Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8431179.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

35 .. 959

Gene Structure 925 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8431179.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

atggacagagtggaagatgttttgatacatcaaaagcttctaacattggcaaaggacccggagaaacggcctgtttatcatacccgattcttggagagtatctctacggggacagatgatgatgaggatgaacaattcactagtaatgtttcaacctcaaggctatcatgtaacgaaatcaatgaagtagctgcgcagccacatgatagaactaggaattgtgctgttgactttgaaccttgctctaggctcggagacctaaatttggatgttagaaagaatgctaaggatgtcgatgaaagagatgtgctggagagttttcccagaaggtactcaacaagttttttttcttctttggttgccaaactttctgtttccctgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ACT Pkinase_Tyr

Protein Analysis

127

Amino Acids

14.49

Weight (kDa)

4.92

Isoelectric Point (pI)

34.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	195
AcsI	RAATTY	1 cut(s)	262
AfaI	GTAC	1 cut(s)	332
AfiI	CCNNNNNNNGG	2 cut(s)	91, 265
AgsI	TTSAA	2 cut(s)	153, 236
AhlI	ACTAGT	1 cut(s)	140
AluBI	AGCT	2 cut(s)	37, 191
AluI	AGCT	2 cut(s)	37, 191
Alw26I	GTCTC	1 cut(s)	249
AoxI	GGCC	1 cut(s)	68
ApeKI	GCWGC	2 cut(s)	191, 196
ApoI	RAATTY	1 cut(s)	262
AspLEI	GCGC	1 cut(s)	196
AspS9I	GGNCC	1 cut(s)	55
AsuC2I	CCSGG	1 cut(s)	59
AvaII	GGWCC	1 cut(s)	55
BbvI	GCAGC	2 cut(s)	178, 208
BceAI	ACGGC	1 cut(s)	83
BcnI	CCSGG	1 cut(s)	59
BcoDI	GTCTC	1 cut(s)	249
BcuI	ACTAGT	1 cut(s)	140
BfaI	CTAG	3 cut(s)	141, 213, 246
BisI	GCNGC	2 cut(s)	192, 197
BlsI	GCNGC	2 cut(s)	193, 198
Bme1390I	CCNGG	1 cut(s)	59
Bme18I	GGWCC	1 cut(s)	55
BmgT120I	GGNCC	1 cut(s)	55
BmiI	GGNNCC	1 cut(s)	57
BmrFI	CCNGG	1 cut(s)	59
BplI	GAGNNNNNCTC	2 cut(s)	86, 118
BpmI	CTGGAG	1 cut(s)	332
Bpu10I	CCTNAGC	1 cut(s)	285
BpuEI	CTTGAG	1 cut(s)	142
BpuMI	CCSGG	1 cut(s)	59
BsaI	GGTCTC	1 cut(s)	249
Bsc4I	CCNNNNNNNGG	2 cut(s)	91, 265
BseGI	GGATG	3 cut(s)	133, 274, 295
BseLI	CCNNNNNNNGG	2 cut(s)	91, 265
BseXI	GCAGC	2 cut(s)	178, 208
BshFI	GGCC	1 cut(s)	70
BsiSI	CCGG	1 cut(s)	59
BslFI	GGGAC	1 cut(s)	124
BslI	CCNNNNNNNGG	2 cut(s)	91, 265
BsmAI	GTCTC	1 cut(s)	249
BsmFI	GGGAC	1 cut(s)	124
BsmI	GAATGC	1 cut(s)	286
BsnI	GGCC	1 cut(s)	70
Bso31I	GGTCTC	1 cut(s)	249
BspANI	GGCC	1 cut(s)	70
BspLI	GGNNCC	1 cut(s)	57
BspTNI	GGTCTC	1 cut(s)	249
BstDEI	CTNAG	1 cut(s)	285
BstF5I	GGATG	3 cut(s)	133, 274, 295
BstHHI	GCGC	1 cut(s)	196
BstMAI	GTCTC	1 cut(s)	249
BstSCI	CCNGG	1 cut(s)	57
BstV1I	GCAGC	2 cut(s)	178, 208
BsuRI	GGCC	1 cut(s)	70
BtsCI	GGATG	3 cut(s)	133, 274, 295
CfoI	GCGC	1 cut(s)	196
Cfr13I	GGNCC	1 cut(s)	55
Csp6I	GTAC	1 cut(s)	331
CviAII	CATG	2 cut(s)	168, 203
CviJI	RGCY	6 cut(s)	37, 70, 163, 191, 199, 250
CviKI_1	RGCY	6 cut(s)	37, 70, 163, 191, 199, 250
CviQI	GTAC	1 cut(s)	331
DdeI	CTNAG	1 cut(s)	285
Eco31I	GGTCTC	1 cut(s)	249
Eco47I	GGWCC	1 cut(s)	55
EcoO109I	RGGNCCY	1 cut(s)	55
FaeI	CATG	2 cut(s)	171, 206
FaiI	YATR	3 cut(s)	81, 169, 204
FaqI	GGGAC	1 cut(s)	124
FatI	CATG	2 cut(s)	167, 202
Fnu4HI	GCNGC	2 cut(s)	192, 197
FokI	GGATG	3 cut(s)	140, 281, 302
Fsp4HI	GCNGC	2 cut(s)	192, 197
FspBI	CTAG	3 cut(s)	141, 213, 246
FspI	TGCGCA	1 cut(s)	195
GlaI	GCGC	1 cut(s)	195
GluI	GCNGC	2 cut(s)	192, 197
GsuI	CTGGAG	1 cut(s)	332
HaeIII	GGCC	1 cut(s)	70
HapII	CCGG	1 cut(s)	59
HhaI	GCGC	1 cut(s)	196
Hin1II	CATG	2 cut(s)	171, 206
Hin6I	GCGC	1 cut(s)	194
HinP1I	GCGC	1 cut(s)	194
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HindIII	AAGCTT	1 cut(s)	35
HinfI	GANTC	1 cut(s)	87
HpaII	CCGG	1 cut(s)	59
Hpy166II	GTNNAC	1 cut(s)	229
Hpy188I	TCNGA	1 cut(s)	254
Hpy8I	GTNNAC	1 cut(s)	229
HpyAV	CCTTC	1 cut(s)	321
HpyF3I	CTNAG	1 cut(s)	285
Hsp92II	CATG	2 cut(s)	171, 206
HspAI	GCGC	1 cut(s)	194
LpnPI	CCDG	4 cut(s)	72, 84, 296, 337
Lsp1109I	GCAGC	2 cut(s)	178, 208
MaeI	CTAG	3 cut(s)	141, 213, 246
MaeIII	GTNAC	1 cut(s)	170
MboII	GAAGA	2 cut(s)	26, 342
MluCI	AATT	3 cut(s)	134, 217, 262
MnlI	CCTC	2 cut(s)	118, 166
MspI	CCGG	1 cut(s)	59
MspR9I	CCNGG	1 cut(s)	59
Mva1269I	GAATGC	1 cut(s)	286
NciI	CCSGG	1 cut(s)	59
NlaIII	CATG	2 cut(s)	171, 206
NlaIV	GGNNCC	1 cut(s)	57
NsbI	TGCGCA	1 cut(s)	195
PctI	GAATGC	1 cut(s)	286
PfeI	GAWTC	1 cut(s)	87
PkrI	GCNGC	2 cut(s)	193, 198
PpuMI	RGGWCCY	1 cut(s)	55
Psp5II	RGGWCCY	1 cut(s)	55
PspN4I	GGNNCC	1 cut(s)	57
PspPI	GGNCC	1 cut(s)	55
PspPPI	RGGWCCY	1 cut(s)	55
RsaI	GTAC	1 cut(s)	332
RsaNI	GTAC	1 cut(s)	331
SatI	GCNGC	2 cut(s)	192, 197
Sau96I	GGNCC	1 cut(s)	55
ScrFI	CCNGG	1 cut(s)	59
SetI	ASST	6 cut(s)	39, 158, 193, 241, 261, 332
SinI	GGWCC	1 cut(s)	55
SmlI	CTYRAG	1 cut(s)	157
SmoI	CTYRAG	1 cut(s)	157
SpeI	ACTAGT	1 cut(s)	140
Sse9I	AATT	3 cut(s)	134, 217, 262
SspMI	CTAG	3 cut(s)	141, 213, 246
StyD4I	CCNGG	1 cut(s)	57
TaqI	TCGA	1 cut(s)	294
TasI	AATT	3 cut(s)	134, 217, 262
TfiI	GAWTC	1 cut(s)	87
TseI	GCWGC	2 cut(s)	191, 196
TspDTI	ATGAA	3 cut(s)	144, 198, 312
VpaK11BI	GGWCC	1 cut(s)	55
XapI	RAATTY	1 cut(s)	262
XspI	CTAG	3 cut(s)	141, 213, 246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.