Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8410781.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

484 .. 1272

Gene Structure 789 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8410781.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

atggccaactatctctgctatgacgtctacgacctcgagctaaccaaggtttccgacaattccgaactgcgtgccttactcatacaaacgacgaaccgctccatcgttgtgatagaagacatcgactgctcggttgatctgacggcggacagactctccaagagaagtagaaagagatcatcatcatcatcgcccatgcccaccaaggtcgacgaggacgacgggcggcgtgtgacgctgtcggggcttctcaacttcaccgacgggctctggtcatgttgtggagaagagaggatcatagtattcaccaccaaccacagagaaaacgtggaccgggcgctactccgctgcgggcgcatggacatgcacgttagcctcggagcgtgcggggctcacgcttttagggccttagtaaagaactatctggggctggactcccacccgcttttcgaggcggtggacagttgtgtgaggtcgggcggggctctgacgccggcacaggtcggggagattttgctccgtaaccgtggtgatgcaaacttggcactgaagggggtggtgtcggccatgcagggaaggattttgggtggcggggtccgagacttgaccatagactccgaggcggagacacaaacactcttgttgcgttctccagaaagcgtgctagtgggtggtgggtctccggataattgggtgtcctcgtcgtcgccggggaggaagaaaagggtcaagttcttagtgaggctgaggtctttaaccaagtcggactccgtaagaaggggggtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017004 GO:0017062 GO:0017111 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033108 GO:0034551 GO:0034622 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc Pkinase

Protein Analysis

262

Amino Acids

28.63

Weight (kDa)

8.7

Isoelectric Point (pI)

58.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	27
AccBSI	CCGCTC	1 cut(s)	99
AccI	GTMKAC	2 cut(s)	27, 210
AccIII	TCCGGA	1 cut(s)	682
AclWI	GGATC	1 cut(s)	302
AcoI	YGGCCR	2 cut(s)	3, 564
AcuI	CTGAAG	1 cut(s)	569
AcyI	GRCGYC	2 cut(s)	24, 491
AfiI	CCNNNNNNNGG	1 cut(s)	777
AluBI	AGCT	1 cut(s)	40
AluI	AGCT	1 cut(s)	40
Alw26I	GTCTC	3 cut(s)	594, 620, 684
AlwI	GGATC	1 cut(s)	302
Ama87I	CYCGRG	1 cut(s)	35
Aor13HI	TCCGGA	1 cut(s)	682
AoxI	GGCC	3 cut(s)	3, 405, 564
ApeKI	GCWGC	1 cut(s)	348
AspLEI	GCGC	2 cut(s)	340, 357
AspS9I	GGNCC	3 cut(s)	331, 405, 595
AsuC2I	CCSGG	2 cut(s)	335, 711
AsuHPI	GGTGA	3 cut(s)	250, 298, 542
AvaI	CYCGRG	1 cut(s)	35
AvaII	GGWCC	2 cut(s)	331, 595
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	3 cut(s)	270, 394, 487
BbsI	GAAGAC	1 cut(s)	123
BbvCI	CCTCAGC	1 cut(s)	746
BbvI	GCAGC	1 cut(s)	335
BccI	CCATC	1 cut(s)	110
BceAI	ACGGC	1 cut(s)	159
BcgI	CGANNNNNNTGC	2 cut(s)	53, 87
BcnI	CCSGG	2 cut(s)	335, 711
BcoDI	GTCTC	3 cut(s)	594, 620, 684
BfaI	CTAG	1 cut(s)	665
BfoI	RGCGCY	1 cut(s)	341
BisI	GCNGC	2 cut(s)	227, 349
BlsI	GCNGC	2 cut(s)	228, 350
Bme1390I	CCNGG	2 cut(s)	335, 711
Bme18I	GGWCC	2 cut(s)	331, 595
BmeT110I	CYCGRG	1 cut(s)	35
BmgT120I	GGNCC	3 cut(s)	331, 405, 595
BmiI	GGNNCC	1 cut(s)	596
BmrFI	CCNGG	2 cut(s)	335, 711
BmsI	GCATC	1 cut(s)	523
BpiI	GAAGAC	1 cut(s)	123
BpmI	CTGGAG	1 cut(s)	636
Bpu10I	CCTNAGC	1 cut(s)	746
BpuMI	CCSGG	2 cut(s)	335, 711
BsaBI	GATNNNNATC	1 cut(s)	181
BsaHI	GRCGYC	2 cut(s)	24, 491
BsaI	GGTCTC	1 cut(s)	684
BsaJI	CCNNGG	6 cut(s)	45, 204, 376, 526, 618, 710
BsaWI	WCCGGW	1 cut(s)	682
BsaXI	ACNNNNNCTCC	2 cut(s)	140, 170
Bsc4I	CCNNNNNNNGG	1 cut(s)	777
Bse118I	RCCGGY	1 cut(s)	493
Bse8I	GATNNNNATC	1 cut(s)	181
BseAI	TCCGGA	1 cut(s)	682
BseDI	CCNNGG	6 cut(s)	45, 204, 376, 526, 618, 710
BseJI	GATNNNNATC	1 cut(s)	181
BseLI	CCNNNNNNNGG	1 cut(s)	777
BseMII	CTCAG	1 cut(s)	737
BseXI	GCAGC	1 cut(s)	335
BshFI	GGCC	3 cut(s)	5, 407, 566
BsiHKCI	CYCGRG	1 cut(s)	35
BsiSI	CCGG	4 cut(s)	334, 494, 683, 710
BslI	CCNNNNNNNGG	1 cut(s)	777
BsmAI	GTCTC	3 cut(s)	594, 620, 684
BsnI	GGCC	3 cut(s)	5, 407, 566
Bso31I	GGTCTC	1 cut(s)	684
BsoBI	CYCGRG	1 cut(s)	35
Bsp1286I	GDGCHC	3 cut(s)	270, 394, 487
Bsp13I	TCCGGA	1 cut(s)	682
Bsp143I	GATC	3 cut(s)	136, 176, 294
BspANI	GGCC	3 cut(s)	5, 407, 566
BspCNI	CTCAG	1 cut(s)	738
BspEI	TCCGGA	1 cut(s)	682
BspLI	GGNNCC	1 cut(s)	596
BspPI	GGATC	1 cut(s)	302
BspTNI	GGTCTC	1 cut(s)	684
BsrBI	CCGCTC	1 cut(s)	99
BsrFI	RCCGGY	1 cut(s)	493
BssAI	RCCGGY	1 cut(s)	493
BssECI	CCNNGG	6 cut(s)	45, 204, 376, 526, 618, 710
BssMI	GATC	3 cut(s)	136, 176, 294
BssNI	GRCGYC	2 cut(s)	24, 491
BssT1I	CCWWGG	2 cut(s)	45, 204
Bst4CI	ACNGT	2 cut(s)	464, 527
Bst6I	CTCTTC	1 cut(s)	282
BstACI	GRCGYC	2 cut(s)	24, 491
BstC8I	GCNNGC	5 cut(s)	72, 353, 385, 495, 662
BstDEI	CTNAG	3 cut(s)	409, 736, 746
BstDSI	CCRYGG	1 cut(s)	526
BstH2I	RGCGCY	1 cut(s)	341
BstHHI	GCGC	2 cut(s)	340, 357
BstKTI	GATC	3 cut(s)	139, 179, 297
BstMAI	GTCTC	3 cut(s)	594, 620, 684
BstMBI	GATC	3 cut(s)	136, 176, 294
BstMWI	GCNNNNNNNGC	6 cut(s)	235, 244, 354, 389, 404, 542
BstNSI	RCATGY	1 cut(s)	367
BstSCI	CCNGG	2 cut(s)	333, 709
BstV1I	GCAGC	1 cut(s)	335
BstV2I	GAAGAC	1 cut(s)	123
BsuRI	GGCC	3 cut(s)	5, 407, 566
BtgI	CCRYGG	1 cut(s)	526
BtgZI	GCGATG	1 cut(s)	174
BtsIMutI	CAGTG	1 cut(s)	545
Cac8I	GCNNGC	5 cut(s)	72, 353, 385, 495, 662
CfoI	GCGC	2 cut(s)	340, 357
Cfr10I	RCCGGY	1 cut(s)	493
Cfr13I	GGNCC	3 cut(s)	331, 405, 595
CseI	GACGC	2 cut(s)	244, 499
CviAII	CATG	5 cut(s)	196, 276, 358, 364, 568
DdeI	CTNAG	3 cut(s)	409, 736, 746
DpnI	GATC	3 cut(s)	138, 178, 296
DpnII	GATC	3 cut(s)	136, 176, 294
EaeI	YGGCCR	2 cut(s)	3, 564
Eam1104I	CTCTTC	1 cut(s)	282
EarI	CTCTTC	1 cut(s)	282
EciI	GGCGGA	2 cut(s)	161, 638
Eco130I	CCWWGG	2 cut(s)	45, 204
Eco24I	GRGCYC	3 cut(s)	270, 394, 487
Eco31I	GGTCTC	1 cut(s)	684
Eco47I	GGWCC	2 cut(s)	331, 595
Eco57I	CTGAAG	1 cut(s)	569
Eco88I	CYCGRG	1 cut(s)	35
EcoO109I	RGGNCCY	1 cut(s)	405
EcoT14I	CCWWGG	2 cut(s)	45, 204
EcoT38I	GRGCYC	3 cut(s)	270, 394, 487
ErhI	CCWWGG	2 cut(s)	45, 204
FaeI	CATG	5 cut(s)	199, 279, 361, 367, 571
FatI	CATG	5 cut(s)	195, 275, 357, 363, 567
FauI	CCCGC	5 cut(s)	344, 380, 450, 473, 584
FblI	GTMKAC	2 cut(s)	27, 210
Fnu4HI	GCNGC	2 cut(s)	227, 349
FriOI	GRGCYC	3 cut(s)	270, 394, 487
Fsp4HI	GCNGC	2 cut(s)	227, 349
FspBI	CTAG	1 cut(s)	665
GlaI	GCGC	2 cut(s)	339, 356
GluI	GCNGC	2 cut(s)	227, 349
GsuI	CTGGAG	1 cut(s)	636
HaeII	RGCGCY	1 cut(s)	341
HaeIII	GGCC	3 cut(s)	5, 407, 566
HapII	CCGG	4 cut(s)	334, 494, 683, 710
HgaI	GACGC	2 cut(s)	244, 499
HhaI	GCGC	2 cut(s)	340, 357
Hin1I	GRCGYC	2 cut(s)	24, 491
Hin1II	CATG	5 cut(s)	199, 279, 361, 367, 571
Hin6I	GCGC	2 cut(s)	338, 355
HinP1I	GCGC	2 cut(s)	338, 355
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HinfI	GANTC	4 cut(s)	153, 434, 614, 767
HpaII	CCGG	4 cut(s)	334, 494, 683, 710
HphI	GGTGA	3 cut(s)	250, 298, 542
Hpy166II	GTNNAC	4 cut(s)	28, 211, 331, 460
Hpy188I	TCNGA	8 cut(s)	55, 64, 141, 380, 489, 599, 619, 766
Hpy188III	TCNNGA	2 cut(s)	653, 683
Hpy8I	GTNNAC	4 cut(s)	28, 211, 331, 460
Hpy99I	CGWCG	6 cut(s)	94, 215, 224, 266, 706, 709
HpyAV	CCTTC	3 cut(s)	544, 570, 771
HpyCH4III	ACNGT	2 cut(s)	464, 527
HpyCH4IV	ACGT	3 cut(s)	24, 327, 369
HpyCH4V	TGCA	3 cut(s)	367, 536, 571
HpyF10VI	GCNNNNNNNGC	6 cut(s)	235, 244, 354, 389, 404, 542
HpyF3I	CTNAG	3 cut(s)	409, 736, 746
HpySE526I	ACGT	3 cut(s)	24, 327, 369
Hsp92I	GRCGYC	2 cut(s)	24, 491
Hsp92II	CATG	5 cut(s)	199, 279, 361, 367, 571
HspAI	GCGC	2 cut(s)	338, 355
Kpn2I	TCCGGA	1 cut(s)	682
KroI	GCCGGC	1 cut(s)	493
KroNI	GCCGGC	1 cut(s)	495
Kzo9I	GATC	3 cut(s)	136, 176, 294
LmnI	GCTCC	3 cut(s)	104, 380, 522
Lsp1109I	GCAGC	1 cut(s)	335
LweI	GCATC	1 cut(s)	523
MaeI	CTAG	1 cut(s)	665
MaeII	ACGT	3 cut(s)	24, 327, 369
MaeIII	GTNAC	2 cut(s)	232, 521
MalI	GATC	3 cut(s)	138, 178, 296
MbiI	CCGCTC	1 cut(s)	99
MboI	GATC	3 cut(s)	136, 176, 294
MboII	GAAGA	3 cut(s)	128, 299, 730
MhlI	GDGCHC	3 cut(s)	270, 394, 487
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	58, 688
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	4 cut(s)	147, 428, 608, 761
MmeI	TCCRAC	2 cut(s)	78, 744
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	682
MroNI	GCCGGC	1 cut(s)	493
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	755
MslI	CAYNNNNRTG	2 cut(s)	107, 362
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	348
MspI	CCGG	4 cut(s)	334, 494, 683, 710
MspR9I	CCNGG	2 cut(s)	335, 711
MwoI	GCNNNNNNNGC	6 cut(s)	235, 244, 354, 389, 404, 542
NaeI	GCCGGC	1 cut(s)	495
NciI	CCSGG	2 cut(s)	335, 711
NdeII	GATC	3 cut(s)	136, 176, 294
NgoMIV	GCCGGC	1 cut(s)	493
NlaIII	CATG	5 cut(s)	199, 279, 361, 367, 571
NlaIV	GGNNCC	1 cut(s)	596
NmuCI	GTSAC	1 cut(s)	232
NspI	RCATGY	1 cut(s)	367
PaeR7I	CTCGAG	1 cut(s)	35
PcsI	WCGNNNNNNNCGW	1 cut(s)	216
PdiI	GCCGGC	1 cut(s)	495
PflFI	GACNNNGTC	1 cut(s)	238
PkrI	GCNGC	2 cut(s)	228, 350
PleI	GAGTC	4 cut(s)	147, 428, 608, 761
PpsI	GAGTC	4 cut(s)	147, 428, 608, 761
PspN4I	GGNNCC	1 cut(s)	596
PspPI	GGNCC	3 cut(s)	331, 405, 595
PspXI	VCTCGAGB	1 cut(s)	35
PsyI	GACNNNGTC	1 cut(s)	238
RseI	CAYNNNNRTG	2 cut(s)	107, 362
SalI	GTCGAC	1 cut(s)	209
SaqAI	TTAA	1 cut(s)	755
SatI	GCNGC	2 cut(s)	227, 349
Sau3AI	GATC	3 cut(s)	136, 176, 294
Sau96I	GGNCC	3 cut(s)	331, 405, 595
SchI	GAGTC	4 cut(s)	147, 428, 608, 761
ScrFI	CCNGG	2 cut(s)	335, 711
SduI	GDGCHC	3 cut(s)	270, 394, 487
SfaNI	GCATC	1 cut(s)	523
Sfr274I	CTCGAG	1 cut(s)	35
SinI	GGWCC	2 cut(s)	331, 595
SlaI	CTCGAG	1 cut(s)	35
SmiMI	CAYNNNNRTG	2 cut(s)	107, 362
SmlI	CTYRAG	1 cut(s)	35
SmoI	CTYRAG	1 cut(s)	35
Sse9I	AATT	2 cut(s)	58, 688
SspMI	CTAG	1 cut(s)	665
StyD4I	CCNGG	2 cut(s)	333, 709
StyI	CCWWGG	2 cut(s)	45, 204
TaaI	ACNGT	2 cut(s)	464, 527
TaiI	ACGT	3 cut(s)	27, 330, 372
TaqI	TCGA	4 cut(s)	36, 123, 210, 450
TasI	AATT	2 cut(s)	58, 688
TauI	GCSGC	1 cut(s)	229
Tru1I	TTAA	1 cut(s)	755
Tru9I	TTAA	1 cut(s)	755
TscAI	CASTG	1 cut(s)	552
TseFI	GTSAC	1 cut(s)	232
TseI	GCWGC	1 cut(s)	348
Tsp45I	GTSAC	1 cut(s)	232
TspGWI	ACGGA	2 cut(s)	509, 760
TspRI	CASTG	1 cut(s)	552
Tth111I	GACNNNGTC	1 cut(s)	238
VpaK11BI	GGWCC	2 cut(s)	331, 595
XceI	RCATGY	1 cut(s)	367
XhoI	CTCGAG	1 cut(s)	35
XmiI	GTMKAC	2 cut(s)	27, 210
XspI	CTAG	1 cut(s)	665
ZraI	GACGTC	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.