Rmu_co8417909.1_g000001

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8417909.1
N/A
Physical Location & Seq
Forward (+)
94 .. 906
813 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8417909.1_g000001.1.cds

Sequence Viewer

Length: 813 bp
atgaatgaatcaattccgaatgaaataggatcactgaggtcactcaaagagctgcgtttgggtgaaaacagcctgacaggtccaatccctgcctccatatggagcttgggcaacttgatcttcctatatctggggagtaatcaactttctggaaccgtccctcaagaagtagggaaccttaaatcccttaatcagctccacttgcaattcaacaacctaaatggtccaattccggcatccataggaaacctggccaatttgactatttttgcacttctgagtaatacattttatggatccatcccttcatctttaggaaacttgaccaaactcacctggttagatatccagcaaaatcaattgagtggcctcatcccaccagaattaggcaagctcacattgctattcaagttagggctatttttaaacaatctcaatggctctattcctggagagctaaacaaccttacaaacttgcaaaatttaggggtatctagcaacatgttttcaggctatcttcctcaggaaatttgcaatggtggagtacttctaaatttttcagcaaatgacaagtacttcattggctccatcccgaaaagtttcaggaactgttccagcttatacagagtgaggcttgatagaaacaggttaacaggaactatatccgaagatcttggagtttatccacacttgaactatattgatttgagctataacaatttctatggggaaatttctcataagtgggtgcagtgccagagtctgcaaagcttgaaaatctctcacagtagttgcataggtgaagcacagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase

Protein Analysis

270

Amino Acids

29.63

Weight (kDa)

6.89

Isoelectric Point (pI)

26.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 37, 291, 304
AcoI YGGCCR 1 cut(s) 252
AcsI RAATTY 4 cut(s) 481, 528, 553, 732
AfaI GTAC 2 cut(s) 546, 575
AfiI CCNNNNNNNGG 3 cut(s) 99, 130, 386
AflIII ACRYGT 1 cut(s) 501
AgsI TTSAA 4 cut(s) 211, 409, 694, 775
AjnI CCWGG 3 cut(s) 249, 335, 448
AloI GAACNNNNNNTCC 2 cut(s) 167, 199
AluBI AGCT 8 cut(s) 52, 105, 196, 394, 457, 618, 711, 771
AluI AGCT 8 cut(s) 52, 105, 196, 394, 457, 618, 711, 771
AlwI GGATC 3 cut(s) 37, 291, 304
AlwNI CAGNNNCTG 2 cut(s) 609, 763
AoxI GGCC 2 cut(s) 252, 367
ApeKI GCWGC 1 cut(s) 52
ApoI RAATTY 4 cut(s) 481, 528, 553, 732
Asp700I GAANNNNTTC 2 cut(s) 12, 599
AspS9I GGNCC 2 cut(s) 80, 224
AsuHPI GGTGA 3 cut(s) 74, 325, 812
AvaII GGWCC 2 cut(s) 80, 224
AxyI CCTNAGG 1 cut(s) 522
BalI TGGCCA 1 cut(s) 254
BamHI GGATCC 1 cut(s) 296
BbvI GCAGC 1 cut(s) 39
BccI CCATC 2 cut(s) 308, 596
BciT130I CCWGG 3 cut(s) 251, 337, 450
BfaI CTAG 1 cut(s) 495
BglII AGATCT 1 cut(s) 670
BisI GCNGC 1 cut(s) 53
BlsI GCNGC 1 cut(s) 54
BmcAI AGTACT 2 cut(s) 546, 575
Bme1390I CCNGG 3 cut(s) 251, 337, 450
Bme18I GGWCC 2 cut(s) 80, 224
BmgT120I GGNCC 2 cut(s) 80, 224
BmiI GGNNCC 4 cut(s) 154, 176, 298, 586
BmrFI CCNGG 3 cut(s) 251, 337, 450
BmsI GCATC 1 cut(s) 245
BpmI CTGGAG 1 cut(s) 471
BpuEI CTTGAG 1 cut(s) 147
Bsc4I CCNNNNNNNGG 3 cut(s) 99, 130, 386
Bse21I CCTNAGG 1 cut(s) 522
Bse3DI GCAATG 2 cut(s) 398, 541
BseBI CCWGG 3 cut(s) 251, 337, 450
BseGI GGATG 4 cut(s) 236, 300, 372, 588
BseLI CCNNNNNNNGG 3 cut(s) 99, 130, 386
BseMI GCAATG 2 cut(s) 398, 541
BseMII CTCAG 3 cut(s) 26, 269, 536
BseXI GCAGC 1 cut(s) 39
BsgI GTGCAG 1 cut(s) 770
BshFI GGCC 2 cut(s) 254, 369
BsiSI CCGG 1 cut(s) 233
BslFI GGGAC 1 cut(s) 143
BslI CCNNNNNNNGG 3 cut(s) 99, 130, 386
BsmFI GGGAC 1 cut(s) 143
BsnI GGCC 2 cut(s) 254, 369
Bsp143I GATC 4 cut(s) 29, 117, 296, 670
BspANI GGCC 2 cut(s) 254, 369
BspCNI CTCAG 3 cut(s) 27, 270, 535
BspLI GGNNCC 4 cut(s) 154, 176, 298, 586
BspPI GGATC 3 cut(s) 37, 291, 304
BsrDI GCAATG 2 cut(s) 398, 541
BssMI GATC 4 cut(s) 29, 117, 296, 670
Bst2UI CCWGG 3 cut(s) 251, 337, 450
Bst4CI ACNGT 4 cut(s) 157, 611, 788, 810
BstC8I GCNNGC 1 cut(s) 392
BstDEI CTNAG 3 cut(s) 35, 278, 522
BstF5I GGATG 4 cut(s) 236, 300, 372, 588
BstKTI GATC 4 cut(s) 32, 120, 299, 673
BstMBI GATC 4 cut(s) 29, 117, 296, 670
BstMWI GCNNNNNNNGC 2 cut(s) 202, 400
BstNI CCWGG 3 cut(s) 251, 337, 450
BstNSI RCATGY 1 cut(s) 505
BstSCI CCNGG 3 cut(s) 249, 335, 448
BstV1I GCAGC 1 cut(s) 39
BstX2I RGATCY 2 cut(s) 296, 670
BstYI RGATCY 2 cut(s) 296, 670
Bsu36I CCTNAGG 1 cut(s) 522
BsuRI GGCC 2 cut(s) 254, 369
BtsCI GGATG 4 cut(s) 236, 300, 372, 588
BtsI GCAGTG 1 cut(s) 758
BtsIMutI CAGTG 2 cut(s) 32, 758
Cac8I GCNNGC 1 cut(s) 392
CaiI CAGNNNCTG 2 cut(s) 609, 763
Cfr13I GGNCC 2 cut(s) 80, 224
CsiI ACCWGGT 1 cut(s) 335
Csp6I GTAC 2 cut(s) 545, 574
CviAII CATG 1 cut(s) 502
CviQI GTAC 2 cut(s) 545, 574
DdeI CTNAG 3 cut(s) 35, 278, 522
DpnI GATC 4 cut(s) 31, 119, 298, 672
DpnII GATC 4 cut(s) 29, 117, 296, 670
DraI TTTAAA 1 cut(s) 426
EaeI YGGCCR 1 cut(s) 252
Eco32I GATATC 1 cut(s) 346
Eco47I GGWCC 2 cut(s) 80, 224
Eco81I CCTNAGG 1 cut(s) 522
EcoRII CCWGG 3 cut(s) 249, 335, 448
EcoRV GATATC 1 cut(s) 346
FaeI CATG 1 cut(s) 505
FaqI GGGAC 1 cut(s) 143
FatI CATG 1 cut(s) 501
FauNDI CATATG 1 cut(s) 98
Fnu4HI GCNGC 1 cut(s) 53
FokI GGATG 4 cut(s) 223, 287, 359, 575
Fsp4HI GCNGC 1 cut(s) 53
FspBI CTAG 1 cut(s) 495
GluI GCNGC 1 cut(s) 53
GsuI CTGGAG 1 cut(s) 471
HaeIII GGCC 2 cut(s) 254, 369
HapII CCGG 1 cut(s) 233
Hin1II CATG 1 cut(s) 505
HincII GTYRAC 1 cut(s) 651
HindII GTYRAC 1 cut(s) 651
HindIII AAGCTT 1 cut(s) 769
HinfI GANTC 2 cut(s) 8, 760
HpaI GTTAAC 1 cut(s) 651
HpaII CCGG 1 cut(s) 233
HphI GGTGA 3 cut(s) 74, 325, 812
Hpy166II GTNNAC 1 cut(s) 651
Hpy188I TCNGA 3 cut(s) 18, 279, 667
Hpy188III TCNNGA 5 cut(s) 150, 164, 524, 592, 604
Hpy8I GTNNAC 1 cut(s) 651
HpyAV CCTTC 1 cut(s) 315
HpyCH4III ACNGT 4 cut(s) 157, 611, 788, 810
HpyCH4V TGCA 7 cut(s) 205, 272, 478, 534, 751, 766, 795
HpyF10VI GCNNNNNNNGC 2 cut(s) 202, 400
HpyF3I CTNAG 3 cut(s) 35, 278, 522
Hsp92II CATG 1 cut(s) 505
KspAI GTTAAC 1 cut(s) 651
Kzo9I GATC 4 cut(s) 29, 117, 296, 670
LmnI GCTCC 3 cut(s) 102, 201, 590
Lsp1109I GCAGC 1 cut(s) 39
LweI GCATC 1 cut(s) 245
MabI ACCWGGT 1 cut(s) 335
MaeI CTAG 1 cut(s) 495
MaeIII GTNAC 1 cut(s) 39
MalI GATC 4 cut(s) 31, 119, 298, 672
MboI GATC 4 cut(s) 29, 117, 296, 670
MboII GAAGA 3 cut(s) 112, 509, 680
MfeI CAATTG 1 cut(s) 359
MflI RGATCY 2 cut(s) 296, 670
MlsI TGGCCA 1 cut(s) 254
MluNI TGGCCA 1 cut(s) 254
MlyI GAGTC 1 cut(s) 769
MnlI CCTC 6 cut(s) 30, 103, 171, 380, 531, 624
Mox20I TGGCCA 1 cut(s) 254
MroXI GAANNNNTTC 2 cut(s) 12, 599
MscI TGGCCA 1 cut(s) 254
MseI TTAA 4 cut(s) 180, 189, 425, 650
Msp20I TGGCCA 1 cut(s) 254
MspI CCGG 1 cut(s) 233
MspR9I CCNGG 3 cut(s) 251, 337, 450
MunI CAATTG 1 cut(s) 359
MvaI CCWGG 3 cut(s) 251, 337, 450
MwoI GCNNNNNNNGC 2 cut(s) 202, 400
NdeI CATATG 1 cut(s) 98
NdeII GATC 4 cut(s) 29, 117, 296, 670
NlaIII CATG 1 cut(s) 505
NlaIV GGNNCC 4 cut(s) 154, 176, 298, 586
NmuCI GTSAC 1 cut(s) 39
NspI RCATGY 1 cut(s) 505
PciI ACATGT 1 cut(s) 501
PdmI GAANNNNTTC 2 cut(s) 12, 599
PfeI GAWTC 1 cut(s) 8
PfoI TCCNGGA 1 cut(s) 448
PkrI GCNGC 1 cut(s) 54
PleI GAGTC 1 cut(s) 768
PpsI GAGTC 1 cut(s) 768
PscI ACATGT 1 cut(s) 501
Psp6I CCWGG 3 cut(s) 249, 335, 448
PspGI CCWGG 3 cut(s) 249, 335, 448
PspN4I GGNNCC 4 cut(s) 154, 176, 298, 586
PspPI GGNCC 2 cut(s) 80, 224
PstNI CAGNNNCTG 2 cut(s) 609, 763
PsuI RGATCY 2 cut(s) 296, 670
RsaI GTAC 2 cut(s) 546, 575
RsaNI GTAC 2 cut(s) 545, 574
SaqAI TTAA 4 cut(s) 180, 189, 425, 650
SatI GCNGC 1 cut(s) 53
Sau3AI GATC 4 cut(s) 29, 117, 296, 670
Sau96I GGNCC 2 cut(s) 80, 224
ScaI AGTACT 2 cut(s) 546, 575
SchI GAGTC 1 cut(s) 769
ScrFI CCNGG 3 cut(s) 251, 337, 450
SexAI ACCWGGT 1 cut(s) 335
SfaNI GCATC 1 cut(s) 245
SinI GGWCC 2 cut(s) 80, 224
SmlI CTYRAG 1 cut(s) 162
SmoI CTYRAG 1 cut(s) 162
SspMI CTAG 1 cut(s) 495
StyD4I CCNGG 3 cut(s) 249, 335, 448
TaaI ACNGT 4 cut(s) 157, 611, 788, 810
TatI WGTACW 2 cut(s) 544, 573
TfiI GAWTC 1 cut(s) 8
Tru1I TTAA 4 cut(s) 180, 189, 425, 650
Tru9I TTAA 4 cut(s) 180, 189, 425, 650
TscAI CASTG 2 cut(s) 39, 758
TseFI GTSAC 1 cut(s) 39
TseI GCWGC 1 cut(s) 52
Tsp45I GTSAC 1 cut(s) 39
TspDTI ATGAA 5 cut(s) 17, 21, 36, 297, 568
TspRI CASTG 2 cut(s) 39, 758
VpaK11BI GGWCC 2 cut(s) 80, 224
XapI RAATTY 4 cut(s) 481, 528, 553, 732
XceI RCATGY 1 cut(s) 505
XcmI CCANNNNNNNNNTGG 2 cut(s) 103, 247
XmnI GAANNNNTTC 2 cut(s) 12, 599
XspI CTAG 1 cut(s) 495
ZrmI AGTACT 2 cut(s) 546, 575
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.