Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8346671.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 817

Gene Structure 816 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8346671.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

atggagaggggtccagagtcaaaggcgtttcctgtgaaatttcccatggtaggtgagatctcattcagtcgtacaacttcaacaagagcaggaggtcacttgtcaaatttgcgcactggtttgggaagagaagacgttgcaccgataagagaaaggggtcagttacccaatgggcgcttggctttcgtgagagaagaaattgcgtcaaacttgcagtctattttgttaaaagatggaagatctgattcacgagaatctcaagattcagactcacctatacctttaagaatacgaaatggaaaggcctcttttccagaagaggaagtatttatgtctgaggctgttacattcaagggacatggagaattattcgatgaagggggtcctagttctttctctggggttagtcaccctccagaacctgttgatacagatttaatcaaaacagtttatgttccggttagtcagaatcagactgaacgtgggtgcttgatgaagagcttatccataaaaggccctttcctcgaagatctttcactccatgttcctgcaaagaaaccaatcccaactgctctttccccttcagaaagcttggttgaagaacccaacgacgtagatgcattgtctccaccatttgcggttcatcgtgcatcacaaaatacagataattcactccttcctccagattctgaggagaaggagtgtgtttgggatgcttctttgcctcctagtggcaatgtaagtccgctaagtagtattgacagtactggtgttgtcactgctatgagcattgtcaatagccgtgccagtacttac

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

272

Amino Acids

29.34

Weight (kDa)

5.01

Isoelectric Point (pI)

61.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	113
AciI	CCGC	2 cut(s)	638, 746
AcsI	RAATTY	2 cut(s)	38, 106
AcuI	CTGAAG	1 cut(s)	567
AfaI	GTAC	3 cut(s)	73, 766, 811
AfiI	CCNNNNNNNGG	2 cut(s)	50, 731
AgsI	TTSAA	3 cut(s)	81, 352, 599
AjuI	GAANNNNNNNTTGG	2 cut(s)	559, 591
AluBI	AGCT	2 cut(s)	501, 591
AluI	AGCT	2 cut(s)	501, 591
Alw26I	GTCTC	1 cut(s)	630
AlwNI	CAGNNNCTG	2 cut(s)	422, 689
AoxI	GGCC	2 cut(s)	303, 514
ApoI	RAATTY	2 cut(s)	38, 106
ArsI	GACNNNNNNTTYG	2 cut(s)	200, 232
AspLEI	GCGC	2 cut(s)	114, 177
AspS9I	GGNCC	3 cut(s)	11, 383, 515
AsuHPI	GGTGA	3 cut(s)	65, 264, 401
AvaII	GGWCC	2 cut(s)	11, 383
BauI	CACGAG	1 cut(s)	249
BbsI	GAAGAC	1 cut(s)	138
BccI	CCATC	1 cut(s)	227
BceAI	ACGGC	1 cut(s)	786
BcgI	CGANNNNNNTGC	2 cut(s)	599, 633
BcoDI	GTCTC	1 cut(s)	630
BfaI	CTAG	2 cut(s)	387, 729
BfoI	RGCGCY	1 cut(s)	178
BglII	AGATCT	3 cut(s)	57, 239, 529
BmcAI	AGTACT	2 cut(s)	766, 811
Bme18I	GGWCC	2 cut(s)	11, 383
BmgT120I	GGNCC	3 cut(s)	11, 383, 515
BmiI	GGNNCC	2 cut(s)	12, 384
BmsI	GCATC	3 cut(s)	607, 659, 703
BpiI	GAAGAC	1 cut(s)	138
BpmI	CTGGAG	2 cut(s)	399, 666
BpuEI	CTTGAG	1 cut(s)	243
BsaJI	CCNNGG	1 cut(s)	45
BsaWI	WCCGGW	1 cut(s)	457
BsaXI	ACNNNNNCTCC	2 cut(s)	686, 716
Bsc4I	CCNNNNNNNGG	2 cut(s)	50, 731
Bse1I	ACTGG	3 cut(s)	121, 772, 807
Bse3DI	GCAATG	1 cut(s)	742
BseDI	CCNNGG	1 cut(s)	45
BseGI	GGATG	1 cut(s)	718
BseLI	CCNNNNNNNGG	2 cut(s)	50, 731
BseMI	GCAATG	1 cut(s)	742
BseMII	CTCAG	2 cut(s)	327, 681
BseNI	ACTGG	3 cut(s)	121, 772, 807
BseRI	GAGGAG	1 cut(s)	707
BshFI	GGCC	2 cut(s)	305, 516
BsiSI	CCGG	1 cut(s)	458
BslFI	GGGAC	1 cut(s)	369
BslI	CCNNNNNNNGG	2 cut(s)	50, 731
BsmAI	GTCTC	1 cut(s)	630
BsmFI	GGGAC	1 cut(s)	369
BsnI	GGCC	2 cut(s)	305, 516
Bsp143I	GATC	3 cut(s)	57, 239, 529
Bsp19I	CCATGG	1 cut(s)	45
BspACI	CCGC	2 cut(s)	638, 746
BspANI	GGCC	2 cut(s)	305, 516
BspCNI	CTCAG	2 cut(s)	328, 682
BspLI	GGNNCC	2 cut(s)	12, 384
BspQI	GCTCTTC	1 cut(s)	491
BsrDI	GCAATG	1 cut(s)	742
BsrI	ACTGG	3 cut(s)	121, 772, 807
BssECI	CCNNGG	1 cut(s)	45
BssMI	GATC	3 cut(s)	57, 239, 529
BssSI	CACGAG	1 cut(s)	249
BssT1I	CCWWGG	1 cut(s)	45
Bst2BI	CACGAG	1 cut(s)	249
Bst4CI	ACNGT	2 cut(s)	448, 764
Bst6I	CTCTTC	3 cut(s)	121, 312, 491
BstDEI	CTNAG	3 cut(s)	336, 690, 749
BstDSI	CCRYGG	1 cut(s)	45
BstF5I	GGATG	1 cut(s)	718
BstH2I	RGCGCY	1 cut(s)	178
BstHHI	GCGC	2 cut(s)	114, 177
BstKTI	GATC	3 cut(s)	60, 242, 532
BstMAI	GTCTC	1 cut(s)	630
BstMBI	GATC	3 cut(s)	57, 239, 529
BstV2I	GAAGAC	1 cut(s)	138
BstX2I	RGATCY	3 cut(s)	57, 239, 529
BstYI	RGATCY	3 cut(s)	57, 239, 529
BsuRI	GGCC	2 cut(s)	305, 516
BtgI	CCRYGG	1 cut(s)	45
BtsCI	GGATG	1 cut(s)	718
BtsI	GCAGTG	1 cut(s)	777
BtsIMutI	CAGTG	2 cut(s)	114, 777
CaiI	CAGNNNCTG	2 cut(s)	422, 689
CfoI	GCGC	2 cut(s)	114, 177
Cfr13I	GGNCC	3 cut(s)	11, 383, 515
CseI	GACGC	1 cut(s)	192
Csp6I	GTAC	3 cut(s)	72, 765, 810
CviAII	CATG	3 cut(s)	46, 359, 542
CviJI	RGCY	7 cut(s)	182, 305, 341, 501, 516, 591, 801
CviKI_1	RGCY	7 cut(s)	182, 305, 341, 501, 516, 591, 801
CviQI	GTAC	3 cut(s)	72, 765, 810
DdeI	CTNAG	3 cut(s)	336, 690, 749
DpnI	GATC	3 cut(s)	59, 241, 531
DpnII	GATC	3 cut(s)	57, 239, 529
Eam1104I	CTCTTC	3 cut(s)	121, 312, 491
EarI	CTCTTC	3 cut(s)	121, 312, 491
Eco130I	CCWWGG	1 cut(s)	45
Eco147I	AGGCCT	1 cut(s)	305
Eco47I	GGWCC	2 cut(s)	11, 383
Eco57I	CTGAAG	1 cut(s)	567
EcoO109I	RGGNCCY	2 cut(s)	383, 515
EcoT14I	CCWWGG	1 cut(s)	45
EcoT22I	ATGCAT	1 cut(s)	622
ErhI	CCWWGG	1 cut(s)	45
FaeI	CATG	3 cut(s)	49, 362, 545
FaiI	YATR	8 cut(s)	47, 278, 332, 360, 453, 509, 543, 785
FaqI	GGGAC	1 cut(s)	369
FatI	CATG	3 cut(s)	45, 358, 541
FokI	GGATG	1 cut(s)	725
FspBI	CTAG	2 cut(s)	387, 729
FspI	TGCGCA	1 cut(s)	113
GlaI	GCGC	2 cut(s)	113, 176
GsuI	CTGGAG	2 cut(s)	399, 666
HaeII	RGCGCY	1 cut(s)	178
HaeIII	GGCC	2 cut(s)	305, 516
HapII	CCGG	1 cut(s)	458
HgaI	GACGC	1 cut(s)	192
HhaI	GCGC	2 cut(s)	114, 177
Hin1II	CATG	3 cut(s)	49, 362, 545
Hin6I	GCGC	2 cut(s)	112, 175
HinP1I	GCGC	2 cut(s)	112, 175
HindIII	AAGCTT	1 cut(s)	589
HinfI	GANTC	7 cut(s)	17, 245, 254, 263, 269, 469, 686
HpaII	CCGG	1 cut(s)	458
HphI	GGTGA	3 cut(s)	65, 264, 401
Hpy188I	TCNGA	7 cut(s)	244, 268, 337, 468, 474, 586, 691
Hpy188III	TCNNGA	7 cut(s)	14, 187, 249, 260, 314, 416, 683
Hpy99I	CGWCG	1 cut(s)	614
HpyAV	CCTTC	4 cut(s)	371, 591, 686, 691
HpyCH4III	ACNGT	2 cut(s)	448, 764
HpyCH4IV	ACGT	3 cut(s)	135, 481, 612
HpyCH4V	TGCA	5 cut(s)	140, 214, 551, 620, 650
HpyF3I	CTNAG	3 cut(s)	336, 690, 749
HpySE526I	ACGT	3 cut(s)	135, 481, 612
Hsp92II	CATG	3 cut(s)	49, 362, 545
HspAI	GCGC	2 cut(s)	112, 175
Kzo9I	GATC	3 cut(s)	57, 239, 529
LguI	GCTCTTC	1 cut(s)	491
LweI	GCATC	3 cut(s)	607, 659, 703
MaeI	CTAG	2 cut(s)	387, 729
MaeII	ACGT	3 cut(s)	135, 481, 612
MaeIII	GTNAC	5 cut(s)	95, 162, 343, 407, 775
MalI	GATC	3 cut(s)	59, 241, 531
MboI	GATC	3 cut(s)	57, 239, 529
MboII	GAAGA	8 cut(s)	138, 143, 206, 249, 329, 508, 539, 611
MflI	RGATCY	3 cut(s)	57, 239, 529
MluCI	AATT	5 cut(s)	38, 106, 198, 365, 667
MlyI	GAGTC	2 cut(s)	26, 263
MnlI	CCTC	9 cut(s)	86, 313, 316, 331, 423, 533, 685, 690, 735
Mph1103I	ATGCAT	1 cut(s)	622
MseI	TTAA	3 cut(s)	227, 284, 437
MslI	CAYNNNNRTG	1 cut(s)	782
MspI	CCGG	1 cut(s)	458
NcoI	CCATGG	1 cut(s)	45
NdeII	GATC	3 cut(s)	57, 239, 529
NlaIII	CATG	3 cut(s)	49, 362, 545
NlaIV	GGNNCC	2 cut(s)	12, 384
NmuCI	GTSAC	3 cut(s)	95, 407, 775
NsbI	TGCGCA	1 cut(s)	113
NsiI	ATGCAT	1 cut(s)	622
PceI	AGGCCT	1 cut(s)	305
PciSI	GCTCTTC	1 cut(s)	491
PfeI	GAWTC	5 cut(s)	245, 254, 263, 469, 686
PleI	GAGTC	2 cut(s)	25, 263
PpsI	GAGTC	2 cut(s)	25, 263
PpuMI	RGGWCCY	1 cut(s)	383
Psp5II	RGGWCCY	1 cut(s)	383
PspN4I	GGNNCC	2 cut(s)	12, 384
PspPI	GGNCC	3 cut(s)	11, 383, 515
PspPPI	RGGWCCY	1 cut(s)	383
PstNI	CAGNNNCTG	2 cut(s)	422, 689
PsuI	RGATCY	3 cut(s)	57, 239, 529
RsaI	GTAC	3 cut(s)	73, 766, 811
RsaNI	GTAC	3 cut(s)	72, 765, 810
RseI	CAYNNNNRTG	1 cut(s)	782
SapI	GCTCTTC	1 cut(s)	491
SaqAI	TTAA	3 cut(s)	227, 284, 437
Sau3AI	GATC	3 cut(s)	57, 239, 529
Sau96I	GGNCC	3 cut(s)	11, 383, 515
ScaI	AGTACT	2 cut(s)	766, 811
SchI	GAGTC	2 cut(s)	26, 263
SfaNI	GCATC	3 cut(s)	607, 659, 703
SinI	GGWCC	2 cut(s)	11, 383
SmiMI	CAYNNNNRTG	1 cut(s)	782
SmlI	CTYRAG	1 cut(s)	258
SmoI	CTYRAG	1 cut(s)	258
Sse9I	AATT	5 cut(s)	38, 106, 198, 365, 667
SseBI	AGGCCT	1 cut(s)	305
SsiI	CCGC	2 cut(s)	638, 746
SspMI	CTAG	2 cut(s)	387, 729
StuI	AGGCCT	1 cut(s)	305
StyI	CCWWGG	1 cut(s)	45
TaaI	ACNGT	2 cut(s)	448, 764
TaiI	ACGT	3 cut(s)	138, 484, 615
TaqI	TCGA	2 cut(s)	372, 525
TasI	AATT	5 cut(s)	38, 106, 198, 365, 667
TatI	WGTACW	2 cut(s)	764, 809
TfiI	GAWTC	5 cut(s)	245, 254, 263, 469, 686
Tru1I	TTAA	3 cut(s)	227, 284, 437
Tru9I	TTAA	3 cut(s)	227, 284, 437
TscAI	CASTG	2 cut(s)	121, 784
TseFI	GTSAC	3 cut(s)	95, 407, 775
Tsp45I	GTSAC	3 cut(s)	95, 407, 775
TspDTI	ATGAA	3 cut(s)	390, 509, 632
TspRI	CASTG	2 cut(s)	121, 784
VpaK11BI	GGWCC	2 cut(s)	11, 383
XapI	RAATTY	2 cut(s)	38, 106
XcmI	CCANNNNNNNNNTGG	1 cut(s)	175
XspI	CTAG	2 cut(s)	387, 729
ZrmI	AGTACT	2 cut(s)	766, 811
Zsp2I	ATGCAT	1 cut(s)	622

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.