Rmu_co8410381.1_g000001

Protein kinase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8410381.1
N/A
Physical Location & Seq
Reverse (-)
181 .. 495
315 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8410381.1_g000001.1.cds

Sequence Viewer

Length: 315 bp
atggcggcgcgcgactcgcaggcgagcatgtaccgactgctgctggaccggtgccggagcttggaggccagccacgtcagactcagagccgagttccgtgagctgcagcaccacaaggagaagaccgaggaggaggaggaggaggaggcgctgacgtcagagttctcggttccgcaccttgtccgggggttcttcctgtccgggagtccgtaccggagcatactggacaacatgggccaggccgtccacgtctgcacggcctccgccggagagatccagtactggtacgtaatcggtgaaactgcgtcgttttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAS PAS_9 Pkinase_Tyr

Protein Analysis

104

Amino Acids

11.94

Weight (kDa)

5.3

Isoelectric Point (pI)

60.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 158
AccB1I GGYRCC 1 cut(s) 51
AccII CGCG 2 cut(s) 10, 12
AciI CCGC 3 cut(s) 5, 173, 264
AclWI GGATC 1 cut(s) 268
AcyI GRCGYC 1 cut(s) 155
AfaI GTAC 4 cut(s) 32, 212, 281, 287
AfiI CCNNNNNNNGG 2 cut(s) 61, 184
AgeI ACCGGT 1 cut(s) 48
AjiI CACGTC 2 cut(s) 76, 250
AjnI CCWGG 1 cut(s) 237
AluBI AGCT 2 cut(s) 60, 103
AluI AGCT 2 cut(s) 60, 103
AlwI GGATC 1 cut(s) 268
AoxI GGCC 4 cut(s) 66, 235, 240, 258
ApeKI GCWGC 3 cut(s) 40, 103, 106
AsiGI ACCGGT 1 cut(s) 48
AspLEI GCGC 3 cut(s) 10, 12, 151
AspS9I GGNCC 2 cut(s) 46, 235
AsuC2I CCSGG 2 cut(s) 185, 202
AsuHPI GGTGA 1 cut(s) 308
AvaII GGWCC 1 cut(s) 46
BanI GGYRCC 1 cut(s) 51
BbsI GAAGAC 1 cut(s) 128
BbvI GCAGC 3 cut(s) 27, 90, 118
BceAI ACGGC 2 cut(s) 227, 273
BciT130I CCWGG 1 cut(s) 239
BcnI CCSGG 2 cut(s) 185, 202
BfmI CTRYAG 1 cut(s) 104
BfoI RGCGCY 1 cut(s) 152
BisI GCNGC 4 cut(s) 6, 41, 104, 107
BlsI GCNGC 4 cut(s) 7, 42, 105, 108
BmcAI AGTACT 1 cut(s) 281
Bme1390I CCNGG 3 cut(s) 185, 202, 239
Bme18I GGWCC 1 cut(s) 46
BmgBI CACGTC 2 cut(s) 76, 250
BmgT120I GGNCC 2 cut(s) 46, 235
BmiI GGNNCC 2 cut(s) 53, 171
BmrFI CCNGG 3 cut(s) 185, 202, 239
BpiI GAAGAC 1 cut(s) 128
BpuMI CCSGG 2 cut(s) 185, 202
BsaAI YACGTR 1 cut(s) 289
BsaHI GRCGYC 1 cut(s) 155
BsaJI CCNNGG 2 cut(s) 126, 184
BsaWI WCCGGW 2 cut(s) 48, 213
Bsc4I CCNNNNNNNGG 2 cut(s) 61, 184
Bse118I RCCGGY 1 cut(s) 48
Bse1I ACTGG 3 cut(s) 228, 277, 287
BseBI CCWGG 1 cut(s) 239
BseDI CCNNGG 2 cut(s) 126, 184
BseLI CCNNNNNNNGG 2 cut(s) 61, 184
BseMII CTCAG 1 cut(s) 97
BseNI ACTGG 3 cut(s) 228, 277, 287
BsePI GCGCGC 1 cut(s) 8
BseRI GAGGAG 6 cut(s) 143, 146, 149, 152, 155, 158
BseXI GCAGC 3 cut(s) 27, 90, 118
BsgI GTGCAG 1 cut(s) 238
Bsh1236I CGCG 2 cut(s) 10, 12
BshFI GGCC 4 cut(s) 68, 237, 242, 260
BshNI GGYRCC 1 cut(s) 51
BshTI ACCGGT 1 cut(s) 48
BsiSI CCGG 6 cut(s) 49, 55, 184, 201, 214, 267
BslI CCNNNNNNNGG 2 cut(s) 61, 184
BsnI GGCC 4 cut(s) 68, 237, 242, 260
Bsp143I GATC 1 cut(s) 273
BspACI CCGC 3 cut(s) 5, 173, 264
BspANI GGCC 4 cut(s) 68, 237, 242, 260
BspCNI CTCAG 1 cut(s) 96
BspFNI CGCG 2 cut(s) 10, 12
BspLI GGNNCC 2 cut(s) 53, 171
BspMAI CTGCAG 1 cut(s) 108
BspPI GGATC 1 cut(s) 268
BspT107I GGYRCC 1 cut(s) 51
BsrFI RCCGGY 1 cut(s) 48
BsrI ACTGG 3 cut(s) 228, 277, 287
BssAI RCCGGY 1 cut(s) 48
BssECI CCNNGG 2 cut(s) 126, 184
BssHII GCGCGC 1 cut(s) 8
BssMI GATC 1 cut(s) 273
BssNI GRCGYC 1 cut(s) 155
Bst2UI CCWGG 1 cut(s) 239
BstACI GRCGYC 1 cut(s) 155
BstBAI YACGTR 1 cut(s) 289
BstC8I GCNNGC 4 cut(s) 10, 21, 25, 70
BstDEI CTNAG 1 cut(s) 83
BstFNI CGCG 2 cut(s) 10, 12
BstH2I RGCGCY 1 cut(s) 152
BstHHI GCGC 3 cut(s) 10, 12, 151
BstKTI GATC 1 cut(s) 276
BstMBI GATC 1 cut(s) 273
BstMWI GCNNNNNNNGC 1 cut(s) 16
BstNI CCWGG 1 cut(s) 239
BstNSI RCATGY 1 cut(s) 31
BstSCI CCNGG 3 cut(s) 183, 200, 237
BstSFI CTRYAG 1 cut(s) 104
BstSNI TACGTA 1 cut(s) 289
BstUI CGCG 2 cut(s) 10, 12
BstV1I GCAGC 3 cut(s) 27, 90, 118
BstV2I GAAGAC 1 cut(s) 128
BstX2I RGATCY 1 cut(s) 273
BstYI RGATCY 1 cut(s) 273
BsuRI GGCC 4 cut(s) 68, 237, 242, 260
BtrI CACGTC 2 cut(s) 76, 250
Cac8I GCNNGC 4 cut(s) 10, 21, 25, 70
CfoI GCGC 3 cut(s) 10, 12, 151
Cfr10I RCCGGY 1 cut(s) 48
Cfr13I GGNCC 2 cut(s) 46, 235
CseI GACGC 1 cut(s) 294
Csp6I GTAC 4 cut(s) 31, 211, 280, 286
CspAI ACCGGT 1 cut(s) 48
CviAII CATG 2 cut(s) 28, 232
CviJI RGCY 8 cut(s) 60, 68, 72, 89, 103, 237, 242, 260
CviKI_1 RGCY 8 cut(s) 60, 68, 72, 89, 103, 237, 242, 260
CviQI GTAC 4 cut(s) 31, 211, 280, 286
DdeI CTNAG 1 cut(s) 83
DpnI GATC 1 cut(s) 275
DpnII GATC 1 cut(s) 273
EciI GGCGGA 1 cut(s) 253
Eco105I TACGTA 1 cut(s) 289
Eco47I GGWCC 1 cut(s) 46
EcoRII CCWGG 1 cut(s) 237
FaeI CATG 2 cut(s) 31, 235
FaiI YATR 3 cut(s) 29, 221, 233
FatI CATG 2 cut(s) 27, 231
Fnu4HI GCNGC 4 cut(s) 6, 41, 104, 107
Fsp4HI GCNGC 4 cut(s) 6, 41, 104, 107
GlaI GCGC 3 cut(s) 9, 11, 150
GluI GCNGC 4 cut(s) 6, 41, 104, 107
HaeII RGCGCY 1 cut(s) 152
HaeIII GGCC 4 cut(s) 68, 237, 242, 260
HapII CCGG 6 cut(s) 49, 55, 184, 201, 214, 267
HgaI GACGC 1 cut(s) 294
HhaI GCGC 3 cut(s) 10, 12, 151
Hin1I GRCGYC 1 cut(s) 155
Hin1II CATG 2 cut(s) 31, 235
Hin6I GCGC 3 cut(s) 8, 10, 149
HinP1I GCGC 3 cut(s) 8, 10, 149
HinfI GANTC 3 cut(s) 14, 81, 205
HpaII CCGG 6 cut(s) 49, 55, 184, 201, 214, 267
HphI GGTGA 1 cut(s) 308
Hpy166II GTNNAC 1 cut(s) 247
Hpy188I TCNGA 3 cut(s) 80, 86, 160
Hpy8I GTNNAC 1 cut(s) 247
Hpy99I CGWCG 1 cut(s) 310
HpyCH4IV ACGT 4 cut(s) 75, 155, 249, 288
HpyCH4V TGCA 2 cut(s) 106, 255
HpyF10VI GCNNNNNNNGC 1 cut(s) 16
HpyF3I CTNAG 1 cut(s) 83
HpySE526I ACGT 4 cut(s) 75, 155, 249, 288
Hsp92I GRCGYC 1 cut(s) 155
Hsp92II CATG 2 cut(s) 31, 235
HspAI GCGC 3 cut(s) 8, 10, 149
Kzo9I GATC 1 cut(s) 273
LmnI GCTCC 2 cut(s) 57, 216
Lsp1109I GCAGC 3 cut(s) 27, 90, 118
MaeII ACGT 4 cut(s) 75, 155, 249, 288
MalI GATC 1 cut(s) 275
MboI GATC 1 cut(s) 273
MboII GAAGA 2 cut(s) 133, 184
MflI RGATCY 1 cut(s) 273
MlyI GAGTC 3 cut(s) 8, 75, 214
MnlI CCTC 9 cut(s) 58, 121, 124, 127, 130, 133, 136, 139, 271
MseI TTAA 1 cut(s) 313
MspI CCGG 6 cut(s) 49, 55, 184, 201, 214, 267
MspR9I CCNGG 3 cut(s) 185, 202, 239
MvaI CCWGG 1 cut(s) 239
MvnI CGCG 2 cut(s) 10, 12
MwoI GCNNNNNNNGC 1 cut(s) 16
NciI CCSGG 2 cut(s) 185, 202
NdeII GATC 1 cut(s) 273
NlaIII CATG 2 cut(s) 31, 235
NlaIV GGNNCC 2 cut(s) 53, 171
NmeAIII GCCGAG 1 cut(s) 115
NspI RCATGY 1 cut(s) 31
PauI GCGCGC 1 cut(s) 8
PfoI TCCNGGA 1 cut(s) 200
PinAI ACCGGT 1 cut(s) 48
PkrI GCNGC 4 cut(s) 7, 42, 105, 108
PleI GAGTC 3 cut(s) 8, 75, 213
PpsI GAGTC 3 cut(s) 8, 75, 213
Ppu21I YACGTR 1 cut(s) 289
Psp6I CCWGG 1 cut(s) 237
PspGI CCWGG 1 cut(s) 237
PspN4I GGNNCC 2 cut(s) 53, 171
PspPI GGNCC 2 cut(s) 46, 235
PstI CTGCAG 1 cut(s) 108
PsuI RGATCY 1 cut(s) 273
PteI GCGCGC 1 cut(s) 8
RsaI GTAC 4 cut(s) 32, 212, 281, 287
RsaNI GTAC 4 cut(s) 31, 211, 280, 286
SaqAI TTAA 1 cut(s) 313
SatI GCNGC 4 cut(s) 6, 41, 104, 107
Sau3AI GATC 1 cut(s) 273
Sau96I GGNCC 2 cut(s) 46, 235
ScaI AGTACT 1 cut(s) 281
SchI GAGTC 3 cut(s) 8, 75, 214
ScrFI CCNGG 3 cut(s) 185, 202, 239
SetI ASST 7 cut(s) 62, 78, 105, 158, 180, 252, 291
SfcI CTRYAG 1 cut(s) 104
SinI GGWCC 1 cut(s) 46
SnaBI TACGTA 1 cut(s) 289
SsiI CCGC 3 cut(s) 5, 173, 264
StyD4I CCNGG 3 cut(s) 183, 200, 237
TaiI ACGT 4 cut(s) 78, 158, 252, 291
TaqII GACCGA 1 cut(s) 140
TatI WGTACW 1 cut(s) 279
TauI GCSGC 1 cut(s) 8
Tru1I TTAA 1 cut(s) 313
Tru9I TTAA 1 cut(s) 313
TseI GCWGC 3 cut(s) 40, 103, 106
TspGWI ACGGA 2 cut(s) 86, 198
VpaK11BI GGWCC 1 cut(s) 46
XceI RCATGY 1 cut(s) 31
ZraI GACGTC 1 cut(s) 156
ZrmI AGTACT 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.