Rmu_co8444315.1_g000001

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8444315.1
N/A
Physical Location & Seq
Forward (+)
238 .. 1566
1329 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8444315.1_g000001.1.cds

Sequence Viewer

Length: 663 bp
atgggacctacgacgccttcaacaacgaagctaacaccaagtacgccaggtctagccgttacggccacgcctccttcttcgacaaaggtgatgctccaagacgctgccaaccacgaaattgcttccttcctttatgccatcgacgggtcaatgtcccagaggccttcctcctccactccatgtcctgcgaatcgtgggattgcaaaattcgagttctccaccgatgagcctgacgcagctcccgtgtgcaagaatgatgtgctttcgggtttagggatggaagacactcgcaggggttttgtagcccattcataccatgaattgcaaaacacagaccaggttgaagaaggggtagccctgccctctacatctctttcctcaactgaaccaagtcctcgaccagctcttgggcagaagaatgatgaggtattgggtttcaggggaaacgacgctcaaaggagttttgtcacccattcaggtcatgaaatacaagacaccagagtgactaagacattcaccgataaagaacaccttgaaaaagggatagctgtcccctctacgtctccgccttcatcagctgaacgagatcctcggccgaaaatcaagatttgcgatcattgtgttgtcaataaattatgctacttcttcatggtgtttggatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

220

Amino Acids

23.7

Weight (kDa)

5.79

Isoelectric Point (pI)

47.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 407
AciI CCGC 1 cut(s) 566
AclWI GGATC 1 cut(s) 581
AcoI YGGCCR 2 cut(s) 63, 593
AcsI RAATTY 1 cut(s) 206
AcyI GRCGYC 1 cut(s) 14
AfaI GTAC 1 cut(s) 43
AfiI CCNNNNNNNGG 2 cut(s) 144, 407
AgsI TTSAA 3 cut(s) 21, 344, 536
AjnI CCWGG 2 cut(s) 46, 336
AleI CACNNNNGTG 1 cut(s) 500
AluBI AGCT 5 cut(s) 31, 239, 404, 548, 578
AluI AGCT 5 cut(s) 31, 239, 404, 548, 578
Alw26I GTCTC 1 cut(s) 567
AlwI GGATC 1 cut(s) 581
AoxI GGCC 3 cut(s) 63, 161, 593
ApeKI GCWGC 2 cut(s) 104, 236
ApoI RAATTY 1 cut(s) 206
AspS9I GGNCC 1 cut(s) 5
AsuHPI GGTGA 3 cut(s) 100, 460, 508
AvaII GGWCC 1 cut(s) 5
BbsI GAAGAC 1 cut(s) 288
BbvI GCAGC 2 cut(s) 91, 248
BccI CCATC 2 cut(s) 146, 271
BceAI ACGGC 2 cut(s) 41, 78
BciT130I CCWGG 2 cut(s) 48, 338
BcoDI GTCTC 1 cut(s) 567
BfaI CTAG 1 cut(s) 53
BglI GCCNNNNNGGC 1 cut(s) 62
BisI GCNGC 2 cut(s) 105, 237
BlsI GCNGC 2 cut(s) 106, 238
Bme1390I CCNGG 2 cut(s) 48, 338
Bme18I GGWCC 1 cut(s) 5
BmgT120I GGNCC 1 cut(s) 5
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 2 cut(s) 48, 338
BmsI GCATC 1 cut(s) 81
BpiI GAAGAC 1 cut(s) 288
BsaHI GRCGYC 1 cut(s) 14
BsaJI CCNNGG 1 cut(s) 590
Bsc4I CCNNNNNNNGG 2 cut(s) 144, 407
BseBI CCWGG 2 cut(s) 48, 338
BseDI CCNNGG 1 cut(s) 590
BseGI GGATG 1 cut(s) 282
BseLI CCNNNNNNNGG 2 cut(s) 144, 407
BseRI GAGGAG 1 cut(s) 160
BseX3I CGGCCG 1 cut(s) 593
BseXI GCAGC 2 cut(s) 91, 248
Bsh1285I CGRYCG 1 cut(s) 596
BshFI GGCC 3 cut(s) 65, 163, 595
BsiEI CGRYCG 1 cut(s) 596
BslFI GGGAC 3 cut(s) 18, 139, 536
BslI CCNNNNNNNGG 2 cut(s) 144, 407
BsmAI GTCTC 1 cut(s) 567
BsmBI CGTCTC 1 cut(s) 567
BsmFI GGGAC 3 cut(s) 18, 139, 536
BsnI GGCC 3 cut(s) 65, 163, 595
Bsp143I GATC 2 cut(s) 586, 613
BspACI CCGC 1 cut(s) 566
BspANI GGCC 3 cut(s) 65, 163, 595
BspHI TCATGA 1 cut(s) 481
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 581
BssECI CCNNGG 1 cut(s) 590
BssMI GATC 2 cut(s) 586, 613
BssNI GRCGYC 1 cut(s) 14
Bst2UI CCWGG 2 cut(s) 48, 338
BstACI GRCGYC 1 cut(s) 14
BstDEI CTNAG 1 cut(s) 507
BstF5I GGATG 1 cut(s) 282
BstKTI GATC 2 cut(s) 589, 616
BstMAI GTCTC 1 cut(s) 567
BstMBI GATC 2 cut(s) 586, 613
BstMCI CGRYCG 1 cut(s) 596
BstMWI GCNNNNNNNGC 1 cut(s) 62
BstNI CCWGG 2 cut(s) 48, 338
BstSCI CCNGG 2 cut(s) 46, 336
BstV1I GCAGC 2 cut(s) 91, 248
BstV2I GAAGAC 1 cut(s) 288
BstX2I RGATCY 1 cut(s) 586
BstYI RGATCY 1 cut(s) 586
BstZI CGGCCG 1 cut(s) 593
BsuRI GGCC 3 cut(s) 65, 163, 595
BtsCI GGATG 1 cut(s) 282
CciI TCATGA 1 cut(s) 481
Cfr13I GGNCC 1 cut(s) 5
CseI GACGC 4 cut(s) 22, 110, 242, 458
CsiI ACCWGGT 1 cut(s) 336
Csp6I GTAC 1 cut(s) 42
CviAII CATG 4 cut(s) 180, 317, 482, 649
CviQI GTAC 1 cut(s) 42
DdeI CTNAG 1 cut(s) 507
DpnI GATC 2 cut(s) 588, 615
DpnII GATC 2 cut(s) 586, 613
EaeI YGGCCR 2 cut(s) 63, 593
EagI CGGCCG 1 cut(s) 593
EciI GGCGGA 1 cut(s) 555
EclXI CGGCCG 1 cut(s) 593
Eco147I AGGCCT 1 cut(s) 163
Eco47I GGWCC 1 cut(s) 5
Eco52I CGGCCG 1 cut(s) 593
EcoO109I RGGNCCY 1 cut(s) 5
EcoRII CCWGG 2 cut(s) 46, 336
Esp3I CGTCTC 1 cut(s) 567
FaeI CATG 4 cut(s) 183, 320, 485, 652
FaiI YATR 7 cut(s) 135, 181, 313, 318, 483, 637, 650
FalI AAGNNNNNCTT 2 cut(s) 516, 548
FaqI GGGAC 3 cut(s) 18, 139, 536
FatI CATG 4 cut(s) 179, 316, 481, 648
Fnu4HI GCNGC 2 cut(s) 105, 237
FokI GGATG 1 cut(s) 289
Fsp4HI GCNGC 2 cut(s) 105, 237
FspBI CTAG 1 cut(s) 53
GluI GCNGC 2 cut(s) 105, 237
HaeIII GGCC 3 cut(s) 65, 163, 595
HgaI GACGC 4 cut(s) 22, 110, 242, 458
Hin1I GRCGYC 1 cut(s) 14
Hin1II CATG 4 cut(s) 183, 320, 485, 652
HinfI GANTC 1 cut(s) 190
HphI GGTGA 3 cut(s) 100, 460, 508
Hpy188III TCNNGA 2 cut(s) 482, 604
Hpy99I CGWCG 3 cut(s) 16, 146, 452
HpyAV CCTTC 6 cut(s) 27, 84, 136, 174, 341, 579
HpyCH4IV ACGT 1 cut(s) 560
HpyCH4V TGCA 3 cut(s) 203, 249, 325
HpyF10VI GCNNNNNNNGC 1 cut(s) 62
HpyF3I CTNAG 1 cut(s) 507
HpySE526I ACGT 1 cut(s) 560
Hsp92I GRCGYC 1 cut(s) 14
Hsp92II CATG 4 cut(s) 183, 320, 485, 652
Kzo9I GATC 2 cut(s) 586, 613
LmnI GCTCC 2 cut(s) 99, 244
Lsp1109I GCAGC 2 cut(s) 91, 248
LweI GCATC 1 cut(s) 81
MabI ACCWGGT 1 cut(s) 336
MaeI CTAG 1 cut(s) 53
MaeII ACGT 1 cut(s) 560
MaeIII GTNAC 3 cut(s) 58, 466, 502
MalI GATC 2 cut(s) 588, 615
MboI GATC 2 cut(s) 586, 613
MboII GAAGA 5 cut(s) 69, 293, 356, 427, 637
MflI RGATCY 1 cut(s) 586
MluCI AATT 4 cut(s) 117, 206, 320, 632
MslI CAYNNNNRTG 1 cut(s) 500
MspA1I CMGCKG 1 cut(s) 578
MspR9I CCNGG 2 cut(s) 48, 338
MvaI CCWGG 2 cut(s) 48, 338
MwoI GCNNNNNNNGC 1 cut(s) 62
NdeII GATC 2 cut(s) 586, 613
NlaIII CATG 4 cut(s) 183, 320, 485, 652
NlaIV GGNNCC 1 cut(s) 6
NmeAIII GCCGAG 1 cut(s) 571
NmuCI GTSAC 2 cut(s) 466, 502
OliI CACNNNNGTG 1 cut(s) 500
PagI TCATGA 1 cut(s) 481
PceI AGGCCT 1 cut(s) 163
PcsI WCGNNNNNNNCGW 1 cut(s) 240
PfeI GAWTC 1 cut(s) 190
PflMI CCANNNNNTGG 1 cut(s) 407
PkrI GCNGC 2 cut(s) 106, 238
PpuMI RGGWCCY 1 cut(s) 5
Psp5II RGGWCCY 1 cut(s) 5
Psp6I CCWGG 2 cut(s) 46, 336
PspGI CCWGG 2 cut(s) 46, 336
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 5
PspPPI RGGWCCY 1 cut(s) 5
PsuI RGATCY 1 cut(s) 586
PvuII CAGCTG 1 cut(s) 578
RsaI GTAC 1 cut(s) 43
RsaNI GTAC 1 cut(s) 42
RseI CAYNNNNRTG 1 cut(s) 500
SatI GCNGC 2 cut(s) 105, 237
Sau3AI GATC 2 cut(s) 586, 613
Sau96I GGNCC 1 cut(s) 5
ScrFI CCNGG 2 cut(s) 48, 338
SexAI ACCWGGT 1 cut(s) 336
SfaNI GCATC 1 cut(s) 81
SinI GGWCC 1 cut(s) 5
SmiMI CAYNNNNRTG 1 cut(s) 500
Sse9I AATT 4 cut(s) 117, 206, 320, 632
SseBI AGGCCT 1 cut(s) 163
SsiI CCGC 1 cut(s) 566
SspMI CTAG 1 cut(s) 53
StuI AGGCCT 1 cut(s) 163
StyD4I CCNGG 2 cut(s) 46, 336
TaiI ACGT 1 cut(s) 563
TaqI TCGA 4 cut(s) 80, 141, 210, 397
TasI AATT 4 cut(s) 117, 206, 320, 632
TfiI GAWTC 1 cut(s) 190
TseFI GTSAC 2 cut(s) 466, 502
TseI GCWGC 2 cut(s) 104, 236
Tsp45I GTSAC 2 cut(s) 466, 502
TspDTI ATGAA 5 cut(s) 300, 333, 498, 561, 637
Van91I CCANNNNNTGG 1 cut(s) 407
VpaK11BI GGWCC 1 cut(s) 5
XapI RAATTY 1 cut(s) 206
XspI CTAG 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.