Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8361445.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

27 .. 791

Gene Structure 765 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8361445.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

atgtaccgcacctgggatccaatcgacgagttctacttggatgatctaagtagaaatttgagcgctgcacgaagatataatactcctgtcaattttgcaagaatccctaactacactgctcccgaagaggtgtaccgaacaggccggacaatgggagggaccagtaccatcaacaagagctacaatctcacctggggattccctgtagatcccgacttttcttacctggtgaggctccatttctgtgagattgacccaaatatttccaaggcttggggtagagtgtttcagatattcatagccaatttaacagctgaaccgttcgcggacataatcagatggactacagaaaatggagaaggaaatgggattcccatctatagggactactttgtaccggtgccgatatttggaacccagaagaaaggttccgttaatctctttgttgcactacaagcatatcaagacgattattacactcaatataacgatgcgatcttgaatgggctggaaatcttcaaacttaatgacacagacggcaatctcggcggacccatccccgagctaccgaatatcccgccaaaggtgacgtcggaaagctctagaaactcgaagaagaagtcgactcctatgcttgctatcatcgccggtgtagtttcggccttacttgttctttccttcctcgggtttttagttttcaggcgtggacgaaaagtcaaggattccaaatccagccacaggatgacaacgtcaaccatgacttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009723 GO:0009725 GO:0009741 GO:0009787 GO:0009788 GO:0009791 GO:0009856 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010118 GO:0010483 GO:0010646 GO:0010648 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0030054 GO:0030308 GO:0030312 GO:0032501 GO:0032502 GO:0033993 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0043680 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044426 GO:0044462 GO:0044464 GO:0044703 GO:0044706 GO:0045926 GO:0046777 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051703 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like Pkinase_Tyr

Protein Analysis

254

Amino Acids

28.75

Weight (kDa)

8.84

Isoelectric Point (pI)

29.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	593
AccB1I	GGYRCC	1 cut(s)	400
AccB7I	CCANNNNNTGG	1 cut(s)	273
AccI	GTMKAC	1 cut(s)	623
AccII	CGCG	1 cut(s)	326
AciI	CCGC	4 cut(s)	7, 326, 549, 578
AclWI	GGATC	3 cut(s)	11, 24, 203
AcsI	RAATTY	1 cut(s)	55
AcyI	GRCGYC	1 cut(s)	590
AfaI	GTAC	4 cut(s)	5, 134, 166, 396
AfeI	AGCGCT	1 cut(s)	64
AfiI	CCNNNNNNNGG	8 cut(s)	13, 151, 273, 381, 410, 583, 684, 738
AgeI	ACCGGT	1 cut(s)	397
AgsI	TTSAA	2 cut(s)	502, 520
AhdI	GACNNNNNGTC	1 cut(s)	713
AjnI	CCWGG	3 cut(s)	11, 191, 225
AluBI	AGCT	4 cut(s)	180, 314, 565, 600
AluI	AGCT	4 cut(s)	180, 314, 565, 600
AlwI	GGATC	3 cut(s)	11, 24, 203
Ama87I	CYCGRG	2 cut(s)	560, 683
Aor51HI	AGCGCT	1 cut(s)	64
AoxI	GGCC	2 cut(s)	142, 660
ApeKI	GCWGC	1 cut(s)	65
ApoI	RAATTY	1 cut(s)	55
ArsI	GACNNNNNNTTYG	4 cut(s)	575, 605, 607, 637
AsiGI	ACCGGT	1 cut(s)	397
AspLEI	GCGC	1 cut(s)	65
AspS9I	GGNCC	2 cut(s)	159, 551
AsuHPI	GGTGA	3 cut(s)	181, 241, 598
AvaI	CYCGRG	2 cut(s)	560, 683
AvaII	GGWCC	2 cut(s)	159, 551
BamHI	GGATCC	1 cut(s)	16
BanI	GGYRCC	1 cut(s)	400
BarI	GAAGNNNNNNTAC	2 cut(s)	64, 96
BbvI	GCAGC	1 cut(s)	52
BccI	CCATC	4 cut(s)	176, 333, 383, 563
BceAI	ACGGC	1 cut(s)	553
BcgI	CGANNNNNNTGC	2 cut(s)	613, 647
BciT130I	CCWGG	3 cut(s)	13, 193, 227
BfaI	CTAG	1 cut(s)	603
BfmI	CTRYAG	3 cut(s)	204, 345, 379
BfoI	RGCGCY	1 cut(s)	66
BisI	GCNGC	1 cut(s)	66
BlsI	GCNGC	1 cut(s)	67
Bme1390I	CCNGG	3 cut(s)	13, 193, 227
Bme18I	GGWCC	2 cut(s)	159, 551
BmeRI	GACNNNNNGTC	1 cut(s)	713
BmeT110I	CYCGRG	2 cut(s)	560, 683
BmgT120I	GGNCC	2 cut(s)	159, 551
BmiI	GGNNCC	7 cut(s)	18, 160, 236, 402, 415, 430, 553
BmrFI	CCNGG	3 cut(s)	13, 193, 227
BmsI	GCATC	1 cut(s)	481
BsaBI	GATNNNNATC	1 cut(s)	374
BsaHI	GRCGYC	1 cut(s)	590
BsaJI	CCNNGG	4 cut(s)	12, 192, 267, 682
BsaWI	WCCGGW	1 cut(s)	397
Bsc4I	CCNNNNNNNGG	8 cut(s)	13, 151, 273, 381, 410, 583, 684, 738
Bse118I	RCCGGY	2 cut(s)	397, 647
Bse1I	ACTGG	1 cut(s)	162
Bse8I	GATNNNNATC	1 cut(s)	374
BseBI	CCWGG	3 cut(s)	13, 193, 227
BseDI	CCNNGG	4 cut(s)	12, 192, 267, 682
BseGI	GGATG	3 cut(s)	46, 555, 747
BseJI	GATNNNNATC	1 cut(s)	374
BseLI	CCNNNNNNNGG	8 cut(s)	13, 151, 273, 381, 410, 583, 684, 738
BseNI	ACTGG	1 cut(s)	162
BseXI	GCAGC	1 cut(s)	52
BsgI	GTGCAG	1 cut(s)	51
Bsh1236I	CGCG	1 cut(s)	326
BshFI	GGCC	2 cut(s)	144, 662
BshNI	GGYRCC	1 cut(s)	400
BshTI	ACCGGT	1 cut(s)	397
BsiHKCI	CYCGRG	2 cut(s)	560, 683
BsiSI	CCGG	3 cut(s)	145, 398, 648
BslFI	GGGAC	2 cut(s)	172, 398
BslI	CCNNNNNNNGG	8 cut(s)	13, 151, 273, 381, 410, 583, 684, 738
BsmFI	GGGAC	2 cut(s)	172, 398
BsnI	GGCC	2 cut(s)	144, 662
BsoBI	CYCGRG	2 cut(s)	560, 683
Bsp143I	GATC	4 cut(s)	16, 43, 208, 495
BspACI	CCGC	4 cut(s)	7, 326, 549, 578
BspANI	GGCC	2 cut(s)	144, 662
BspFNI	CGCG	1 cut(s)	326
BspLI	GGNNCC	7 cut(s)	18, 160, 236, 402, 415, 430, 553
BspPI	GGATC	3 cut(s)	11, 24, 203
BspT107I	GGYRCC	1 cut(s)	400
BsrFI	RCCGGY	2 cut(s)	397, 647
BsrI	ACTGG	1 cut(s)	162
BssAI	RCCGGY	2 cut(s)	397, 647
BssECI	CCNNGG	4 cut(s)	12, 192, 267, 682
BssMI	GATC	4 cut(s)	16, 43, 208, 495
BssNI	GRCGYC	1 cut(s)	590
BssT1I	CCWWGG	1 cut(s)	267
Bst2UI	CCWGG	3 cut(s)	13, 193, 227
Bst4CI	ACNGT	1 cut(s)	321
Bst6I	CTCTTC	1 cut(s)	120
BstACI	GRCGYC	1 cut(s)	590
BstC8I	GCNNGC	1 cut(s)	636
BstDEI	CTNAG	2 cut(s)	47, 762
BstF5I	GGATG	3 cut(s)	46, 555, 747
BstFNI	CGCG	1 cut(s)	326
BstH2I	RGCGCY	1 cut(s)	66
BstHHI	GCGC	1 cut(s)	65
BstKTI	GATC	4 cut(s)	19, 46, 211, 498
BstMBI	GATC	4 cut(s)	16, 43, 208, 495
BstMWI	GCNNNNNNNGC	3 cut(s)	455, 546, 644
BstNI	CCWGG	3 cut(s)	13, 193, 227
BstSCI	CCNGG	3 cut(s)	11, 191, 225
BstSFI	CTRYAG	3 cut(s)	204, 345, 379
BstUI	CGCG	1 cut(s)	326
BstV1I	GCAGC	1 cut(s)	52
BstX2I	RGATCY	2 cut(s)	16, 208
BstYI	RGATCY	2 cut(s)	16, 208
BsuRI	GGCC	2 cut(s)	144, 662
BtgZI	GCGATG	1 cut(s)	628
BtsCI	GGATG	3 cut(s)	46, 555, 747
BtsI	GCAGTG	1 cut(s)	114
BtsIMutI	CAGTG	1 cut(s)	114
Cac8I	GCNNGC	1 cut(s)	636
CfoI	GCGC	1 cut(s)	65
Cfr10I	RCCGGY	2 cut(s)	397, 647
Cfr13I	GGNCC	2 cut(s)	159, 551
CsiI	ACCWGGT	1 cut(s)	225
Csp6I	GTAC	4 cut(s)	4, 133, 165, 395
CspAI	ACCGGT	1 cut(s)	397
CviAII	CATG	1 cut(s)	757
CviQI	GTAC	4 cut(s)	4, 133, 165, 395
DdeI	CTNAG	2 cut(s)	47, 762
DpnI	GATC	4 cut(s)	18, 45, 210, 497
DpnII	GATC	4 cut(s)	16, 43, 208, 495
DriI	GACNNNNNGTC	1 cut(s)	713
Eam1104I	CTCTTC	1 cut(s)	120
Eam1105I	GACNNNNNGTC	1 cut(s)	713
EarI	CTCTTC	1 cut(s)	120
EciI	GGCGGA	1 cut(s)	564
Eco130I	CCWWGG	1 cut(s)	267
Eco47I	GGWCC	2 cut(s)	159, 551
Eco47III	AGCGCT	1 cut(s)	64
Eco88I	CYCGRG	2 cut(s)	560, 683
EcoRII	CCWGG	3 cut(s)	11, 191, 225
EcoT14I	CCWWGG	1 cut(s)	267
ErhI	CCWWGG	1 cut(s)	267
FaeI	CATG	1 cut(s)	760
FaiI	YATR	8 cut(s)	78, 299, 332, 381, 460, 486, 632, 758
FaqI	GGGAC	2 cut(s)	172, 398
FatI	CATG	1 cut(s)	756
FauI	CCCGC	1 cut(s)	585
FblI	GTMKAC	1 cut(s)	623
Fnu4HI	GCNGC	1 cut(s)	66
FokI	GGATG	3 cut(s)	53, 542, 754
Fsp4HI	GCNGC	1 cut(s)	66
FspBI	CTAG	1 cut(s)	603
GlaI	GCGC	1 cut(s)	64
GluI	GCNGC	1 cut(s)	66
HaeII	RGCGCY	1 cut(s)	66
HaeIII	GGCC	2 cut(s)	144, 662
HapII	CCGG	3 cut(s)	145, 398, 648
HhaI	GCGC	1 cut(s)	65
Hin1I	GRCGYC	1 cut(s)	590
Hin1II	CATG	1 cut(s)	760
Hin6I	GCGC	1 cut(s)	63
HinP1I	GCGC	1 cut(s)	63
HincII	GTYRAC	2 cut(s)	624, 753
HindII	GTYRAC	2 cut(s)	624, 753
HinfI	GANTC	5 cut(s)	102, 198, 370, 625, 722
HpaII	CCGG	3 cut(s)	145, 398, 648
HphI	GGTGA	3 cut(s)	181, 241, 598
Hpy166II	GTNNAC	4 cut(s)	133, 624, 707, 753
Hpy188I	TCNGA	3 cut(s)	291, 338, 595
Hpy188III	TCNNGA	5 cut(s)	122, 212, 464, 499, 603
Hpy8I	GTNNAC	4 cut(s)	133, 624, 707, 753
Hpy99I	CGWCG	2 cut(s)	29, 595
HpyAV	CCTTC	2 cut(s)	353, 688
HpyCH4III	ACNGT	1 cut(s)	321
HpyCH4IV	ACGT	2 cut(s)	590, 749
HpyCH4V	TGCA	3 cut(s)	68, 98, 449
HpyF10VI	GCNNNNNNNGC	3 cut(s)	455, 546, 644
HpyF3I	CTNAG	2 cut(s)	47, 762
HpySE526I	ACGT	2 cut(s)	590, 749
Hsp92I	GRCGYC	1 cut(s)	590
Hsp92II	CATG	1 cut(s)	760
HspAI	GCGC	1 cut(s)	63
Kzo9I	GATC	4 cut(s)	16, 43, 208, 495
LmnI	GCTCC	2 cut(s)	124, 240
Lsp1109I	GCAGC	1 cut(s)	52
LweI	GCATC	1 cut(s)	481
MabI	ACCWGGT	1 cut(s)	225
MaeI	CTAG	1 cut(s)	603
MaeII	ACGT	2 cut(s)	590, 749
MaeIII	GTNAC	1 cut(s)	586
MalI	GATC	4 cut(s)	18, 45, 210, 497
MboI	GATC	4 cut(s)	16, 43, 208, 495
MboII	GAAGA	6 cut(s)	84, 137, 433, 508, 625, 628
MflI	RGATCY	2 cut(s)	16, 208
MluCI	AATT	3 cut(s)	55, 91, 304
MlyI	GAGTC	1 cut(s)	619
MmeI	TCCRAC	1 cut(s)	573
MnlI	CCTC	4 cut(s)	121, 149, 225, 692
MseI	TTAA	3 cut(s)	308, 435, 525
MslI	CAYNNNNRTG	1 cut(s)	243
MspA1I	CMGCKG	1 cut(s)	314
MspI	CCGG	3 cut(s)	145, 398, 648
MspR9I	CCNGG	3 cut(s)	13, 193, 227
MvaI	CCWGG	3 cut(s)	13, 193, 227
MvnI	CGCG	1 cut(s)	326
MwoI	GCNNNNNNNGC	3 cut(s)	455, 546, 644
NdeII	GATC	4 cut(s)	16, 43, 208, 495
NlaIII	CATG	1 cut(s)	760
NlaIV	GGNNCC	7 cut(s)	18, 160, 236, 402, 415, 430, 553
NmeAIII	GCCGAG	1 cut(s)	525
NmuCI	GTSAC	1 cut(s)	586
PfeI	GAWTC	4 cut(s)	102, 198, 370, 722
PflFI	GACNNNGTC	1 cut(s)	748
PflMI	CCANNNNNTGG	1 cut(s)	273
PinAI	ACCGGT	1 cut(s)	397
PkrI	GCNGC	1 cut(s)	67
PleI	GAGTC	1 cut(s)	619
PpsI	GAGTC	1 cut(s)	619
Psp6I	CCWGG	3 cut(s)	11, 191, 225
PspGI	CCWGG	3 cut(s)	11, 191, 225
PspN4I	GGNNCC	7 cut(s)	18, 160, 236, 402, 415, 430, 553
PspPI	GGNCC	2 cut(s)	159, 551
PsuI	RGATCY	2 cut(s)	16, 208
PsyI	GACNNNGTC	1 cut(s)	748
PvuII	CAGCTG	1 cut(s)	314
RsaI	GTAC	4 cut(s)	5, 134, 166, 396
RsaNI	GTAC	4 cut(s)	4, 133, 165, 395
RseI	CAYNNNNRTG	1 cut(s)	243
SalI	GTCGAC	1 cut(s)	622
SaqAI	TTAA	3 cut(s)	308, 435, 525
SatI	GCNGC	1 cut(s)	66
Sau3AI	GATC	4 cut(s)	16, 43, 208, 495
Sau96I	GGNCC	2 cut(s)	159, 551
SchI	GAGTC	1 cut(s)	619
ScrFI	CCNGG	3 cut(s)	13, 193, 227
SexAI	ACCWGGT	1 cut(s)	225
SfaNI	GCATC	1 cut(s)	481
SfcI	CTRYAG	3 cut(s)	204, 345, 379
SgrAI	CRCCGGYG	1 cut(s)	647
SinI	GGWCC	2 cut(s)	159, 551
SmiMI	CAYNNNNRTG	1 cut(s)	243
Sse9I	AATT	3 cut(s)	55, 91, 304
SsiI	CCGC	4 cut(s)	7, 326, 549, 578
SspI	AATATT	1 cut(s)	262
SspMI	CTAG	1 cut(s)	603
StyD4I	CCNGG	3 cut(s)	11, 191, 225
StyI	CCWWGG	1 cut(s)	267
TaaI	ACNGT	1 cut(s)	321
TaiI	ACGT	2 cut(s)	593, 752
TaqI	TCGA	3 cut(s)	24, 611, 623
TasI	AATT	3 cut(s)	55, 91, 304
TfiI	GAWTC	4 cut(s)	102, 198, 370, 722
Tru1I	TTAA	3 cut(s)	308, 435, 525
Tru9I	TTAA	3 cut(s)	308, 435, 525
TscAI	CASTG	1 cut(s)	121
TseFI	GTSAC	1 cut(s)	586
TseI	GCWGC	1 cut(s)	65
Tsp45I	GTSAC	1 cut(s)	586
TspDTI	ATGAA	1 cut(s)	286
TspGWI	ACGGA	1 cut(s)	421
TspRI	CASTG	1 cut(s)	121
Tth111I	GACNNNGTC	1 cut(s)	748
Van91I	CCANNNNNTGG	1 cut(s)	273
VpaK11BI	GGWCC	2 cut(s)	159, 551
XapI	RAATTY	1 cut(s)	55
XbaI	TCTAGA	1 cut(s)	602
XmiI	GTMKAC	1 cut(s)	623
XspI	CTAG	1 cut(s)	603
ZraI	GACGTC	1 cut(s)	591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.