Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8374649.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 464

Gene Structure 464 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8374649.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 464 bp

gtgtgggttacagggacgtgaagtttcacctggaggacttcaacatgaaagagtggagagacgaggacagcgacacgccgttgaacgccttcgacctgatatcattctcctccggcttcgacatctcggggctgttccggaagccggaaatctccgactgcggggagcggttcgtgtcggcggagacgccggagaggatcatccagaaggtggaggaggtggcattggcggagggcatgacggtgatggagaagaagagctggggggcaaagctggcggggcagaatggtaatttgatcgtcgccattgggatttaccggttaacggagaagctggtggtggtggagttgaacaagcgggaaagaatagcggagaattgccagcagcaaatatggaaagacaagctgaggccgcagctgtcgtgtctgatatacaaaccggaagaaaaagtctccggtgaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0030054 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04113 ko04138 map04113 map04138

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

153

Amino Acids

17.53

Weight (kDa)

5.13

Isoelectric Point (pI)

24.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	210
AccBSI	CCGCTC	1 cut(s)	168
AccIII	TCCGGA	1 cut(s)	137
AciI	CCGC	8 cut(s)	161, 168, 181, 229, 277, 357, 370, 412
AclWI	GGATC	1 cut(s)	205
AcyI	GRCGYC	1 cut(s)	187
AfiI	CCNNNNNNNGG	4 cut(s)	144, 161, 210, 324
AgeI	ACCGGT	1 cut(s)	317
AgsI	TTSAA	3 cut(s)	42, 84, 351
AjiI	CACGTC	1 cut(s)	18
AjnI	CCWGG	1 cut(s)	29
AluBI	AGCT	5 cut(s)	260, 273, 333, 405, 417
AluI	AGCT	5 cut(s)	260, 273, 333, 405, 417
Alw26I	GTCTC	3 cut(s)	53, 178, 456
AlwI	GGATC	1 cut(s)	205
Ama87I	CYCGRG	1 cut(s)	126
Aor13HI	TCCGGA	1 cut(s)	137
AoxI	GGCC	1 cut(s)	409
ApeKI	GCWGC	2 cut(s)	384, 414
AsiGI	ACCGGT	1 cut(s)	317
Asp700I	GAANNNNTTC	1 cut(s)	88
AsuHPI	GGTGA	2 cut(s)	19, 255
AvaI	CYCGRG	1 cut(s)	126
BbvCI	CCTCAGC	1 cut(s)	406
BbvI	GCAGC	2 cut(s)	396, 426
BccI	CCATC	1 cut(s)	240
BceAI	ACGGC	1 cut(s)	63
BciT130I	CCWGG	1 cut(s)	31
BcoDI	GTCTC	3 cut(s)	53, 178, 456
BisI	GCNGC	3 cut(s)	385, 412, 415
BlsI	GCNGC	3 cut(s)	386, 413, 416
Bme1390I	CCNGG	1 cut(s)	31
BmeT110I	CYCGRG	1 cut(s)	126
BmgBI	CACGTC	1 cut(s)	18
BmrFI	CCNGG	1 cut(s)	31
BpmI	CTGGAG	1 cut(s)	52
Bpu10I	CCTNAGC	1 cut(s)	406
BsaHI	GRCGYC	1 cut(s)	187
BsaWI	WCCGGW	4 cut(s)	137, 317, 438, 454
Bsc4I	CCNNNNNNNGG	4 cut(s)	144, 161, 210, 324
Bse118I	RCCGGY	1 cut(s)	317
BseAI	TCCGGA	1 cut(s)	137
BseBI	CCWGG	1 cut(s)	31
BseGI	GGATG	1 cut(s)	200
BseLI	CCNNNNNNNGG	4 cut(s)	144, 161, 210, 324
BseMII	CTCAG	1 cut(s)	397
BseRI	GAGGAG	2 cut(s)	99, 229
BseXI	GCAGC	2 cut(s)	396, 426
BseYI	CCCAGC	1 cut(s)	260
BshFI	GGCC	1 cut(s)	411
BshTI	ACCGGT	1 cut(s)	317
BsiHKCI	CYCGRG	1 cut(s)	126
BsiSI	CCGG	7 cut(s)	113, 138, 145, 190, 318, 439, 455
BslFI	GGGAC	1 cut(s)	28
BslI	CCNNNNNNNGG	4 cut(s)	144, 161, 210, 324
BsmAI	GTCTC	3 cut(s)	53, 178, 456
BsmBI	CGTCTC	2 cut(s)	53, 178
BsmFI	GGGAC	1 cut(s)	28
BsnI	GGCC	1 cut(s)	411
BsoBI	CYCGRG	1 cut(s)	126
Bsp13I	TCCGGA	1 cut(s)	137
Bsp143I	GATC	2 cut(s)	197, 296
BspACI	CCGC	8 cut(s)	161, 168, 181, 229, 277, 357, 370, 412
BspANI	GGCC	1 cut(s)	411
BspCNI	CTCAG	1 cut(s)	398
BspEI	TCCGGA	1 cut(s)	137
BspPI	GGATC	1 cut(s)	205
BspQI	GCTCTTC	1 cut(s)	250
BsrBI	CCGCTC	1 cut(s)	168
BsrFI	RCCGGY	1 cut(s)	317
BssAI	RCCGGY	1 cut(s)	317
BssMI	GATC	2 cut(s)	197, 296
BssNI	GRCGYC	1 cut(s)	187
Bst2UI	CCWGG	1 cut(s)	31
Bst4CI	ACNGT	1 cut(s)	243
Bst6I	CTCTTC	1 cut(s)	250
BstACI	GRCGYC	1 cut(s)	187
BstC8I	GCNNGC	2 cut(s)	275, 382
BstDEI	CTNAG	1 cut(s)	406
BstF5I	GGATG	1 cut(s)	200
BstKTI	GATC	2 cut(s)	200, 299
BstMAI	GTCTC	3 cut(s)	53, 178, 456
BstMBI	GATC	2 cut(s)	197, 296
BstMWI	GCNNNNNNNGC	3 cut(s)	274, 279, 411
BstNI	CCWGG	1 cut(s)	31
BstSCI	CCNGG	1 cut(s)	29
BstV1I	GCAGC	2 cut(s)	396, 426
BsuRI	GGCC	1 cut(s)	411
BtrI	CACGTC	1 cut(s)	18
BtsCI	GGATG	1 cut(s)	200
Cac8I	GCNNGC	2 cut(s)	275, 382
Cfr10I	RCCGGY	1 cut(s)	317
CseI	GACGC	1 cut(s)	195
CspAI	ACCGGT	1 cut(s)	317
CviAII	CATG	2 cut(s)	45, 237
CviJI	RGCY	9 cut(s)	116, 132, 144, 260, 273, 333, 405, 411, 417
CviKI_1	RGCY	9 cut(s)	116, 132, 144, 260, 273, 333, 405, 411, 417
DdeI	CTNAG	1 cut(s)	406
DpnI	GATC	2 cut(s)	199, 298
DpnII	GATC	2 cut(s)	197, 296
Eam1104I	CTCTTC	1 cut(s)	250
EarI	CTCTTC	1 cut(s)	250
EciI	GGCGGA	2 cut(s)	196, 244
Eco32I	GATATC	1 cut(s)	101
Eco88I	CYCGRG	1 cut(s)	126
EcoRII	CCWGG	1 cut(s)	29
EcoRV	GATATC	1 cut(s)	101
Esp3I	CGTCTC	2 cut(s)	53, 178
FaeI	CATG	2 cut(s)	48, 240
FaiI	YATR	4 cut(s)	46, 238, 393, 432
FaqI	GGGAC	1 cut(s)	28
FatI	CATG	2 cut(s)	44, 236
FauI	CCCGC	3 cut(s)	154, 270, 350
Fnu4HI	GCNGC	3 cut(s)	385, 412, 415
FokI	GGATG	1 cut(s)	187
Fsp4HI	GCNGC	3 cut(s)	385, 412, 415
GluI	GCNGC	3 cut(s)	385, 412, 415
GsaI	CCCAGC	1 cut(s)	264
GsuI	CTGGAG	1 cut(s)	52
HaeIII	GGCC	1 cut(s)	411
HapII	CCGG	7 cut(s)	113, 138, 145, 190, 318, 439, 455
HgaI	GACGC	1 cut(s)	195
Hin1I	GRCGYC	1 cut(s)	187
Hin1II	CATG	2 cut(s)	48, 240
HincII	GTYRAC	1 cut(s)	323
HindII	GTYRAC	1 cut(s)	323
HpaI	GTTAAC	1 cut(s)	323
HpaII	CCGG	7 cut(s)	113, 138, 145, 190, 318, 439, 455
HphI	GGTGA	2 cut(s)	19, 255
Hpy166II	GTNNAC	1 cut(s)	323
Hpy188I	TCNGA	2 cut(s)	156, 428
Hpy188III	TCNNGA	2 cut(s)	138, 204
Hpy8I	GTNNAC	1 cut(s)	323
Hpy99I	CGWCG	1 cut(s)	304
HpyAV	CCTTC	2 cut(s)	99, 201
HpyCH4III	ACNGT	1 cut(s)	243
HpyCH4IV	ACGT	1 cut(s)	17
HpyF10VI	GCNNNNNNNGC	3 cut(s)	274, 279, 411
HpyF3I	CTNAG	1 cut(s)	406
HpySE526I	ACGT	1 cut(s)	17
Hsp92I	GRCGYC	1 cut(s)	187
Hsp92II	CATG	2 cut(s)	48, 240
Kpn2I	TCCGGA	1 cut(s)	137
KspAI	GTTAAC	1 cut(s)	323
Kzo9I	GATC	2 cut(s)	197, 296
LguI	GCTCTTC	1 cut(s)	250
LmnI	GCTCC	1 cut(s)	165
Lsp1109I	GCAGC	2 cut(s)	396, 426
MaeII	ACGT	1 cut(s)	17
MaeIII	GTNAC	1 cut(s)	7
MalI	GATC	2 cut(s)	199, 298
MbiI	CCGCTC	1 cut(s)	168
MboI	GATC	2 cut(s)	197, 296
MboII	GAAGA	3 cut(s)	264, 267, 454
MluCI	AATT	2 cut(s)	291, 375
MmeI	TCCRAC	1 cut(s)	179
MnlI	CCTC	8 cut(s)	27, 57, 120, 188, 207, 210, 225, 401
MroI	TCCGGA	1 cut(s)	137
MroXI	GAANNNNTTC	1 cut(s)	88
MseI	TTAA	1 cut(s)	322
MslI	CAYNNNNRTG	1 cut(s)	241
MspA1I	CMGCKG	1 cut(s)	417
MspI	CCGG	7 cut(s)	113, 138, 145, 190, 318, 439, 455
MspR9I	CCNGG	1 cut(s)	31
MvaI	CCWGG	1 cut(s)	31
MwoI	GCNNNNNNNGC	3 cut(s)	274, 279, 411
NdeII	GATC	2 cut(s)	197, 296
NlaIII	CATG	2 cut(s)	48, 240
PciSI	GCTCTTC	1 cut(s)	250
PcsI	WCGNNNNNNNCGW	1 cut(s)	68
PdmI	GAANNNNTTC	1 cut(s)	88
PflMI	CCANNNNNTGG	1 cut(s)	210
PinAI	ACCGGT	1 cut(s)	317
PkrI	GCNGC	3 cut(s)	386, 413, 416
Psp6I	CCWGG	1 cut(s)	29
PspFI	CCCAGC	1 cut(s)	260
PspGI	CCWGG	1 cut(s)	29
PvuII	CAGCTG	1 cut(s)	417
RseI	CAYNNNNRTG	1 cut(s)	241
SapI	GCTCTTC	1 cut(s)	250
SaqAI	TTAA	1 cut(s)	322
SatI	GCNGC	3 cut(s)	385, 412, 415
Sau3AI	GATC	2 cut(s)	197, 296
ScrFI	CCNGG	1 cut(s)	31
SmiMI	CAYNNNNRTG	1 cut(s)	241
Sse9I	AATT	2 cut(s)	291, 375
SsiI	CCGC	8 cut(s)	161, 168, 181, 229, 277, 357, 370, 412
StyD4I	CCNGG	1 cut(s)	29
TaaI	ACNGT	1 cut(s)	243
TaiI	ACGT	1 cut(s)	20
TaqI	TCGA	2 cut(s)	92, 119
TasI	AATT	2 cut(s)	291, 375
TauI	GCSGC	1 cut(s)	414
Tru1I	TTAA	1 cut(s)	322
Tru9I	TTAA	1 cut(s)	322
TseI	GCWGC	2 cut(s)	384, 414
TspDTI	ATGAA	1 cut(s)	61
TspGWI	ACGGA	1 cut(s)	340
Van91I	CCANNNNNTGG	1 cut(s)	210
XmnI	GAANNNNTTC	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.