	RCCGGY	3 cut(s)	98, 317, 472
Bse1I	ACTGG	3 cut(s)	186, 394, 775
BseAI	TCCGGA	1 cut(s)	259
BseDI	CCNNGG	2 cut(s)	689, 937
BseGI	GGATG	2 cut(s)	717, 846
BseLI	CCNNNNNNNGG	2 cut(s)	266, 904
BseMII	CTCAG	1 cut(s)	181
BseNI	ACTGG	3 cut(s)	186, 394, 775
BseX3I	CGGCCG	1 cut(s)	628
BseXI	GCAGC	1 cut(s)	600
BseYI	CCCAGC	1 cut(s)	422
Bsh1285I	CGRYCG	1 cut(s)	631
BshNI	GGYRCC	1 cut(s)	320
BsiEI	CGRYCG	1 cut(s)	631
BsiHKAI	GWGCWC	2 cut(s)	48, 876
BsiHKCI	CYCGRG	2 cut(s)	572, 690
BslFI	GGGAC	1 cut(s)	838
BslI	CCNNNNNNNGG	2 cut(s)	266, 904
BsmAI	GTCTC	2 cut(s)	59, 438
BsmFI	GGGAC	1 cut(s)	838
BsoBI	CYCGRG	2 cut(s)	572, 690
Bsp1286I	GDGCHC	2 cut(s)	48, 876
Bsp13I	TCCGGA	1 cut(s)	259
Bsp1407I	TGTACA	1 cut(s)	516
Bsp143I	GATC	5 cut(s)	269, 357, 439, 649, 795
BspACI	CCGC	3 cut(s)	84, 249, 631
BspCNI	CTCAG	1 cut(s)	180
BspEI	TCCGGA	1 cut(s)	259
BspLI	GGNNCC	3 cut(s)	322, 538, 754
BspOI	GCTAGC	1 cut(s)	306
BspPI	GGATC	2 cut(s)	277, 447
BspT107I	GGYRCC	1 cut(s)	320
BsrFI	RCCGGY	3 cut(s)	98, 317, 472
BsrGI	TGTACA	1 cut(s)	516
BsrI	ACTGG	3 cut(s)	186, 394, 775
BssAI	RCCGGY	3 cut(s)	98, 317, 472
BssECI	CCNNGG	2 cut(s)	689, 937
BssMI	GATC	5 cut(s)	269, 357, 439, 649, 795
BssNI	GRCGYC	3 cut(s)	6, 476, 657
BssT1I	CCWWGG	1 cut(s)	937
Bst6I	CTCTTC	1 cut(s)	759
BstACI	GRCGYC	3 cut(s)	6, 476, 657
BstAUI	TGTACA	1 cut(s)	516
BstC8I	GCNNGC	2 cut(s)	304, 922
BstDEI	CTNAG	2 cut(s)	167, 338
BstF5I	GGATG	2 cut(s)	717, 846
BstHHI	GCGC	1 cut(s)	910
BstKTI	GATC	5 cut(s)	272, 360, 442, 652, 798
BstMAI	GTCTC	2 cut(s)	59, 438
BstMBI	GATC	5 cut(s)	269, 357, 439, 649, 795
BstMCI	CGRYCG	1 cut(s)	631
BstSCI	CCNGG	1 cut(s)	677
BstV1I	GCAGC	1 cut(s)	600
BstX2I	RGATCY	2 cut(s)	439, 649
BstXI	CCANNNNNNTGG	1 cut(s)	389
BstYI	RGATCY	2 cut(s)	439, 649
BstZI	CGGCCG	1 cut(s)	628
BtsCI	GGATG	2 cut(s)	717, 846
BtsI	GCAGTG	1 cut(s)	640
BtsIMutI	CAGTG	4 cut(s)	175, 387, 640, 782
Cac8I	GCNNGC	2 cut(s)	304, 922
CfoI	GCGC	1 cut(s)	910
Cfr10I	RCCGGY	3 cut(s)	98, 317, 472
Cfr13I	GGNCC	5 cut(s)	29, 101, 148, 536, 752
CseI	GACGC	3 cut(s)	14, 465, 730
Csp6I	GTAC	2 cut(s)	220, 517
CviAII	CATG	2 cut(s)	298, 430
CviQI	GTAC	2 cut(s)	220, 517
DdeI	CTNAG	2 cut(s)	167, 338
DpnI	GATC	5 cut(s)	271, 359, 441, 651, 797
DpnII	GATC	5 cut(s)	269, 357, 439, 649, 795
EaeI	YGGCCR	3 cut(s)	183, 628, 895
EagI	CGGCCG	1 cut(s)	628
Eam1104I	CTCTTC	1 cut(s)	759
EarI	CTCTTC	1 cut(s)	759
EciI	GGCGGA	1 cut(s)	264
Ecl136II	GAGCTC	2 cut(s)	46, 874
EclXI	CGGCCG	1 cut(s)	628
Eco130I	CCWWGG	1 cut(s)	937
Eco24I	GRGCYC	2 cut(s)	48, 876
Eco52I	CGGCCG	1 cut(s)	628
Eco53kI	GAGCTC	2 cut(s)	46, 874
Eco57I	CTGAAG	3 cut(s)	512, 566, 783
Eco88I	CYCGRG	2 cut(s)	572, 690
EcoICRI	GAGCTC	2 cut(s)	46, 874
EcoRI	GAATTC	1 cut(s)	252
EcoT14I	CCWWGG	1 cut(s)	937
EcoT38I	GRGCYC	2 cut(s)	48, 876
ErhI	CCWWGG	1 cut(s)	937
FaeI	CATG	2 cut(s)	301, 433
FaiI	YATR	7 cut(s)	12, 299, 332, 398, 431, 449, 534
FaqI	GGGAC	1 cut(s)	838
FatI	CATG	2 cut(s)	297, 429
FauI	CCCGC	1 cut(s)	77
Fnu4HI	GCNGC	2 cut(s)	614, 631
FokI	GGATG	2 cut(s)	724, 853
FriOI	GRGCYC	2 cut(s)	48, 876
Fsp4HI	GCNGC	2 cut(s)	614, 631
FspBI	CTAG	2 cut(s)	303, 938
GlaI	GCGC	1 cut(s)	909
GluI	GCNGC	2 cut(s)	614, 631
GsaI	CCCAGC	1 cut(s)	426
HgaI	GACGC	3 cut(s)	14, 465, 730
HhaI	GCGC	1 cut(s)	910
Hin1I	GRCGYC	3 cut(s)	6, 476, 657
Hin1II	CATG	2 cut(s)	301, 433
Hin6I	GCGC	1 cut(s)	908
HinP1I	GCGC	1 cut(s)	908
HinfI	GANTC	9 cut(s)	106, 127, 159, 205, 289, 622, 685, 933, 952
HphI	GGTGA	7 cut(s)	88, 307, 451, 569, 652, 667, 817
Hpy166II	GTNNAC	1 cut(s)	851
Hpy188I	TCNGA	5 cut(s)	124, 132, 487, 800, 932
Hpy188III	TCNNGA	9 cut(s)	110, 260, 293, 437, 572, 653, 692, 761, 793
Hpy8I	GTNNAC	1 cut(s)	851
Hpy99I	CGWCG	6 cut(s)	8, 44, 227, 248, 481, 659
HpyCH4IV	ACGT	3 cut(s)	196, 222, 657
HpyCH4V	TGCA	2 cut(s)	702, 780
HpyF3I	CTNAG	2 cut(s)	167, 338
HpySE526I	ACGT	3 cut(s)	196, 222, 657
Hsp92I	GRCGYC	3 cut(s)	6, 476, 657
Hsp92II	CATG	2 cut(s)	301, 433
HspAI	GCGC	1 cut(s)	908
Kpn2I	TCCGGA	1 cut(s)	259
Kzo9I	GATC	5 cut(s)	269, 357, 439, 649, 795
Lsp1109I	GCAGC	1 cut(s)	600
MaeI	CTAG	2 cut(s)	303, 938
MaeII	ACGT	3 cut(s)	196, 222, 657
MaeIII	GTNAC	4 cut(s)	192, 282, 557, 658
MalI	GATC	5 cut(s)	271, 359, 441, 651, 797
MboI	GATC	5 cut(s)	269, 357, 439, 649, 795
MboII	GAAGA	6 cut(s)	65, 214, 362, 505, 776, 820
MflI	RGATCY	2 cut(s)	439, 649
MhlI	GDGCHC	2 cut(s)	48, 876
MlsI	TGGCCA	1 cut(s)	897
MluCI	AATT	7 cut(s)	115, 252, 343, 375, 548, 883, 957
MluNI	TGGCCA	1 cut(s)	897
Mox20I	TGGCCA	1 cut(s)	897
MroI	TCCGGA	1 cut(s)	259
MroXI	GAANNNNTTC	1 cut(s)	92
MscI	TGGCCA	1 cut(s)	897
MseI	TTAA	2 cut(s)	378, 645
Msp20I	TGGCCA	1 cut(s)	897
MspR9I	CCNGG	1 cut(s)	679
NciI	CCSGG	1 cut(s)	679
NdeII	GATC	5 cut(s)	269, 357, 439, 649, 795
NheI	GCTAGC	1 cut(s)	302
NlaIII	CATG	2 cut(s)	301, 433
NlaIV	GGNNCC	3 cut(s)	322, 538, 754
NmeAIII	GCCGAG	1 cut(s)	606
NmuCI	GTSAC	3 cut(s)	192, 557, 658
PaeR7I	CTCGAG	1 cut(s)	572
PcsI	WCGNNNNNNNCGW	1 cut(s)	278
PdmI	GAANNNNTTC	1 cut(s)	92
PfeI	GAWTC	9 cut(s)	106, 127, 159, 205, 289, 622, 685, 933, 952
PkrI	GCNGC	2 cut(s)	615, 632
Psp124BI	GAGCTC	2 cut(s)	48, 876
PspFI	CCCAGC	1 cut(s)	422
PspN4I	GGNNCC	3 cut(s)	322, 538, 754
PspPI	GGNCC	5 cut(s)	29, 101, 148, 536, 752
PsuI	RGATCY	2 cut(s)	439, 649
RsaI	GTAC	2 cut(s)	221, 518
RsaNI	GTAC	2 cut(s)	220, 517
SacI	GAGCTC	2 cut(s)	48, 876
SaqAI	TTAA	2 cut(s)	378, 645
SatI	GCNGC	2 cut(s)	614, 631
Sau3AI	GATC	5 cut(s)	269, 357, 439, 649, 795
Sau96I	GGNCC	5 cut(s)	29, 101, 148, 536, 752
ScrFI	CCNGG	1 cut(s)	679
SduI	GDGCHC	2 cut(s)	48, 876
Sfr274I	CTCGAG	1 cut(s)	572
SlaI	CTCGAG	1 cut(s)	572
SmlI	CTYRAG	2 cut(s)	209, 572
SmoI	CTYRAG	2 cut(s)	209, 572
Sse9I	AATT	7 cut(s)	115, 252, 343, 375, 548, 883, 957
SsiI	CCGC	3 cut(s)	84, 249, 631
SspMI	CTAG	2 cut(s)	303, 938
SstI	GAGCTC	2 cut(s)	48, 876
StyD4I	CCNGG	1 cut(s)	677
StyI	CCWWGG	1 cut(s)	937
TaiI	ACGT	3 cut(s)	199, 225, 660
TaqI	TCGA	4 cut(s)	3, 42, 573, 654
TasI	AATT	7 cut(s)	115, 252, 343, 375, 548, 883, 957
TatI	WGTACW	1 cut(s)	516
TauI	GCSGC	1 cut(s)	633
TfiI	GAWTC	9 cut(s)	106, 127, 159, 205, 289, 622, 685, 933, 952
Tru1I	TTAA	2 cut(s)	378, 645
Tru9I	TTAA	2 cut(s)	378, 645
TscAI	CASTG	4 cut(s)	175, 394, 640, 782
TseFI	GTSAC	3 cut(s)	192, 557, 658
TseI	GCWGC	1 cut(s)	613
Tsp45I	GTSAC	3 cut(s)	192, 557, 658
TspDTI	ATGAA	2 cut(s)	65, 385
TspGWI	ACGGA	2 cut(s)	171, 301
TspRI	CASTG	4 cut(s)	175, 394, 640, 782
XapI	RAATTY	3 cut(s)	252, 548, 957
XhoI	CTCGAG	1 cut(s)	572
XmaJI	CCTAGG	1 cut(s)	937
XmnI	GAANNNNTTC	1 cut(s)	92
XspI	CTAG	2 cut(s)	303, 938
ZraI	GACGTC	1 cut(s)	658

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.