Rmu_co8366889.1_g000001
WRKY Family

WRKY transcription factor

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8366889.1
N/A
Physical Location & Seq
Forward (+)
704 .. 1105
402 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8366889.1_g000001.1.cds

Sequence Viewer

Length: 309 bp
atgacttcttccttcactcacctcctcacaagcaacatgaacatgaacaattttgaccaggaccgaaccggcagctggagctggggactctccgaccgttcaacggaagccgaaatccccaagttcaagtcactccagccgccttctctccctctctctcctcctcctgcttccccttcttcttacttggttaacaaccctggttttagccctactgattttttcagctcacccatgtttcttactcactcaaatactcttccatctccgaccaccggagccttttcgagtcagattttcgattggatg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

103

Amino Acids

11.38

Weight (kDa)

4.91

Isoelectric Point (pI)

66.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 140
AfiI CCNNNNNNNGG 3 cut(s) 75, 103, 275
AgsI TTSAA 2 cut(s) 102, 127
AjnI CCWGG 2 cut(s) 57, 199
AluBI AGCT 3 cut(s) 75, 81, 228
AluI AGCT 3 cut(s) 75, 81, 228
ApeKI GCWGC 1 cut(s) 72
AspS9I GGNCC 1 cut(s) 61
AsuHPI GGTGA 2 cut(s) 11, 222
AvaII GGWCC 1 cut(s) 61
BbvI GCAGC 1 cut(s) 84
BccI CCATC 1 cut(s) 271
BciT130I CCWGG 2 cut(s) 59, 201
BisI GCNGC 2 cut(s) 73, 140
BlsI GCNGC 2 cut(s) 74, 141
Bme1390I CCNGG 2 cut(s) 59, 201
Bme18I GGWCC 1 cut(s) 61
BmgT120I GGNCC 1 cut(s) 61
BmiI GGNNCC 1 cut(s) 280
BmrFI CCNGG 2 cut(s) 59, 201
BpmI CTGGAG 2 cut(s) 97, 119
BsaJI CCNNGG 1 cut(s) 199
BsaWI WCCGGW 1 cut(s) 275
Bsc4I CCNNNNNNNGG 3 cut(s) 75, 103, 275
Bse118I RCCGGY 1 cut(s) 68
BseBI CCWGG 2 cut(s) 59, 201
BseDI CCNNGG 1 cut(s) 199
BseLI CCNNNNNNNGG 3 cut(s) 75, 103, 275
BseRI GAGGAG 3 cut(s) 14, 150, 153
BseXI GCAGC 1 cut(s) 84
BseYI CCCAGC 1 cut(s) 81
Bsh1285I CGRYCG 1 cut(s) 97
BsiEI CGRYCG 1 cut(s) 97
BsiSI CCGG 2 cut(s) 69, 276
BslFI GGGAC 1 cut(s) 99
BslI CCNNNNNNNGG 3 cut(s) 75, 103, 275
BsmFI GGGAC 1 cut(s) 99
BspACI CCGC 1 cut(s) 140
BspLI GGNNCC 1 cut(s) 280
BsrFI RCCGGY 1 cut(s) 68
BssAI RCCGGY 1 cut(s) 68
BssECI CCNNGG 1 cut(s) 199
Bst2UI CCWGG 2 cut(s) 59, 201
Bst4CI ACNGT 1 cut(s) 98
Bst6I CTCTTC 1 cut(s) 264
BstMCI CGRYCG 1 cut(s) 97
BstMWI GCNNNNNNNGC 1 cut(s) 78
BstNI CCWGG 2 cut(s) 59, 201
BstSCI CCNGG 2 cut(s) 57, 199
BstV1I GCAGC 1 cut(s) 84
Cfr10I RCCGGY 1 cut(s) 68
Cfr13I GGNCC 1 cut(s) 61
CviAII CATG 3 cut(s) 37, 43, 235
CviJI RGCY 7 cut(s) 75, 81, 110, 139, 210, 228, 281
CviKI_1 RGCY 7 cut(s) 75, 81, 110, 139, 210, 228, 281
Eam1104I CTCTTC 1 cut(s) 264
EarI CTCTTC 1 cut(s) 264
Eco47I GGWCC 1 cut(s) 61
EcoRII CCWGG 2 cut(s) 57, 199
FaeI CATG 3 cut(s) 40, 46, 238
FaiI YATR 3 cut(s) 38, 44, 236
FaqI GGGAC 1 cut(s) 99
FatI CATG 3 cut(s) 36, 42, 234
Fnu4HI GCNGC 2 cut(s) 73, 140
Fsp4HI GCNGC 2 cut(s) 73, 140
GluI GCNGC 2 cut(s) 73, 140
GsaI CCCAGC 1 cut(s) 85
GsuI CTGGAG 2 cut(s) 97, 119
HapII CCGG 2 cut(s) 69, 276
Hin1II CATG 3 cut(s) 40, 46, 238
HincII GTYRAC 1 cut(s) 193
HindII GTYRAC 1 cut(s) 193
HinfI GANTC 2 cut(s) 87, 289
HpaI GTTAAC 1 cut(s) 193
HpaII CCGG 2 cut(s) 69, 276
HphI GGTGA 2 cut(s) 11, 222
Hpy166II GTNNAC 1 cut(s) 193
Hpy188I TCNGA 3 cut(s) 94, 270, 294
Hpy8I GTNNAC 1 cut(s) 193
HpyAV CCTTC 3 cut(s) 22, 153, 186
HpyCH4III ACNGT 1 cut(s) 98
HpyF10VI GCNNNNNNNGC 1 cut(s) 78
Hsp92II CATG 3 cut(s) 40, 46, 238
KspAI GTTAAC 1 cut(s) 193
LmnI GCTCC 2 cut(s) 78, 278
Lsp1109I GCAGC 1 cut(s) 84
MaeIII GTNAC 1 cut(s) 129
MboII GAAGA 2 cut(s) 171, 251
MluCI AATT 1 cut(s) 49
MlyI GAGTC 2 cut(s) 81, 298
MmeI TCCRAC 2 cut(s) 117, 293
MnlI CCTC 5 cut(s) 32, 35, 162, 171, 174
MseI TTAA 1 cut(s) 192
MslI CAYNNNNRTG 1 cut(s) 41
MspA1I CMGCKG 1 cut(s) 75
MspI CCGG 2 cut(s) 69, 276
MspR9I CCNGG 2 cut(s) 59, 201
MvaI CCWGG 2 cut(s) 59, 201
MwoI GCNNNNNNNGC 1 cut(s) 78
NlaIII CATG 3 cut(s) 40, 46, 238
NlaIV GGNNCC 1 cut(s) 280
NmuCI GTSAC 1 cut(s) 129
PkrI GCNGC 2 cut(s) 74, 141
PleI GAGTC 2 cut(s) 81, 297
PpsI GAGTC 2 cut(s) 81, 297
Psp6I CCWGG 2 cut(s) 57, 199
PspFI CCCAGC 1 cut(s) 81
PspGI CCWGG 2 cut(s) 57, 199
PspN4I GGNNCC 1 cut(s) 280
PspPI GGNCC 1 cut(s) 61
PvuII CAGCTG 1 cut(s) 75
RseI CAYNNNNRTG 1 cut(s) 41
SaqAI TTAA 1 cut(s) 192
SatI GCNGC 2 cut(s) 73, 140
Sau96I GGNCC 1 cut(s) 61
SchI GAGTC 2 cut(s) 81, 298
ScrFI CCNGG 2 cut(s) 59, 201
SetI ASST 4 cut(s) 24, 77, 83, 230
SinI GGWCC 1 cut(s) 61
SmiMI CAYNNNNRTG 1 cut(s) 41
Sse9I AATT 1 cut(s) 49
SsiI CCGC 1 cut(s) 140
StyD4I CCNGG 2 cut(s) 57, 199
TaaI ACNGT 1 cut(s) 98
TaqI TCGA 2 cut(s) 287, 300
TaqII GACCGA 1 cut(s) 78
TasI AATT 1 cut(s) 49
TauI GCSGC 1 cut(s) 142
Tru1I TTAA 1 cut(s) 192
Tru9I TTAA 1 cut(s) 192
TseFI GTSAC 1 cut(s) 129
TseI GCWGC 1 cut(s) 72
Tsp45I GTSAC 1 cut(s) 129
TspDTI ATGAA 2 cut(s) 53, 59
TspGWI ACGGA 1 cut(s) 119
VpaK11BI GGWCC 1 cut(s) 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.