Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8395989.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 570

Gene Structure 570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8395989.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

catggtgataactccagacatagatcaactgatgatgcgccatcatccaaagatgtgcaacctgattcagaaagaatccgaagttcatctagaaatggcagcacctcaaagaggcctgtcatatcaagcagtaggccaagctcctctggtgagcctagtgagagccggtcaagccggctggtctcaagcagtggtcgcctgtcaaccacccaaaggacacctgggtatgaatcaaaagtgtcttatactcgtacttcagctgctagaggcggtcgtgatgatgcacttaggagctttgagcttctttctatcggtacggggaagaggaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008360 GO:0009266 GO:0009409 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009826 GO:0009850 GO:0009987 GO:0010033 GO:0010817 GO:0014070 GO:0016043 GO:0016049 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022603 GO:0022604 GO:0022622 GO:0032501 GO:0032502 GO:0032989 GO:0033993 GO:0036211 GO:0040007 GO:0042221 GO:0042445 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048364 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051179 GO:0051234 GO:0060560 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0098657 GO:0099402 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04068 ko04310 ko04340 ko04341 ko04390 ko04391 ko04392 ko04540 ko04710 ko04711 map04068 map04310 map04340 map04341 map04390 map04391 map04392 map04540 map04710 map04711

Pfam Domains

Protein Families

Pkinase

Protein Analysis

110

Amino Acids

11.86

Weight (kDa)

11.04

Isoelectric Point (pI)

77.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	270
AcuI	CTGAAG	1 cut(s)	240
AfaI	GTAC	2 cut(s)	253, 316
AfiI	CCNNNNNNNGG	2 cut(s)	111, 213
AjnI	CCWGG	1 cut(s)	220
AluBI	AGCT	4 cut(s)	141, 260, 294, 301
AluI	AGCT	4 cut(s)	141, 260, 294, 301
Alw26I	GTCTC	1 cut(s)	187
AoxI	GGCC	2 cut(s)	113, 134
ApeKI	GCWGC	2 cut(s)	99, 260
AspLEI	GCGC	1 cut(s)	40
AsuHPI	GGTGA	2 cut(s)	17, 161
BbvI	GCAGC	2 cut(s)	111, 247
BccI	CCATC	1 cut(s)	49
BciT130I	CCWGG	1 cut(s)	222
BcoDI	GTCTC	1 cut(s)	187
BfaI	CTAG	3 cut(s)	90, 156, 264
BisI	GCNGC	2 cut(s)	100, 261
BlsI	GCNGC	2 cut(s)	101, 262
Bme1390I	CCNGG	1 cut(s)	222
BmrFI	CCNGG	1 cut(s)	222
BmsI	GCATC	2 cut(s)	25, 271
BpuEI	CTTGAG	1 cut(s)	169
BsaI	GGTCTC	1 cut(s)	187
BsaJI	CCNNGG	1 cut(s)	221
Bsc4I	CCNNNNNNNGG	2 cut(s)	111, 213
Bse118I	RCCGGY	2 cut(s)	165, 174
BseBI	CCWGG	1 cut(s)	222
BseDI	CCNNGG	1 cut(s)	221
BseGI	GGATG	1 cut(s)	44
BseLI	CCNNNNNNNGG	2 cut(s)	111, 213
BseRI	GAGGAG	1 cut(s)	133
BseXI	GCAGC	2 cut(s)	111, 247
Bsh1285I	CGRYCG	1 cut(s)	274
BshFI	GGCC	2 cut(s)	115, 136
BsiEI	CGRYCG	1 cut(s)	274
BsiSI	CCGG	2 cut(s)	166, 175
BslI	CCNNNNNNNGG	2 cut(s)	111, 213
BsmAI	GTCTC	1 cut(s)	187
BsnI	GGCC	2 cut(s)	115, 136
Bso31I	GGTCTC	1 cut(s)	187
Bsp143I	GATC	1 cut(s)	23
BspACI	CCGC	1 cut(s)	270
BspANI	GGCC	2 cut(s)	115, 136
BspTNI	GGTCTC	1 cut(s)	187
BsrFI	RCCGGY	2 cut(s)	165, 174
BssAI	RCCGGY	2 cut(s)	165, 174
BssECI	CCNNGG	1 cut(s)	221
BssMI	GATC	1 cut(s)	23
Bst2UI	CCWGG	1 cut(s)	222
Bst6I	CTCTTC	1 cut(s)	317
BstC8I	GCNNGC	1 cut(s)	176
BstDEI	CTNAG	1 cut(s)	287
BstENI	CCTNNNNNAGG	1 cut(s)	109
BstF5I	GGATG	1 cut(s)	44
BstHHI	GCGC	1 cut(s)	40
BstKTI	GATC	1 cut(s)	26
BstMAI	GTCTC	1 cut(s)	187
BstMBI	GATC	1 cut(s)	23
BstMCI	CGRYCG	1 cut(s)	274
BstMWI	GCNNNNNNNGC	2 cut(s)	171, 195
BstNI	CCWGG	1 cut(s)	222
BstSCI	CCNGG	1 cut(s)	220
BstV1I	GCAGC	2 cut(s)	111, 247
BsuRI	GGCC	2 cut(s)	115, 136
BtsCI	GGATG	1 cut(s)	44
BtsI	GCAGTG	1 cut(s)	196
BtsIMutI	CAGTG	1 cut(s)	196
Cac8I	GCNNGC	1 cut(s)	176
CfoI	GCGC	1 cut(s)	40
Cfr10I	RCCGGY	2 cut(s)	165, 174
Csp6I	GTAC	2 cut(s)	252, 315
CviAII	CATG	1 cut(s)	2
CviQI	GTAC	2 cut(s)	252, 315
DdeI	CTNAG	1 cut(s)	287
DpnI	GATC	1 cut(s)	25
DpnII	GATC	1 cut(s)	23
Eam1104I	CTCTTC	1 cut(s)	317
EarI	CTCTTC	1 cut(s)	317
Eco147I	AGGCCT	1 cut(s)	115
Eco31I	GGTCTC	1 cut(s)	187
Eco57I	CTGAAG	1 cut(s)	240
EcoNI	CCTNNNNNAGG	1 cut(s)	109
EcoRII	CCWGG	1 cut(s)	220
FaiI	YATR	5 cut(s)	3, 21, 122, 228, 246
Fnu4HI	GCNGC	2 cut(s)	100, 261
FokI	GGATG	1 cut(s)	31
Fsp4HI	GCNGC	2 cut(s)	100, 261
FspBI	CTAG	3 cut(s)	90, 156, 264
GlaI	GCGC	1 cut(s)	39
GluI	GCNGC	2 cut(s)	100, 261
HaeIII	GGCC	2 cut(s)	115, 136
HapII	CCGG	2 cut(s)	166, 175
HhaI	GCGC	1 cut(s)	40
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
HincII	GTYRAC	1 cut(s)	204
HindII	GTYRAC	1 cut(s)	204
HinfI	GANTC	3 cut(s)	65, 75, 230
HpaII	CCGG	2 cut(s)	166, 175
HphI	GGTGA	2 cut(s)	17, 161
Hpy166II	GTNNAC	1 cut(s)	204
Hpy188I	TCNGA	2 cut(s)	70, 80
Hpy188III	TCNNGA	3 cut(s)	15, 90, 275
Hpy8I	GTNNAC	1 cut(s)	204
HpyCH4V	TGCA	2 cut(s)	58, 284
HpyF10VI	GCNNNNNNNGC	2 cut(s)	171, 195
HpyF3I	CTNAG	1 cut(s)	287
HspAI	GCGC	1 cut(s)	38
KroI	GCCGGC	1 cut(s)	174
KroNI	GCCGGC	1 cut(s)	176
Kzo9I	GATC	1 cut(s)	23
LmnI	GCTCC	2 cut(s)	146, 291
Lsp1109I	GCAGC	2 cut(s)	111, 247
LweI	GCATC	2 cut(s)	25, 271
MaeI	CTAG	3 cut(s)	90, 156, 264
MalI	GATC	1 cut(s)	25
MboI	GATC	1 cut(s)	23
MnlI	CCTC	5 cut(s)	105, 115, 154, 260, 318
MroNI	GCCGGC	1 cut(s)	174
MspA1I	CMGCKG	1 cut(s)	260
MspI	CCGG	2 cut(s)	166, 175
MspR9I	CCNGG	1 cut(s)	222
MvaI	CCWGG	1 cut(s)	222
MwoI	GCNNNNNNNGC	2 cut(s)	171, 195
NaeI	GCCGGC	1 cut(s)	176
NdeII	GATC	1 cut(s)	23
NgoMIV	GCCGGC	1 cut(s)	174
PceI	AGGCCT	1 cut(s)	115
PdiI	GCCGGC	1 cut(s)	176
PfeI	GAWTC	3 cut(s)	65, 75, 230
PkrI	GCNGC	2 cut(s)	101, 262
Psp6I	CCWGG	1 cut(s)	220
PspGI	CCWGG	1 cut(s)	220
PvuII	CAGCTG	1 cut(s)	260
RsaI	GTAC	2 cut(s)	253, 316
RsaNI	GTAC	2 cut(s)	252, 315
SatI	GCNGC	2 cut(s)	100, 261
Sau3AI	GATC	1 cut(s)	23
ScrFI	CCNGG	1 cut(s)	222
SetI	ASST	7 cut(s)	64, 107, 143, 223, 262, 296, 303
SfaNI	GCATC	2 cut(s)	25, 271
SmlI	CTYRAG	1 cut(s)	184
SmoI	CTYRAG	1 cut(s)	184
SseBI	AGGCCT	1 cut(s)	115
SsiI	CCGC	1 cut(s)	270
SspMI	CTAG	3 cut(s)	90, 156, 264
StuI	AGGCCT	1 cut(s)	115
StyD4I	CCNGG	1 cut(s)	220
TfiI	GAWTC	3 cut(s)	65, 75, 230
TscAI	CASTG	1 cut(s)	196
TseI	GCWGC	2 cut(s)	99, 260
TspDTI	ATGAA	2 cut(s)	75, 243
TspRI	CASTG	1 cut(s)	196
XagI	CCTNNNNNAGG	1 cut(s)	109
XbaI	TCTAGA	1 cut(s)	89
XcmI	CCANNNNNNNNNTGG	1 cut(s)	218
XspI	CTAG	3 cut(s)	90, 156, 264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.