Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8362861.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 980

Gene Structure 980 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8362861.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 956 bp

atgattgcgctacaagttcttgagttagctcacaaccagttgtcaggtgagattcctgcatcgcttggccagcttaagaatctaggtgtgtttgatgcatcacataacagactgcagggtcatatcccagattcattctccaacttatcatttttggttcaaattgatttgtcttacaatgaattgactggggagattcccccaaggggacaactgagtacacttcctgctacccaatatgctcacaatccaggactctgtggggttccattgccagactgctcaagcagcaatgaccaaccaagcaccactccaagtgatgaggatgctgccaaagcaagtcgaaagtcatcagttgcatcatgggctaatagcattgttgtggggattcttatttccgttgcttcggtgtgtgttctgattgtgtggggcattgcaatgcgttcaaggcggaaggaagcacaagaggtgaagatgcttaaccgcttgcaggcatctcgcgcagcaaccacatggaaaatagacaaagagaaagaaccattgagcatcaatgttgctacttttcagaggcagctaaggaagctcaagttctcccaactcattgaggcaaccaatggcttctcagcagatagtcttataggttgtggaggtttcggagaagtgttcaaggcaacgctgaaggatggttcgagtgttgcaatcaagaaactcatacgattgagctgccaaggtgaccgtgagttcatggctgagatggaaactcttggaaagattaagcatagaaatcttgtgcccttattgggctactgcaaaattggtgaagagaggctgctagtctatgagttcatggagtatggaagcctcgaagaaatgctccatgggagaacaaggacgcgcgacagaaagatcctatcatgggaggaaaggaaaaagattgcaagaggtgcagctaaagg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0010051 GO:0010232 GO:0010233 GO:0010305 GO:0014070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048545 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

319

Amino Acids

35.14

Weight (kDa)

9.07

Isoelectric Point (pI)

31.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	117
AccII	CGCG	3 cut(s)	501, 895, 897
AciI	CCGC	2 cut(s)	451, 484
AclWI	GGATC	1 cut(s)	901
AcoI	YGGCCR	1 cut(s)	67
AcuI	CTGAAG	1 cut(s)	698
AfaI	GTAC	1 cut(s)	220
AfiI	CCNNNNNNNGG	4 cut(s)	206, 490, 800, 916
AflII	CTTAAG	1 cut(s)	74
AgsI	TTSAA	3 cut(s)	161, 447, 667
AjnI	CCWGG	1 cut(s)	250
AluBI	AGCT	6 cut(s)	29, 73, 574, 583, 723, 950
AluI	AGCT	6 cut(s)	29, 73, 574, 583, 723, 950
AlwI	GGATC	1 cut(s)	901
AoxI	GGCC	1 cut(s)	67
ApeKI	GCWGC	7 cut(s)	288, 329, 503, 571, 723, 829, 947
AspLEI	GCGC	3 cut(s)	10, 503, 897
AsuHPI	GGTGA	4 cut(s)	59, 481, 743, 830
BaeGI	GKGCMC	1 cut(s)	795
BalI	TGGCCA	1 cut(s)	69
BbvI	GCAGC	6 cut(s)	300, 316, 515, 583, 710, 816
BccI	CCATC	2 cut(s)	677, 748
BcgI	CGANNNNNNTGC	4 cut(s)	479, 513, 705, 739
BciT130I	CCWGG	1 cut(s)	252
BfaI	CTAG	2 cut(s)	83, 833
BfmI	CTRYAG	1 cut(s)	113
BfrI	CTTAAG	1 cut(s)	74
BisI	GCNGC	7 cut(s)	289, 330, 504, 572, 724, 830, 948
BlsI	GCNGC	7 cut(s)	290, 331, 505, 573, 725, 831, 949
Bme1390I	CCNGG	1 cut(s)	252
BmiI	GGNNCC	1 cut(s)	267
BmrFI	CCNGG	1 cut(s)	252
BmrI	ACTGGG	1 cut(s)	198
BmsI	GCATC	8 cut(s)	68, 85, 107, 316, 368, 465, 503, 555
BmuI	ACTGGG	1 cut(s)	198
Bpu10I	CCTNAGC	1 cut(s)	575
BpuEI	CTTGAG	3 cut(s)	41, 268, 569
BsaJI	CCNNGG	3 cut(s)	203, 727, 877
Bsc4I	CCNNNNNNNGG	4 cut(s)	206, 490, 800, 916
Bse1I	ACTGG	2 cut(s)	37, 193
Bse3DI	GCAATG	4 cut(s)	269, 298, 432, 444
BseBI	CCWGG	1 cut(s)	252
BseDI	CCNNGG	3 cut(s)	203, 727, 877
BseGI	GGATG	2 cut(s)	331, 688
BseLI	CCNNNNNNNGG	4 cut(s)	206, 490, 800, 916
BseMI	GCAATG	4 cut(s)	269, 298, 432, 444
BseMII	CTCAG	3 cut(s)	206, 636, 741
BseNI	ACTGG	2 cut(s)	37, 193
BseSI	GKGCMC	1 cut(s)	795
BseXI	GCAGC	6 cut(s)	300, 316, 515, 583, 710, 816
Bsh1236I	CGCG	3 cut(s)	501, 895, 897
BshFI	GGCC	1 cut(s)	69
BslFI	GGGAC	1 cut(s)	222
BslI	CCNNNNNNNGG	4 cut(s)	206, 490, 800, 916
BsmFI	GGGAC	1 cut(s)	222
BsnI	GGCC	1 cut(s)	69
Bsp1286I	GDGCHC	1 cut(s)	795
Bsp143I	GATC	1 cut(s)	906
Bsp19I	CCATGG	1 cut(s)	877
BspACI	CCGC	2 cut(s)	451, 484
BspANI	GGCC	1 cut(s)	69
BspCNI	CTCAG	3 cut(s)	207, 635, 742
BspFNI	CGCG	3 cut(s)	501, 895, 897
BspLI	GGNNCC	1 cut(s)	267
BspMAI	CTGCAG	1 cut(s)	117
BspPI	GGATC	1 cut(s)	901
BspTI	CTTAAG	1 cut(s)	74
BsrDI	GCAATG	4 cut(s)	269, 298, 432, 444
BsrI	ACTGG	2 cut(s)	37, 193
BssECI	CCNNGG	3 cut(s)	203, 727, 877
BssMI	GATC	1 cut(s)	906
BssT1I	CCWWGG	3 cut(s)	203, 727, 877
Bst2UI	CCWGG	1 cut(s)	252
Bst4CI	ACNGT	1 cut(s)	737
Bst6I	CTCTTC	1 cut(s)	816
BstAFI	CTTAAG	1 cut(s)	74
BstAPI	GCANNNNNTGC	1 cut(s)	944
BstC8I	GCNNGC	3 cut(s)	71, 488, 492
BstDEI	CTNAG	4 cut(s)	215, 575, 622, 750
BstDSI	CCRYGG	1 cut(s)	877
BstEII	GGTNACC	1 cut(s)	731
BstF5I	GGATG	2 cut(s)	331, 688
BstFNI	CGCG	3 cut(s)	501, 895, 897
BstHHI	GCGC	3 cut(s)	10, 503, 897
BstKTI	GATC	1 cut(s)	909
BstMBI	GATC	1 cut(s)	906
BstMWI	GCNNNNNNNGC	8 cut(s)	70, 288, 335, 365, 448, 500, 580, 944
BstNI	CCWGG	1 cut(s)	252
BstPI	GGTNACC	1 cut(s)	731
BstSCI	CCNGG	1 cut(s)	250
BstSFI	CTRYAG	1 cut(s)	113
BstSLI	GKGCMC	1 cut(s)	795
BstUI	CGCG	3 cut(s)	501, 895, 897
BstV1I	GCAGC	6 cut(s)	300, 316, 515, 583, 710, 816
BstX2I	RGATCY	1 cut(s)	906
BstYI	RGATCY	1 cut(s)	906
BsuRI	GGCC	1 cut(s)	69
BtgI	CCRYGG	1 cut(s)	877
BtgZI	GCGATG	1 cut(s)	45
BtsCI	GGATG	2 cut(s)	331, 688
Cac8I	GCNNGC	3 cut(s)	71, 488, 492
CfoI	GCGC	3 cut(s)	10, 503, 897
CseI	GACGC	1 cut(s)	901
Csp6I	GTAC	1 cut(s)	219
CviAII	CATG	6 cut(s)	363, 513, 745, 847, 878, 915
CviQI	GTAC	1 cut(s)	219
DdeI	CTNAG	4 cut(s)	215, 575, 622, 750
DpnI	GATC	1 cut(s)	908
DpnII	GATC	1 cut(s)	906
DrdI	GACNNNNNNGTC	1 cut(s)	117
DseDI	GACNNNNNNGTC	1 cut(s)	117
EaeI	YGGCCR	1 cut(s)	67
Eam1104I	CTCTTC	1 cut(s)	816
EarI	CTCTTC	1 cut(s)	816
EciI	GGCGGA	1 cut(s)	466
Eco130I	CCWWGG	3 cut(s)	203, 727, 877
Eco57I	CTGAAG	1 cut(s)	698
Eco91I	GGTNACC	1 cut(s)	731
EcoO65I	GGTNACC	1 cut(s)	731
EcoRII	CCWGG	1 cut(s)	250
EcoT14I	CCWWGG	3 cut(s)	203, 727, 877
EcoT22I	ATGCAT	1 cut(s)	100
ErhI	CCWWGG	3 cut(s)	203, 727, 877
FaeI	CATG	6 cut(s)	366, 516, 748, 850, 881, 918
FaqI	GGGAC	1 cut(s)	222
FatI	CATG	6 cut(s)	362, 512, 744, 846, 877, 914
Fnu4HI	GCNGC	7 cut(s)	289, 330, 504, 572, 724, 830, 948
FokI	GGATG	2 cut(s)	338, 695
Fsp4HI	GCNGC	7 cut(s)	289, 330, 504, 572, 724, 830, 948
FspBI	CTAG	2 cut(s)	83, 833
GlaI	GCGC	3 cut(s)	9, 502, 896
GluI	GCNGC	7 cut(s)	289, 330, 504, 572, 724, 830, 948
HaeIII	GGCC	1 cut(s)	69
HgaI	GACGC	1 cut(s)	901
HhaI	GCGC	3 cut(s)	10, 503, 897
Hin1II	CATG	6 cut(s)	366, 516, 748, 850, 881, 918
Hin6I	GCGC	3 cut(s)	8, 501, 895
HinP1I	GCGC	3 cut(s)	8, 501, 895
HinfI	GANTC	6 cut(s)	52, 79, 131, 196, 255, 388
HphI	GGTGA	4 cut(s)	59, 481, 743, 830
Hpy166II	GTNNAC	1 cut(s)	221
Hpy188I	TCNGA	3 cut(s)	420, 567, 656
Hpy188III	TCNNGA	2 cut(s)	20, 703
Hpy8I	GTNNAC	1 cut(s)	221
HpyAV	CCTTC	2 cut(s)	448, 673
HpyCH4III	ACNGT	1 cut(s)	737
HpyF10VI	GCNNNNNNNGC	8 cut(s)	70, 288, 335, 365, 448, 500, 580, 944
HpyF3I	CTNAG	4 cut(s)	215, 575, 622, 750
Hsp92II	CATG	6 cut(s)	366, 516, 748, 850, 881, 918
HspAI	GCGC	3 cut(s)	8, 501, 895
Kzo9I	GATC	1 cut(s)	906
LmnI	GCTCC	1 cut(s)	879
Lsp1109I	GCAGC	6 cut(s)	300, 316, 515, 583, 710, 816
LweI	GCATC	8 cut(s)	68, 85, 107, 316, 368, 465, 503, 555
MaeI	CTAG	2 cut(s)	83, 833
MaeIII	GTNAC	1 cut(s)	731
MalI	GATC	1 cut(s)	908
MboI	GATC	1 cut(s)	906
MboII	GAAGA	3 cut(s)	484, 833, 878
MflI	RGATCY	1 cut(s)	906
MhlI	GDGCHC	1 cut(s)	795
MlsI	TGGCCA	1 cut(s)	69
MluCI	AATT	3 cut(s)	162, 182, 813
MluNI	TGGCCA	1 cut(s)	69
MlyI	GAGTC	1 cut(s)	249
MmeI	TCCRAC	1 cut(s)	165
MnlI	CCTC	9 cut(s)	316, 460, 561, 598, 641, 819, 872, 913, 935
Mox20I	TGGCCA	1 cut(s)	69
Mph1103I	ATGCAT	1 cut(s)	100
MscI	TGGCCA	1 cut(s)	69
MseI	TTAA	3 cut(s)	75, 480, 774
MslI	CAYNNNNRTG	2 cut(s)	380, 437
Msp20I	TGGCCA	1 cut(s)	69
MspCI	CTTAAG	1 cut(s)	74
MspR9I	CCNGG	1 cut(s)	252
MvaI	CCWGG	1 cut(s)	252
MvnI	CGCG	3 cut(s)	501, 895, 897
MwoI	GCNNNNNNNGC	8 cut(s)	70, 288, 335, 365, 448, 500, 580, 944
NcoI	CCATGG	1 cut(s)	877
NdeII	GATC	1 cut(s)	906
NlaIII	CATG	6 cut(s)	366, 516, 748, 850, 881, 918
NlaIV	GGNNCC	1 cut(s)	267
NmuCI	GTSAC	1 cut(s)	731
NsiI	ATGCAT	1 cut(s)	100
PfeI	GAWTC	5 cut(s)	52, 79, 131, 196, 388
PfoI	TCCNGGA	1 cut(s)	250
PkrI	GCNGC	7 cut(s)	290, 331, 505, 573, 725, 831, 949
PleI	GAGTC	1 cut(s)	249
PpsI	GAGTC	1 cut(s)	249
Psp6I	CCWGG	1 cut(s)	250
PspEI	GGTNACC	1 cut(s)	731
PspGI	CCWGG	1 cut(s)	250
PspN4I	GGNNCC	1 cut(s)	267
PstI	CTGCAG	1 cut(s)	117
PsuI	RGATCY	1 cut(s)	906
RsaI	GTAC	1 cut(s)	220
RsaNI	GTAC	1 cut(s)	219
RseI	CAYNNNNRTG	2 cut(s)	380, 437
SaqAI	TTAA	3 cut(s)	75, 480, 774
SatI	GCNGC	7 cut(s)	289, 330, 504, 572, 724, 830, 948
Sau3AI	GATC	1 cut(s)	906
SchI	GAGTC	1 cut(s)	249
ScrFI	CCNGG	1 cut(s)	252
SduI	GDGCHC	1 cut(s)	795
SfaNI	GCATC	8 cut(s)	68, 85, 107, 316, 368, 465, 503, 555
SfcI	CTRYAG	1 cut(s)	113
SmiMI	CAYNNNNRTG	2 cut(s)	380, 437
SmlI	CTYRAG	4 cut(s)	20, 74, 283, 584
SmoI	CTYRAG	4 cut(s)	20, 74, 283, 584
Sse9I	AATT	3 cut(s)	162, 182, 813
SsiI	CCGC	2 cut(s)	451, 484
SspMI	CTAG	2 cut(s)	83, 833
StyD4I	CCNGG	1 cut(s)	250
StyI	CCWWGG	3 cut(s)	203, 727, 877
TaaI	ACNGT	1 cut(s)	737
TaqI	TCGA	3 cut(s)	343, 689, 864
TasI	AATT	3 cut(s)	162, 182, 813
TatI	WGTACW	1 cut(s)	218
TfiI	GAWTC	5 cut(s)	52, 79, 131, 196, 388
Tru1I	TTAA	3 cut(s)	75, 480, 774
Tru9I	TTAA	3 cut(s)	75, 480, 774
TseFI	GTSAC	1 cut(s)	731
TseI	GCWGC	7 cut(s)	288, 329, 503, 571, 723, 829, 947
Tsp45I	GTSAC	1 cut(s)	731
TspDTI	ATGAA	4 cut(s)	123, 195, 733, 835
TspGWI	ACGGA	1 cut(s)	388
Vha464I	CTTAAG	1 cut(s)	74
XspI	CTAG	2 cut(s)	83, 833
Zsp2I	ATGCAT	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.