Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8405761.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1207

Gene Structure 1207 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8405761.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 563 bp

atgatcttgggttatgctgctgatttagctgagtttcattcgaaagtagaaataaaggatgccgttattactgttcccccctactttggacaagctgagcggaaggggttagtccgggcggcacagttggctggaatcaatgttctttctttgataaatgagcattctggtgctgcattgcagtatgggattgataaggatttctcaaatgagtcgaggcatgtcattttctatgatatgggcaccagcagtacttatgcagcactagtatatttctcggcttataatgccaaggagtttggaaagactgtgtcggtcaaccaatttcaggtcaaggatatcagatggaacccagaactagggggtcagaatttggaactacggttggttgagcattttgcagatgagttcaataaacaagtgggaaatggggttgatgtgaggaagtctccaaaagcaatggctaaattgaagaaacaggtgaaacgcacaaaagaaattctgagtgcaaacacaatggctccaatatctgttgaatctctttatgatgatcgggacttcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005794 GO:0009507 GO:0009536 GO:0012505 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

HSP70

Protein Analysis

187

Amino Acids

20.88

Weight (kDa)

6.92

Isoelectric Point (pI)

30.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	285
AccB1I	GGYRCC	1 cut(s)	242
AccBSI	CCGCTC	1 cut(s)	100
AciI	CCGC	2 cut(s)	100, 119
AcsI	RAATTY	2 cut(s)	370, 498
AcuI	CTGAAG	1 cut(s)	544
AfaI	GTAC	1 cut(s)	253
AfiI	CCNNNNNNNGG	3 cut(s)	86, 328, 359
AgsI	TTSAA	3 cut(s)	412, 472, 536
AhlI	ACTAGT	1 cut(s)	265
AloI	GAACNNNNNNTCC	2 cut(s)	126, 158
AluBI	AGCT	2 cut(s)	29, 95
AluI	AGCT	2 cut(s)	29, 95
Alw26I	GTCTC	1 cut(s)	453
ApeKI	GCWGC	3 cut(s)	17, 173, 260
ApoI	RAATTY	2 cut(s)	370, 498
AsuC2I	CCSGG	1 cut(s)	116
AsuHPI	GGTGA	1 cut(s)	493
AsuII	TTCGAA	1 cut(s)	41
BaeGI	GKGCMC	1 cut(s)	245
BanI	GGYRCC	1 cut(s)	242
BbvI	GCAGC	3 cut(s)	4, 160, 272
BccI	CCATC	1 cut(s)	339
BceAI	ACGGC	1 cut(s)	47
BcnI	CCSGG	1 cut(s)	116
BcoDI	GTCTC	1 cut(s)	453
BcuI	ACTAGT	1 cut(s)	265
BfaI	CTAG	2 cut(s)	266, 359
BisI	GCNGC	4 cut(s)	18, 120, 174, 261
BlpI	GCTNAGC	1 cut(s)	96
BlsI	GCNGC	4 cut(s)	19, 121, 175, 262
BmcAI	AGTACT	1 cut(s)	253
Bme1390I	CCNGG	1 cut(s)	116
BmiI	GGNNCC	3 cut(s)	244, 350, 522
BmrFI	CCNGG	1 cut(s)	116
BmsI	GCATC	1 cut(s)	49
BplI	GAGNNNNNCTC	2 cut(s)	433, 465
Bpu1102I	GCTNAGC	1 cut(s)	96
Bpu14I	TTCGAA	1 cut(s)	41
BpuMI	CCSGG	1 cut(s)	116
BsaJI	CCNNGG	1 cut(s)	291
BsaXI	ACNNNNNCTCC	2 cut(s)	505, 535
Bsc4I	CCNNNNNNNGG	3 cut(s)	86, 328, 359
Bse3DI	GCAATG	2 cut(s)	176, 465
BseDI	CCNNGG	1 cut(s)	291
BseGI	GGATG	1 cut(s)	64
BseLI	CCNNNNNNNGG	3 cut(s)	86, 328, 359
BseMI	GCAATG	2 cut(s)	176, 465
BseMII	CTCAG	3 cut(s)	21, 87, 494
BseSI	GKGCMC	1 cut(s)	245
BseXI	GCAGC	3 cut(s)	4, 160, 272
BshNI	GGYRCC	1 cut(s)	242
BsiSI	CCGG	1 cut(s)	115
BslI	CCNNNNNNNGG	3 cut(s)	86, 328, 359
BsmAI	GTCTC	1 cut(s)	453
BsmI	GAATGC	1 cut(s)	163
Bsp119I	TTCGAA	1 cut(s)	41
Bsp1286I	GDGCHC	1 cut(s)	245
Bsp143I	GATC	2 cut(s)	3, 550
Bsp1720I	GCTNAGC	1 cut(s)	96
BspACI	CCGC	2 cut(s)	100, 119
BspCNI	CTCAG	3 cut(s)	22, 88, 495
BspLI	GGNNCC	3 cut(s)	244, 350, 522
BspT104I	TTCGAA	1 cut(s)	41
BspT107I	GGYRCC	1 cut(s)	242
BsrBI	CCGCTC	1 cut(s)	100
BsrDI	GCAATG	2 cut(s)	176, 465
BssECI	CCNNGG	1 cut(s)	291
BssMI	GATC	2 cut(s)	3, 550
BssT1I	CCWWGG	1 cut(s)	291
Bst4CI	ACNGT	4 cut(s)	73, 126, 310, 384
BstBI	TTCGAA	1 cut(s)	41
BstDEI	CTNAG	3 cut(s)	30, 96, 503
BstF5I	GGATG	1 cut(s)	64
BstKTI	GATC	2 cut(s)	6, 553
BstMAI	GTCTC	1 cut(s)	453
BstMBI	GATC	2 cut(s)	3, 550
BstMWI	GCNNNNNNNGC	3 cut(s)	26, 128, 287
BstNSI	RCATGY	1 cut(s)	224
BstSCI	CCNGG	1 cut(s)	114
BstSLI	GKGCMC	1 cut(s)	245
BstV1I	GCAGC	3 cut(s)	4, 160, 272
BtsCI	GGATG	1 cut(s)	64
Csp6I	GTAC	1 cut(s)	252
CviAII	CATG	1 cut(s)	221
CviJI	RGCY	6 cut(s)	29, 95, 131, 281, 464, 521
CviKI_1	RGCY	6 cut(s)	29, 95, 131, 281, 464, 521
CviQI	GTAC	1 cut(s)	252
DdeI	CTNAG	3 cut(s)	30, 96, 503
DpnI	GATC	2 cut(s)	5, 552
DpnII	GATC	2 cut(s)	3, 550
Eco130I	CCWWGG	1 cut(s)	291
Eco32I	GATATC	1 cut(s)	340
Eco57I	CTGAAG	1 cut(s)	544
EcoRV	GATATC	1 cut(s)	340
EcoT14I	CCWWGG	1 cut(s)	291
ErhI	CCWWGG	1 cut(s)	291
FaeI	CATG	1 cut(s)	224
FaiI	YATR	9 cut(s)	15, 186, 222, 234, 239, 258, 271, 285, 546
FatI	CATG	1 cut(s)	220
Fnu4HI	GCNGC	4 cut(s)	18, 120, 174, 261
FokI	GGATG	1 cut(s)	71
Fsp4HI	GCNGC	4 cut(s)	18, 120, 174, 261
FspBI	CTAG	2 cut(s)	266, 359
GluI	GCNGC	4 cut(s)	18, 120, 174, 261
HapII	CCGG	1 cut(s)	115
Hin1II	CATG	1 cut(s)	224
HincII	GTYRAC	1 cut(s)	319
HindII	GTYRAC	1 cut(s)	319
HinfI	GANTC	3 cut(s)	135, 212, 536
HpaII	CCGG	1 cut(s)	115
HphI	GGTGA	1 cut(s)	493
Hpy166II	GTNNAC	1 cut(s)	319
Hpy188I	TCNGA	3 cut(s)	344, 369, 504
Hpy188III	TCNNGA	1 cut(s)	554
Hpy8I	GTNNAC	1 cut(s)	319
HpyAV	CCTTC	1 cut(s)	97
HpyCH4III	ACNGT	4 cut(s)	73, 126, 310, 384
HpyCH4V	TGCA	5 cut(s)	176, 181, 260, 401, 509
HpyF10VI	GCNNNNNNNGC	3 cut(s)	26, 128, 287
HpyF3I	CTNAG	3 cut(s)	30, 96, 503
Hsp92II	CATG	1 cut(s)	224
Kzo9I	GATC	2 cut(s)	3, 550
LmnI	GCTCC	1 cut(s)	526
LpnPI	CCDG	7 cut(s)	117, 128, 153, 259, 314, 366, 464
Lsp1109I	GCAGC	3 cut(s)	4, 160, 272
LweI	GCATC	1 cut(s)	49
MaeI	CTAG	2 cut(s)	266, 359
MalI	GATC	2 cut(s)	5, 552
MbiI	CCGCTC	1 cut(s)	100
MboI	GATC	2 cut(s)	3, 550
MboII	GAAGA	1 cut(s)	484
MhlI	GDGCHC	1 cut(s)	245
MluCI	AATT	4 cut(s)	323, 370, 467, 498
MlyI	GAGTC	1 cut(s)	221
MnlI	CCTC	2 cut(s)	210, 435
MslI	CAYNNNNRTG	1 cut(s)	168
MspI	CCGG	1 cut(s)	115
MspR9I	CCNGG	1 cut(s)	116
Mva1269I	GAATGC	1 cut(s)	163
MwoI	GCNNNNNNNGC	3 cut(s)	26, 128, 287
NciI	CCSGG	1 cut(s)	116
NdeII	GATC	2 cut(s)	3, 550
NlaIII	CATG	1 cut(s)	224
NlaIV	GGNNCC	3 cut(s)	244, 350, 522
NmeAIII	GCCGAG	1 cut(s)	257
NspI	RCATGY	1 cut(s)	224
NspV	TTCGAA	1 cut(s)	41
PctI	GAATGC	1 cut(s)	163
PfeI	GAWTC	2 cut(s)	135, 536
PflFI	GACNNNGTC	1 cut(s)	310
PkrI	GCNGC	4 cut(s)	19, 121, 175, 262
PleI	GAGTC	1 cut(s)	220
PpsI	GAGTC	1 cut(s)	220
PsiI	TTATAA	1 cut(s)	285
PspN4I	GGNNCC	3 cut(s)	244, 350, 522
PsyI	GACNNNGTC	1 cut(s)	310
RsaI	GTAC	1 cut(s)	253
RsaNI	GTAC	1 cut(s)	252
RseI	CAYNNNNRTG	1 cut(s)	168
SatI	GCNGC	4 cut(s)	18, 120, 174, 261
Sau3AI	GATC	2 cut(s)	3, 550
ScaI	AGTACT	1 cut(s)	253
SchI	GAGTC	1 cut(s)	221
ScrFI	CCNGG	1 cut(s)	116
SduI	GDGCHC	1 cut(s)	245
SetI	ASST	4 cut(s)	31, 97, 333, 483
SfaNI	GCATC	1 cut(s)	49
SfuI	TTCGAA	1 cut(s)	41
SmiMI	CAYNNNNRTG	1 cut(s)	168
SpeI	ACTAGT	1 cut(s)	265
Sse9I	AATT	4 cut(s)	323, 370, 467, 498
SsiI	CCGC	2 cut(s)	100, 119
SspMI	CTAG	2 cut(s)	266, 359
StyD4I	CCNGG	1 cut(s)	114
StyI	CCWWGG	1 cut(s)	291
TaaI	ACNGT	4 cut(s)	73, 126, 310, 384
TaqI	TCGA	2 cut(s)	41, 215
TaqII	GACCGA	1 cut(s)	304
TasI	AATT	4 cut(s)	323, 370, 467, 498
TatI	WGTACW	1 cut(s)	251
TauI	GCSGC	1 cut(s)	122
TfiI	GAWTC	2 cut(s)	135, 536
TseI	GCWGC	3 cut(s)	17, 173, 260
TspDTI	ATGAA	1 cut(s)	26
Tth111I	GACNNNGTC	1 cut(s)	310
XapI	RAATTY	2 cut(s)	370, 498
XceI	RCATGY	1 cut(s)	224
XspI	CTAG	2 cut(s)	266, 359
ZrmI	AGTACT	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.