Rmu_co8376163.1_g000001
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8376163.1
N/A
Physical Location & Seq
Forward (+)
461 .. 1146
686 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8376163.1_g000001.1.cds

Sequence Viewer

Length: 686 bp
atgaagacaaaagtgcttctgttcttcctcctccctctcctcctcttctcctccacctcctcctccctcacccaagaaggcctctacctccaacacatcaaacactccctctccgaccccgactcctccctctcctcctggaacgaccaagacgccaccccttgctcatgggacggcatcacatgcaacccttcctcccacgtcatcacctccgtcgacctctccggcttcaacctcttcggccctttcccctccctcctctgccgcctccccaacctcaccttcctctccctctacaacaactccatcaactccaccctaccctccgacatctccacgtgtcagaacctccaacacctcgacctctcccagaacctcctcaccggctccctcccctccaaccttgccgacctccccaacctccgctacctcgacctcaccggcaacaacttctcgggagaaattcccgagtctttcgggagattccaaaaactcgaggtcctctctctcgtctacaacctcctcgacagcgccctgcccccatttctcggcaatatctcgtccctcaaaatgctcaacctttcttacaacccgtttttcccgggtcggatcccgcccgagctcggaaacttaacgaacctcgaggtcctctggctgaccgagtgtaacttagtcggcgaaatacc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase

Protein Analysis

229

Amino Acids

25.27

Weight (kDa)

4.56

Isoelectric Point (pI)

43.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 641
AccI GTMKAC 2 cut(s) 216, 513
AciI CCGC 3 cut(s) 265, 424, 614
AclWI GGATC 2 cut(s) 604, 617
AcsI RAATTY 1 cut(s) 462
AcvI CACGTG 1 cut(s) 339
AcyI GRCGYC 1 cut(s) 153
AfiI CCNNNNNNNGG 2 cut(s) 548, 623
AflIII ACRYGT 1 cut(s) 338
AgsI TTSAA 1 cut(s) 232
AjiI CACGTC 1 cut(s) 202
AjnI CCWGG 1 cut(s) 137
AjuI GAANNNNNNNTTGG 2 cut(s) 266, 298
AluBI AGCT 1 cut(s) 622
AluI AGCT 1 cut(s) 622
Alw21I GWGCWC 1 cut(s) 624
AlwI GGATC 2 cut(s) 604, 617
Ama87I CYCGRG 6 cut(s) 454, 467, 494, 601, 617, 641
AoxI GGCC 2 cut(s) 79, 241
ApoI RAATTY 1 cut(s) 462
AspLEI GCGC 1 cut(s) 533
AspS9I GGNCC 3 cut(s) 242, 499, 646
AsuC2I CCSGG 2 cut(s) 602, 603
AsuHPI GGTGA 5 cut(s) 61, 199, 271, 373, 430
AvaI CYCGRG 6 cut(s) 454, 467, 494, 601, 617, 641
AvaII GGWCC 2 cut(s) 499, 646
BamHI GGATCC 1 cut(s) 609
BanII GRGCYC 1 cut(s) 624
BbrPI CACGTG 1 cut(s) 339
BbsI GAAGAC 1 cut(s) 11
Bbv12I GWGCWC 1 cut(s) 624
BccI CCATC 1 cut(s) 314
BceAI ACGGC 1 cut(s) 190
BciT130I CCWGG 1 cut(s) 139
BcnI CCSGG 2 cut(s) 602, 603
BfoI RGCGCY 1 cut(s) 534
BisI GCNGC 1 cut(s) 265
BlsI GCNGC 1 cut(s) 266
Bme1390I CCNGG 3 cut(s) 139, 602, 603
Bme18I GGWCC 2 cut(s) 499, 646
BmeT110I CYCGRG 6 cut(s) 454, 467, 494, 601, 617, 641
BmgBI CACGTC 1 cut(s) 202
BmgT120I GGNCC 3 cut(s) 242, 499, 646
BmiI GGNNCC 2 cut(s) 388, 611
BmrFI CCNGG 3 cut(s) 139, 602, 603
BmsI GCATC 1 cut(s) 186
BpiI GAAGAC 1 cut(s) 11
BplI GAGNNNNNCTC 2 cut(s) 488, 520
BpuMI CCSGG 2 cut(s) 602, 603
BsaAI YACGTR 1 cut(s) 339
BsaHI GRCGYC 1 cut(s) 153
BsaJI CCNNGG 1 cut(s) 601
BsaXI ACNNNNNCTCC 8 cut(s) 95, 107, 125, 137, 179, 209, 287, 317
Bsc4I CCNNNNNNNGG 2 cut(s) 548, 623
Bse118I RCCGGY 2 cut(s) 383, 440
BseBI CCWGG 1 cut(s) 139
BseDI CCNNGG 1 cut(s) 601
BseLI CCNNNNNNNGG 2 cut(s) 548, 623
BshFI GGCC 2 cut(s) 81, 243
BsiHKAI GWGCWC 1 cut(s) 624
BsiHKCI CYCGRG 6 cut(s) 454, 467, 494, 601, 617, 641
BsiSI CCGG 4 cut(s) 225, 384, 441, 602
BslFI GGGAC 2 cut(s) 185, 547
BslI CCNNNNNNNGG 2 cut(s) 548, 623
BsmFI GGGAC 2 cut(s) 185, 547
BsnI GGCC 2 cut(s) 81, 243
BsoBI CYCGRG 6 cut(s) 454, 467, 494, 601, 617, 641
Bsp1286I GDGCHC 1 cut(s) 624
Bsp143I GATC 1 cut(s) 609
BspACI CCGC 3 cut(s) 265, 424, 614
BspANI GGCC 2 cut(s) 81, 243
BspLI GGNNCC 2 cut(s) 388, 611
BspPI GGATC 2 cut(s) 604, 617
BsrFI RCCGGY 2 cut(s) 383, 440
BssAI RCCGGY 2 cut(s) 383, 440
BssECI CCNNGG 1 cut(s) 601
BssMI GATC 1 cut(s) 609
BssNI GRCGYC 1 cut(s) 153
Bst2UI CCWGG 1 cut(s) 139
Bst6I CTCTTC 2 cut(s) 50, 242
BstACI GRCGYC 1 cut(s) 153
BstAPI GCANNNNNTGC 1 cut(s) 183
BstBAI YACGTR 1 cut(s) 339
BstDEI CTNAG 1 cut(s) 670
BstH2I RGCGCY 1 cut(s) 534
BstHHI GCGC 1 cut(s) 533
BstKTI GATC 1 cut(s) 612
BstMBI GATC 1 cut(s) 609
BstMWI GCNNNNNNNGC 1 cut(s) 183
BstNI CCWGG 1 cut(s) 139
BstNSI RCATGY 1 cut(s) 186
BstSCI CCNGG 3 cut(s) 137, 600, 601
BstV2I GAAGAC 1 cut(s) 11
BstX2I RGATCY 1 cut(s) 609
BstYI RGATCY 1 cut(s) 609
BsuRI GGCC 2 cut(s) 81, 243
BtrI CACGTC 1 cut(s) 202
CfoI GCGC 1 cut(s) 533
Cfr10I RCCGGY 2 cut(s) 383, 440
Cfr13I GGNCC 3 cut(s) 242, 499, 646
Cfr9I CCCGGG 1 cut(s) 601
CseI GACGC 1 cut(s) 161
CviAII CATG 2 cut(s) 168, 183
CviJI RGCY 6 cut(s) 81, 228, 243, 387, 622, 655
CviKI_1 RGCY 6 cut(s) 81, 228, 243, 387, 622, 655
DdeI CTNAG 1 cut(s) 670
DpnI GATC 1 cut(s) 611
DpnII GATC 1 cut(s) 609
Eam1104I CTCTTC 2 cut(s) 50, 242
EarI CTCTTC 2 cut(s) 50, 242
Ecl136II GAGCTC 1 cut(s) 622
Eco147I AGGCCT 1 cut(s) 81
Eco24I GRGCYC 1 cut(s) 624
Eco47I GGWCC 2 cut(s) 499, 646
Eco53kI GAGCTC 1 cut(s) 622
Eco72I CACGTG 1 cut(s) 339
Eco88I CYCGRG 6 cut(s) 454, 467, 494, 601, 617, 641
EcoICRI GAGCTC 1 cut(s) 622
EcoO109I RGGNCCY 2 cut(s) 499, 646
EcoRII CCWGG 1 cut(s) 137
EcoT38I GRGCYC 1 cut(s) 624
FaeI CATG 2 cut(s) 171, 186
FaiI YATR 2 cut(s) 169, 184
FaqI GGGAC 2 cut(s) 185, 547
FatI CATG 2 cut(s) 167, 182
FauI CCCGC 1 cut(s) 621
FblI GTMKAC 2 cut(s) 216, 513
Fnu4HI GCNGC 1 cut(s) 265
FriOI GRGCYC 1 cut(s) 624
Fsp4HI GCNGC 1 cut(s) 265
GlaI GCGC 1 cut(s) 532
GluI GCNGC 1 cut(s) 265
HaeII RGCGCY 1 cut(s) 534
HaeIII GGCC 2 cut(s) 81, 243
HapII CCGG 4 cut(s) 225, 384, 441, 602
HgaI GACGC 1 cut(s) 161
HhaI GCGC 1 cut(s) 533
Hin1I GRCGYC 1 cut(s) 153
Hin1II CATG 2 cut(s) 171, 186
Hin6I GCGC 1 cut(s) 531
HinP1I GCGC 1 cut(s) 531
HincII GTYRAC 1 cut(s) 217
HindII GTYRAC 1 cut(s) 217
HinfI GANTC 3 cut(s) 122, 470, 483
HpaII CCGG 4 cut(s) 225, 384, 441, 602
HphI GGTGA 5 cut(s) 61, 199, 271, 373, 430
Hpy166II GTNNAC 2 cut(s) 217, 514
Hpy188I TCNGA 5 cut(s) 115, 328, 345, 609, 626
Hpy188III TCNNGA 3 cut(s) 456, 467, 478
Hpy8I GTNNAC 2 cut(s) 217, 514
Hpy99I CGWCG 1 cut(s) 218
HpyAV CCTTC 3 cut(s) 71, 201, 292
HpyCH4IV ACGT 2 cut(s) 201, 338
HpyCH4V TGCA 1 cut(s) 186
HpyF10VI GCNNNNNNNGC 1 cut(s) 183
HpyF3I CTNAG 1 cut(s) 670
HpySE526I ACGT 2 cut(s) 201, 338
Hsp92I GRCGYC 1 cut(s) 153
Hsp92II CATG 2 cut(s) 171, 186
HspAI GCGC 1 cut(s) 531
Kzo9I GATC 1 cut(s) 609
LmnI GCTCC 1 cut(s) 392
LpnPI CCDG 9 cut(s) 124, 151, 238, 383, 397, 454, 548, 615, 637
LweI GCATC 1 cut(s) 186
MaeII ACGT 2 cut(s) 201, 338
MaeIII GTNAC 1 cut(s) 665
MalI GATC 1 cut(s) 611
MboI GATC 1 cut(s) 609
MboII GAAGA 4 cut(s) 16, 16, 37, 229
MflI RGATCY 1 cut(s) 609
MhlI GDGCHC 1 cut(s) 624
MluCI AATT 1 cut(s) 462
MlyI GAGTC 2 cut(s) 116, 479
MmeI TCCRAC 6 cut(s) 115, 138, 351, 376, 423, 587
MseI TTAA 1 cut(s) 632
MspI CCGG 4 cut(s) 225, 384, 441, 602
MspR9I CCNGG 3 cut(s) 139, 602, 603
MvaI CCWGG 1 cut(s) 139
MwoI GCNNNNNNNGC 1 cut(s) 183
NciI CCSGG 2 cut(s) 602, 603
NdeII GATC 1 cut(s) 609
NlaIII CATG 2 cut(s) 171, 186
NlaIV GGNNCC 2 cut(s) 388, 611
NmeAIII GCCGAG 1 cut(s) 528
NspI RCATGY 1 cut(s) 186
PaeR7I CTCGAG 2 cut(s) 494, 641
PceI AGGCCT 1 cut(s) 81
PfeI GAWTC 1 cut(s) 483
PfoI TCCNGGA 1 cut(s) 137
PkrI GCNGC 1 cut(s) 266
PleI GAGTC 2 cut(s) 116, 478
PmaCI CACGTG 1 cut(s) 339
PmlI CACGTG 1 cut(s) 339
PpsI GAGTC 2 cut(s) 116, 478
Ppu21I YACGTR 1 cut(s) 339
PpuMI RGGWCCY 2 cut(s) 499, 646
Psp124BI GAGCTC 1 cut(s) 624
Psp5II RGGWCCY 2 cut(s) 499, 646
Psp6I CCWGG 1 cut(s) 137
PspCI CACGTG 1 cut(s) 339
PspGI CCWGG 1 cut(s) 137
PspN4I GGNNCC 2 cut(s) 388, 611
PspPI GGNCC 3 cut(s) 242, 499, 646
PspPPI RGGWCCY 2 cut(s) 499, 646
PspXI VCTCGAGB 2 cut(s) 494, 641
PsuI RGATCY 1 cut(s) 609
SacI GAGCTC 1 cut(s) 624
SalI GTCGAC 1 cut(s) 215
SaqAI TTAA 1 cut(s) 632
SatI GCNGC 1 cut(s) 265
Sau3AI GATC 1 cut(s) 609
Sau96I GGNCC 3 cut(s) 242, 499, 646
SchI GAGTC 2 cut(s) 116, 479
ScrFI CCNGG 3 cut(s) 139, 602, 603
SduI GDGCHC 1 cut(s) 624
SfaNI GCATC 1 cut(s) 186
Sfr274I CTCGAG 2 cut(s) 494, 641
SinI GGWCC 2 cut(s) 499, 646
SlaI CTCGAG 2 cut(s) 494, 641
SmaI CCCGGG 1 cut(s) 603
SmlI CTYRAG 2 cut(s) 494, 641
SmoI CTYRAG 2 cut(s) 494, 641
Sse9I AATT 1 cut(s) 462
SseBI AGGCCT 1 cut(s) 81
SsiI CCGC 3 cut(s) 265, 424, 614
SstI GAGCTC 1 cut(s) 624
StuI AGGCCT 1 cut(s) 81
StyD4I CCNGG 3 cut(s) 137, 600, 601
TaiI ACGT 2 cut(s) 204, 341
TaqI TCGA 6 cut(s) 216, 360, 432, 495, 525, 642
TaqII GACCGA 1 cut(s) 674
TasI AATT 1 cut(s) 462
TauI GCSGC 1 cut(s) 267
TfiI GAWTC 1 cut(s) 483
Tru1I TTAA 1 cut(s) 632
Tru9I TTAA 1 cut(s) 632
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 202
TspMI CCCGGG 1 cut(s) 601
VpaK11BI GGWCC 2 cut(s) 499, 646
XapI RAATTY 1 cut(s) 462
XceI RCATGY 1 cut(s) 186
XhoI CTCGAG 2 cut(s) 494, 641
XmaI CCCGGG 1 cut(s) 601
XmiI GTMKAC 2 cut(s) 216, 513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.