Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8450323.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

104 .. 493

Gene Structure 390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8450323.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

atggacaagaaacgcccaagtggggaacaaaaccttgtctcttgggctcggccatatttaactgacaagcgaaagcttttccttctcgtggatccccgcttggaattgaattactccatcaaaggggtacacaaagtctcacagttggcttatgactgccttaatagggaccccaaaacccggcctacaatggatgaagtagtaagggttcttactccattgcaagatcttaatgacctcgccatcttgtctcaccatgctcgtttatctcaacaagcaagacgcaagaagaaacccgatcatcatggaagtcaacagcagctgaccttcgtccactctaagagcatcagagcttctccattgaatactgggaagcagcaacgtcgatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

129

Amino Acids

14.99

Weight (kDa)

10.4

Isoelectric Point (pI)

47.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	97
AclWI	GGATC	2 cut(s)	86, 99
AcoI	YGGCCR	1 cut(s)	50
AfaI	GTAC	1 cut(s)	129
AfiI	CCNNNNNNNGG	5 cut(s)	22, 88, 123, 166, 180
AgsI	TTSAA	2 cut(s)	109, 364
AluBI	AGCT	3 cut(s)	76, 322, 353
AluI	AGCT	3 cut(s)	76, 322, 353
Alw26I	GTCTC	3 cut(s)	43, 142, 255
AlwI	GGATC	2 cut(s)	86, 99
AlwNI	CAGNNNCTG	1 cut(s)	322
AoxI	GGCC	2 cut(s)	50, 182
ApeKI	GCWGC	2 cut(s)	319, 376
AspS9I	GGNCC	1 cut(s)	169
AsuC2I	CCSGG	1 cut(s)	181
AsuHPI	GGTGA	1 cut(s)	245
AvaII	GGWCC	1 cut(s)	169
BamHI	GGATCC	1 cut(s)	91
BanII	GRGCYC	1 cut(s)	49
BauI	CACGAG	1 cut(s)	86
BbvI	GCAGC	1 cut(s)	331
BccI	CCATC	2 cut(s)	125, 251
BcgI	CGANNNNNNTGC	1 cut(s)	365
BcnI	CCSGG	1 cut(s)	181
BcoDI	GTCTC	3 cut(s)	43, 142, 255
BglII	AGATCT	1 cut(s)	226
BisI	GCNGC	2 cut(s)	320, 377
BlsI	GCNGC	2 cut(s)	321, 378
Bme1390I	CCNGG	1 cut(s)	181
Bme18I	GGWCC	1 cut(s)	169
BmgT120I	GGNCC	1 cut(s)	169
BmiI	GGNNCC	3 cut(s)	93, 170, 171
BmrFI	CCNGG	1 cut(s)	181
BmrI	ACTGGG	1 cut(s)	378
BmsI	GCATC	1 cut(s)	354
BmuI	ACTGGG	1 cut(s)	378
BoxI	GACNNNNGTC	1 cut(s)	329
BpuMI	CCSGG	1 cut(s)	181
Bsc4I	CCNNNNNNNGG	5 cut(s)	22, 88, 123, 166, 180
Bse1I	ACTGG	1 cut(s)	373
Bse3DI	GCAATG	1 cut(s)	218
BseGI	GGATG	1 cut(s)	199
BseLI	CCNNNNNNNGG	5 cut(s)	22, 88, 123, 166, 180
BseMI	GCAATG	1 cut(s)	218
BseNI	ACTGG	1 cut(s)	373
BseXI	GCAGC	1 cut(s)	331
BshFI	GGCC	2 cut(s)	52, 184
BsiSI	CCGG	1 cut(s)	181
BslFI	GGGAC	1 cut(s)	182
BslI	CCNNNNNNNGG	5 cut(s)	22, 88, 123, 166, 180
BsmAI	GTCTC	3 cut(s)	43, 142, 255
BsmFI	GGGAC	1 cut(s)	182
BsnI	GGCC	2 cut(s)	52, 184
Bsp1286I	GDGCHC	1 cut(s)	49
Bsp143I	GATC	3 cut(s)	91, 226, 298
BspACI	CCGC	1 cut(s)	97
BspANI	GGCC	2 cut(s)	52, 184
BspLI	GGNNCC	3 cut(s)	93, 170, 171
BspPI	GGATC	2 cut(s)	86, 99
BsrDI	GCAATG	1 cut(s)	218
BsrI	ACTGG	1 cut(s)	373
BssMI	GATC	3 cut(s)	91, 226, 298
BssSI	CACGAG	1 cut(s)	86
Bst2BI	CACGAG	1 cut(s)	86
Bst4CI	ACNGT	1 cut(s)	144
BstDEI	CTNAG	1 cut(s)	339
BstF5I	GGATG	1 cut(s)	199
BstKTI	GATC	3 cut(s)	94, 229, 301
BstMAI	GTCTC	3 cut(s)	43, 142, 255
BstMBI	GATC	3 cut(s)	91, 226, 298
BstPAI	GACNNNNGTC	1 cut(s)	329
BstSCI	CCNGG	1 cut(s)	179
BstV1I	GCAGC	1 cut(s)	331
BstX2I	RGATCY	2 cut(s)	91, 226
BstYI	RGATCY	2 cut(s)	91, 226
BsuRI	GGCC	2 cut(s)	52, 184
BtsCI	GGATG	1 cut(s)	199
CaiI	CAGNNNCTG	1 cut(s)	322
Cfr13I	GGNCC	1 cut(s)	169
CseI	GACGC	1 cut(s)	291
Csp6I	GTAC	1 cut(s)	128
CviAII	CATG	2 cut(s)	257, 305
CviJI	RGCY	7 cut(s)	47, 52, 76, 149, 184, 322, 353
CviKI_1	RGCY	7 cut(s)	47, 52, 76, 149, 184, 322, 353
CviQI	GTAC	1 cut(s)	128
DdeI	CTNAG	1 cut(s)	339
DpnI	GATC	3 cut(s)	93, 228, 300
DpnII	GATC	3 cut(s)	91, 226, 298
EaeI	YGGCCR	1 cut(s)	50
Eco24I	GRGCYC	1 cut(s)	49
Eco47I	GGWCC	1 cut(s)	169
EcoO109I	RGGNCCY	1 cut(s)	169
EcoT38I	GRGCYC	1 cut(s)	49
FaeI	CATG	2 cut(s)	260, 308
FaiI	YATR	4 cut(s)	55, 153, 258, 306
FaqI	GGGAC	1 cut(s)	182
FatI	CATG	2 cut(s)	256, 304
FauI	CCCGC	1 cut(s)	104
Fnu4HI	GCNGC	2 cut(s)	320, 377
FokI	GGATG	1 cut(s)	206
FriOI	GRGCYC	1 cut(s)	49
Fsp4HI	GCNGC	2 cut(s)	320, 377
GluI	GCNGC	2 cut(s)	320, 377
HaeIII	GGCC	2 cut(s)	52, 184
HapII	CCGG	1 cut(s)	181
HgaI	GACGC	1 cut(s)	291
Hin1II	CATG	2 cut(s)	260, 308
HincII	GTYRAC	1 cut(s)	314
HindII	GTYRAC	1 cut(s)	314
HindIII	AAGCTT	1 cut(s)	74
HpaII	CCGG	1 cut(s)	181
HphI	GGTGA	1 cut(s)	245
Hpy166II	GTNNAC	3 cut(s)	130, 314, 334
Hpy188I	TCNGA	1 cut(s)	350
Hpy8I	GTNNAC	3 cut(s)	130, 314, 334
Hpy99I	CGWCG	1 cut(s)	387
HpyAV	CCTTC	2 cut(s)	92, 337
HpyCH4III	ACNGT	1 cut(s)	144
HpyCH4IV	ACGT	1 cut(s)	382
HpyCH4V	TGCA	1 cut(s)	223
HpyF3I	CTNAG	1 cut(s)	339
HpySE526I	ACGT	1 cut(s)	382
Hsp92II	CATG	2 cut(s)	260, 308
KflI	GGGWCCC	1 cut(s)	169
Kzo9I	GATC	3 cut(s)	91, 226, 298
LpnPI	CCDG	2 cut(s)	194, 354
Lsp1109I	GCAGC	1 cut(s)	331
LweI	GCATC	1 cut(s)	354
MaeII	ACGT	1 cut(s)	382
MalI	GATC	3 cut(s)	93, 228, 300
MboI	GATC	3 cut(s)	91, 226, 298
MboII	GAAGA	1 cut(s)	301
MflI	RGATCY	2 cut(s)	91, 226
MhlI	GDGCHC	1 cut(s)	49
MluCI	AATT	2 cut(s)	104, 109
MnlI	CCTC	1 cut(s)	248
MseI	TTAA	3 cut(s)	59, 162, 231
MspA1I	CMGCKG	1 cut(s)	322
MspI	CCGG	1 cut(s)	181
MspR9I	CCNGG	1 cut(s)	181
NciI	CCSGG	1 cut(s)	181
NdeII	GATC	3 cut(s)	91, 226, 298
NlaIII	CATG	2 cut(s)	260, 308
NlaIV	GGNNCC	3 cut(s)	93, 170, 171
NmeAIII	GCCGAG	1 cut(s)	28
PkrI	GCNGC	2 cut(s)	321, 378
PpuMI	RGGWCCY	1 cut(s)	169
PshAI	GACNNNNGTC	1 cut(s)	329
Psp5II	RGGWCCY	1 cut(s)	169
PspN4I	GGNNCC	3 cut(s)	93, 170, 171
PspPI	GGNCC	1 cut(s)	169
PspPPI	RGGWCCY	1 cut(s)	169
PsrI	GAACNNNNNNTAC	2 cut(s)	192, 224
PstNI	CAGNNNCTG	1 cut(s)	322
PsuI	RGATCY	2 cut(s)	91, 226
PvuII	CAGCTG	1 cut(s)	322
RsaI	GTAC	1 cut(s)	129
RsaNI	GTAC	1 cut(s)	128
SaqAI	TTAA	3 cut(s)	59, 162, 231
SatI	GCNGC	2 cut(s)	320, 377
Sau3AI	GATC	3 cut(s)	91, 226, 298
Sau96I	GGNCC	1 cut(s)	169
ScrFI	CCNGG	1 cut(s)	181
SduI	GDGCHC	1 cut(s)	49
SetI	ASST	7 cut(s)	36, 78, 240, 324, 329, 355, 385
SfaNI	GCATC	1 cut(s)	354
SinI	GGWCC	1 cut(s)	169
Sse9I	AATT	2 cut(s)	104, 109
SsiI	CCGC	1 cut(s)	97
StyD4I	CCNGG	1 cut(s)	179
TaaI	ACNGT	1 cut(s)	144
TaiI	ACGT	1 cut(s)	385
TaqI	TCGA	1 cut(s)	385
TasI	AATT	2 cut(s)	104, 109
Tru1I	TTAA	3 cut(s)	59, 162, 231
Tru9I	TTAA	3 cut(s)	59, 162, 231
TseI	GCWGC	2 cut(s)	319, 376
TspDTI	ATGAA	1 cut(s)	210
VpaK11BI	GGWCC	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.