Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8337453.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 734

Gene Structure 734 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8337453.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

gcgtctcagtttctccggatcatcaccttctacgccactcagcttcctggtccaaactatcattgccgcgagggctcagaacttgccaggctgccccctccaaagagtgcacttgcagtgctcttaatcaactttccccgaggtgttatgtatggctgcggtgatttgattttttcatcacacatgattttcactttagtatttgtgcgcacatttcagaaatatggaaccaggaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0006629 GO:0006643 GO:0006665 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0030148 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045140 GO:0046467 GO:0071704 GO:0098791 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 ko04071 map00600 map01100 map04071

Pfam Domains

Protein Families

PAP2_C

Protein Analysis

79

Amino Acids

8.98

Weight (kDa)

10.03

Isoelectric Point (pI)

44.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	209
AccII	CGCG	1 cut(s)	69
AccIII	TCCGGA	1 cut(s)	15
AciI	CCGC	2 cut(s)	67, 159
AclWI	GGATC	1 cut(s)	26
AjnI	CCWGG	3 cut(s)	46, 86, 230
AluBI	AGCT	1 cut(s)	43
AluI	AGCT	1 cut(s)	43
Alw21I	GWGCWC	2 cut(s)	112, 123
Alw26I	GTCTC	1 cut(s)	9
Alw44I	GTGCAC	1 cut(s)	108
AlwI	GGATC	1 cut(s)	26
Ama87I	CYCGRG	1 cut(s)	138
Aor13HI	TCCGGA	1 cut(s)	15
ApaLI	GTGCAC	1 cut(s)	108
ApeKI	GCWGC	2 cut(s)	91, 156
AspLEI	GCGC	1 cut(s)	210
AspS9I	GGNCC	1 cut(s)	50
AsuHPI	GGTGA	2 cut(s)	16, 173
AvaI	CYCGRG	1 cut(s)	138
AvaII	GGWCC	1 cut(s)	50
BaeGI	GKGCMC	1 cut(s)	112
BanII	GRGCYC	1 cut(s)	77
Bbv12I	GWGCWC	2 cut(s)	112, 123
BbvI	GCAGC	2 cut(s)	78, 143
BciT130I	CCWGG	3 cut(s)	48, 88, 232
BcoDI	GTCTC	1 cut(s)	9
BglI	GCCNNNNNGGC	1 cut(s)	72
BisI	GCNGC	3 cut(s)	67, 92, 157
BlsI	GCNGC	3 cut(s)	68, 93, 158
Bme1390I	CCNGG	3 cut(s)	48, 88, 232
Bme18I	GGWCC	1 cut(s)	50
BmeT110I	CYCGRG	1 cut(s)	138
BmgT120I	GGNCC	1 cut(s)	50
BmiI	GGNNCC	1 cut(s)	229
BmrFI	CCNGG	3 cut(s)	48, 88, 232
BsaJI	CCNNGG	1 cut(s)	139
BsaWI	WCCGGW	1 cut(s)	15
Bse3DI	GCAATG	1 cut(s)	61
BseAI	TCCGGA	1 cut(s)	15
BseBI	CCWGG	3 cut(s)	48, 88, 232
BseDI	CCNNGG	1 cut(s)	139
BseMI	GCAATG	1 cut(s)	61
BseMII	CTCAG	3 cut(s)	20, 53, 90
BseSI	GKGCMC	1 cut(s)	112
BseXI	GCAGC	2 cut(s)	78, 143
Bsh1236I	CGCG	1 cut(s)	69
BsiHKAI	GWGCWC	2 cut(s)	112, 123
BsiHKCI	CYCGRG	1 cut(s)	138
BsiSI	CCGG	1 cut(s)	16
BsmAI	GTCTC	1 cut(s)	9
BsmBI	CGTCTC	1 cut(s)	9
BsoBI	CYCGRG	1 cut(s)	138
Bsp1286I	GDGCHC	3 cut(s)	77, 112, 123
Bsp13I	TCCGGA	1 cut(s)	15
Bsp143I	GATC	1 cut(s)	18
BspACI	CCGC	2 cut(s)	67, 159
BspCNI	CTCAG	3 cut(s)	19, 52, 89
BspEI	TCCGGA	1 cut(s)	15
BspFNI	CGCG	1 cut(s)	69
BspLI	GGNNCC	1 cut(s)	229
BspPI	GGATC	1 cut(s)	26
BsrDI	GCAATG	1 cut(s)	61
BssECI	CCNNGG	1 cut(s)	139
BssMI	GATC	1 cut(s)	18
Bst2UI	CCWGG	3 cut(s)	48, 88, 232
BstDEI	CTNAG	3 cut(s)	6, 39, 76
BstFNI	CGCG	1 cut(s)	69
BstHHI	GCGC	1 cut(s)	210
BstKTI	GATC	1 cut(s)	21
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	1 cut(s)	18
BstMWI	GCNNNNNNNGC	1 cut(s)	72
BstNI	CCWGG	3 cut(s)	48, 88, 232
BstSCI	CCNGG	3 cut(s)	46, 86, 230
BstSLI	GKGCMC	1 cut(s)	112
BstUI	CGCG	1 cut(s)	69
BstV1I	GCAGC	2 cut(s)	78, 143
BtsI	GCAGTG	1 cut(s)	123
BtsIMutI	CAGTG	1 cut(s)	123
CfoI	GCGC	1 cut(s)	210
Cfr13I	GGNCC	1 cut(s)	50
CviAII	CATG	1 cut(s)	184
CviJI	RGCY	4 cut(s)	43, 75, 91, 156
CviKI_1	RGCY	4 cut(s)	43, 75, 91, 156
DdeI	CTNAG	3 cut(s)	6, 39, 76
DpnI	GATC	1 cut(s)	20
DpnII	GATC	1 cut(s)	18
Eco24I	GRGCYC	1 cut(s)	77
Eco47I	GGWCC	1 cut(s)	50
Eco88I	CYCGRG	1 cut(s)	138
EcoRII	CCWGG	3 cut(s)	46, 86, 230
EcoT38I	GRGCYC	1 cut(s)	77
Esp3I	CGTCTC	1 cut(s)	9
FaeI	CATG	1 cut(s)	187
FaiI	YATR	4 cut(s)	149, 153, 185, 225
FatI	CATG	1 cut(s)	183
Fnu4HI	GCNGC	3 cut(s)	67, 92, 157
FriOI	GRGCYC	1 cut(s)	77
Fsp4HI	GCNGC	3 cut(s)	67, 92, 157
FspAI	RTGCGCAY	1 cut(s)	209
FspI	TGCGCA	1 cut(s)	209
GlaI	GCGC	1 cut(s)	209
GluI	GCNGC	3 cut(s)	67, 92, 157
HapII	CCGG	1 cut(s)	16
HhaI	GCGC	1 cut(s)	210
Hin1II	CATG	1 cut(s)	187
Hin6I	GCGC	1 cut(s)	208
HinP1I	GCGC	1 cut(s)	208
HpaII	CCGG	1 cut(s)	16
HphI	GGTGA	2 cut(s)	16, 173
Hpy166II	GTNNAC	1 cut(s)	110
Hpy188I	TCNGA	2 cut(s)	79, 219
Hpy188III	TCNNGA	1 cut(s)	16
Hpy8I	GTNNAC	1 cut(s)	110
HpyAV	CCTTC	1 cut(s)	37
HpyCH4V	TGCA	2 cut(s)	110, 116
HpyF10VI	GCNNNNNNNGC	1 cut(s)	72
HpyF3I	CTNAG	3 cut(s)	6, 39, 76
Hsp92II	CATG	1 cut(s)	187
HspAI	GCGC	1 cut(s)	208
Kpn2I	TCCGGA	1 cut(s)	15
Kzo9I	GATC	1 cut(s)	18
LpnPI	CCDG	6 cut(s)	29, 33, 60, 73, 100, 217
Lsp1109I	GCAGC	2 cut(s)	78, 143
MalI	GATC	1 cut(s)	20
MboI	GATC	1 cut(s)	18
MhlI	GDGCHC	3 cut(s)	77, 112, 123
MnlI	CCTC	4 cut(s)	64, 108, 134, 228
MroI	TCCGGA	1 cut(s)	15
MseI	TTAA	1 cut(s)	125
MspI	CCGG	1 cut(s)	16
MspR9I	CCNGG	3 cut(s)	48, 88, 232
MvaI	CCWGG	3 cut(s)	48, 88, 232
MvnI	CGCG	1 cut(s)	69
MwoI	GCNNNNNNNGC	1 cut(s)	72
NdeII	GATC	1 cut(s)	18
NlaIII	CATG	1 cut(s)	187
NlaIV	GGNNCC	1 cut(s)	229
NsbI	TGCGCA	1 cut(s)	209
PkrI	GCNGC	3 cut(s)	68, 93, 158
Psp6I	CCWGG	3 cut(s)	46, 86, 230
PspGI	CCWGG	3 cut(s)	46, 86, 230
PspN4I	GGNNCC	1 cut(s)	229
PspPI	GGNCC	1 cut(s)	50
SaqAI	TTAA	1 cut(s)	125
SatI	GCNGC	3 cut(s)	67, 92, 157
Sau3AI	GATC	1 cut(s)	18
Sau96I	GGNCC	1 cut(s)	50
ScrFI	CCNGG	3 cut(s)	48, 88, 232
SduI	GDGCHC	3 cut(s)	77, 112, 123
SetI	ASST	4 cut(s)	29, 45, 145, 239
SinI	GGWCC	1 cut(s)	50
SsiI	CCGC	2 cut(s)	67, 159
StyD4I	CCNGG	3 cut(s)	46, 86, 230
TauI	GCSGC	1 cut(s)	69
Tru1I	TTAA	1 cut(s)	125
Tru9I	TTAA	1 cut(s)	125
TscAI	CASTG	1 cut(s)	123
TseI	GCWGC	2 cut(s)	91, 156
TspDTI	ATGAA	1 cut(s)	165
TspRI	CASTG	1 cut(s)	123
VneI	GTGCAC	1 cut(s)	108
VpaK11BI	GGWCC	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.