Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8491351.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

1042 .. 1635

Gene Structure 594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8491351.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

atgggttatgcagcacctgagtatatccagactggacgtctaacatctaaaaatgatgtgtggagctatggggtctttctctatgagctcattacaggtaggcgtcctctggatcgaaaccggcccaagagtgagcagaaactcttagaatgggtaaagccatacctgtcagacttgaagaagttcaggttaataatagaccctaggcttgaaggtaagtaccccctcaagtcagttcaaaagcttgcaattgtagccaacagatgtttggtcagactccccaagaaccgtccaaagatgactgaggtgttggaaatggtaaatcagattatagaggcaccatcaggccagaaaaaaaccaaggaggcaccattgggccaaatcaaattcaaggaggcaccatctggcgaaaataagatcatggaggcaccaacaggaacagcaagtctgccactaccaccggtcaatttggcaccaatagaaacttccagggaccatgaaacagtgagcaagaaaagaaatgtggaaatgaggaggggagaaactggttggttatctcgtatgtggacaccgaagcttttaaggacatgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002221 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0002757 GO:0002758 GO:0002764 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0009987 GO:0010337 GO:0010565 GO:0010817 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019222 GO:0019538 GO:0023052 GO:0031323 GO:0031326 GO:0031347 GO:0031349 GO:0032350 GO:0035821 GO:0036211 GO:0038023 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044464 GO:0045088 GO:0045089 GO:0046885 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0060089 GO:0062012 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:0075136 GO:0080134 GO:0080142 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

197

Amino Acids

22.57

Weight (kDa)

9.94

Isoelectric Point (pI)

39.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	40
AccB1I	GGYRCC	5 cut(s)	337, 367, 397, 427, 472
AclWI	GGATC	1 cut(s)	120
AcsI	RAATTY	1 cut(s)	386
AcyI	GRCGYC	2 cut(s)	37, 103
AfaI	GTAC	1 cut(s)	221
AgeI	ACCGGT	1 cut(s)	460
AgsI	TTSAA	4 cut(s)	178, 212, 239, 391
AhdI	GACNNNNNGTC	1 cut(s)	36
AjnI	CCWGG	1 cut(s)	488
AjuI	GAANNNNNNNTTGG	2 cut(s)	469, 501
AluBI	AGCT	4 cut(s)	66, 88, 244, 577
AluI	AGCT	4 cut(s)	66, 88, 244, 577
Alw21I	GWGCWC	1 cut(s)	90
AlwI	GGATC	1 cut(s)	120
AlwNI	CAGNNNCTG	1 cut(s)	17
AoxI	GGCC	3 cut(s)	122, 346, 376
ApeKI	GCWGC	1 cut(s)	11
ApoI	RAATTY	1 cut(s)	386
AsiGI	ACCGGT	1 cut(s)	460
Asp700I	GAANNNNTTC	1 cut(s)	182
AspA2I	CCTAGG	1 cut(s)	203
AspS9I	GGNCC	3 cut(s)	123, 376, 493
AvaII	GGWCC	1 cut(s)	493
AvrII	CCTAGG	1 cut(s)	203
BanI	GGYRCC	5 cut(s)	337, 367, 397, 427, 472
BanII	GRGCYC	1 cut(s)	90
Bbv12I	GWGCWC	1 cut(s)	90
BbvI	GCAGC	1 cut(s)	23
BccI	CCATC	2 cut(s)	349, 409
BciT130I	CCWGG	1 cut(s)	490
BfaI	CTAG	1 cut(s)	204
BisI	GCNGC	1 cut(s)	12
BlnI	CCTAGG	1 cut(s)	203
BlsI	GCNGC	1 cut(s)	13
Bme1390I	CCNGG	1 cut(s)	490
Bme18I	GGWCC	1 cut(s)	493
BmeRI	GACNNNNNGTC	1 cut(s)	36
BmgT120I	GGNCC	3 cut(s)	123, 376, 493
BmiI	GGNNCC	6 cut(s)	339, 369, 399, 429, 474, 494
BmrFI	CCNGG	1 cut(s)	490
BpuEI	CTTGAG	1 cut(s)	212
BsaHI	GRCGYC	2 cut(s)	37, 103
BsaJI	CCNNGG	3 cut(s)	203, 360, 489
BsaWI	WCCGGW	1 cut(s)	460
Bse118I	RCCGGY	2 cut(s)	120, 460
Bse1I	ACTGG	2 cut(s)	37, 550
BseBI	CCWGG	1 cut(s)	490
BseDI	CCNNGG	3 cut(s)	203, 360, 489
BseMII	CTCAG	2 cut(s)	9, 294
BseNI	ACTGG	2 cut(s)	37, 550
BseRI	GAGGAG	1 cut(s)	547
BseXI	GCAGC	1 cut(s)	23
BshFI	GGCC	3 cut(s)	124, 348, 378
BshNI	GGYRCC	5 cut(s)	337, 367, 397, 427, 472
BshTI	ACCGGT	1 cut(s)	460
BsiHKAI	GWGCWC	1 cut(s)	90
BsiSI	CCGG	2 cut(s)	121, 461
BslFI	GGGAC	1 cut(s)	506
BsmFI	GGGAC	1 cut(s)	506
BsnI	GGCC	3 cut(s)	124, 348, 378
Bsp1286I	GDGCHC	1 cut(s)	90
Bsp143I	GATC	2 cut(s)	112, 417
BspANI	GGCC	3 cut(s)	124, 348, 378
BspCNI	CTCAG	2 cut(s)	10, 295
BspLI	GGNNCC	6 cut(s)	339, 369, 399, 429, 474, 494
BspPI	GGATC	1 cut(s)	120
BspT107I	GGYRCC	5 cut(s)	337, 367, 397, 427, 472
BsrFI	RCCGGY	2 cut(s)	120, 460
BsrI	ACTGG	2 cut(s)	37, 550
BssAI	RCCGGY	2 cut(s)	120, 460
BssECI	CCNNGG	3 cut(s)	203, 360, 489
BssMI	GATC	2 cut(s)	112, 417
BssNI	GRCGYC	2 cut(s)	37, 103
BssT1I	CCWWGG	2 cut(s)	203, 360
Bst2UI	CCWGG	1 cut(s)	490
Bst4CI	ACNGT	2 cut(s)	290, 505
BstACI	GRCGYC	2 cut(s)	37, 103
BstC8I	GCNNGC	1 cut(s)	246
BstDEI	CTNAG	3 cut(s)	18, 145, 303
BstKTI	GATC	2 cut(s)	115, 420
BstMBI	GATC	2 cut(s)	112, 417
BstMWI	GCNNNNNNNGC	1 cut(s)	254
BstNI	CCWGG	1 cut(s)	490
BstNSI	RCATGY	1 cut(s)	591
BstSCI	CCNGG	1 cut(s)	488
BstV1I	GCAGC	1 cut(s)	23
BsuRI	GGCC	3 cut(s)	124, 348, 378
BtsIMutI	CAGTG	1 cut(s)	510
Cac8I	GCNNGC	1 cut(s)	246
CaiI	CAGNNNCTG	1 cut(s)	17
Cfr10I	RCCGGY	2 cut(s)	120, 460
Cfr13I	GGNCC	3 cut(s)	123, 376, 493
CseI	GACGC	1 cut(s)	92
Csp6I	GTAC	1 cut(s)	220
CspAI	ACCGGT	1 cut(s)	460
CviAII	CATG	3 cut(s)	421, 497, 588
CviQI	GTAC	1 cut(s)	220
DdeI	CTNAG	3 cut(s)	18, 145, 303
DpnI	GATC	2 cut(s)	114, 419
DpnII	GATC	2 cut(s)	112, 417
DriI	GACNNNNNGTC	1 cut(s)	36
Eam1105I	GACNNNNNGTC	1 cut(s)	36
Ecl136II	GAGCTC	1 cut(s)	88
Eco130I	CCWWGG	2 cut(s)	203, 360
Eco24I	GRGCYC	1 cut(s)	90
Eco47I	GGWCC	1 cut(s)	493
Eco53kI	GAGCTC	1 cut(s)	88
EcoICRI	GAGCTC	1 cut(s)	88
EcoRII	CCWGG	1 cut(s)	488
EcoT14I	CCWWGG	2 cut(s)	203, 360
EcoT38I	GRGCYC	1 cut(s)	90
ErhI	CCWWGG	2 cut(s)	203, 360
FaeI	CATG	3 cut(s)	424, 500, 591
FaqI	GGGAC	1 cut(s)	506
FatI	CATG	3 cut(s)	420, 496, 587
Fnu4HI	GCNGC	1 cut(s)	12
FriOI	GRGCYC	1 cut(s)	90
Fsp4HI	GCNGC	1 cut(s)	12
FspBI	CTAG	1 cut(s)	204
GluI	GCNGC	1 cut(s)	12
HaeIII	GGCC	3 cut(s)	124, 348, 378
HapII	CCGG	2 cut(s)	121, 461
HgaI	GACGC	1 cut(s)	92
Hin1I	GRCGYC	2 cut(s)	37, 103
Hin1II	CATG	3 cut(s)	424, 500, 591
HindIII	AAGCTT	2 cut(s)	242, 575
HinfI	GANTC	1 cut(s)	276
HpaII	CCGG	2 cut(s)	121, 461
Hpy166II	GTNNAC	1 cut(s)	567
Hpy188I	TCNGA	3 cut(s)	172, 275, 327
Hpy188III	TCNNGA	2 cut(s)	28, 110
Hpy8I	GTNNAC	1 cut(s)	567
HpyAV	CCTTC	1 cut(s)	206
HpyCH4III	ACNGT	2 cut(s)	290, 505
HpyCH4IV	ACGT	1 cut(s)	37
HpyCH4V	TGCA	2 cut(s)	11, 248
HpyF10VI	GCNNNNNNNGC	1 cut(s)	254
HpyF3I	CTNAG	3 cut(s)	18, 145, 303
HpySE526I	ACGT	1 cut(s)	37
Hsp92I	GRCGYC	2 cut(s)	37, 103
Hsp92II	CATG	3 cut(s)	424, 500, 591
Kzo9I	GATC	2 cut(s)	112, 417
LmnI	GCTCC	1 cut(s)	63
Lsp1109I	GCAGC	1 cut(s)	23
MaeI	CTAG	1 cut(s)	204
MaeII	ACGT	1 cut(s)	37
MalI	GATC	2 cut(s)	114, 419
MboI	GATC	2 cut(s)	112, 417
MboII	GAAGA	1 cut(s)	190
MfeI	CAATTG	1 cut(s)	249
MhlI	GDGCHC	1 cut(s)	90
MluCI	AATT	3 cut(s)	249, 386, 466
MlyI	GAGTC	1 cut(s)	270
MmeI	TCCRAC	1 cut(s)	291
MnlI	CCTC	9 cut(s)	117, 236, 298, 328, 358, 388, 418, 525, 528
MroXI	GAANNNNTTC	1 cut(s)	182
MseI	TTAA	2 cut(s)	191, 581
MspI	CCGG	2 cut(s)	121, 461
MspR9I	CCNGG	1 cut(s)	490
MunI	CAATTG	1 cut(s)	249
MvaI	CCWGG	1 cut(s)	490
MwoI	GCNNNNNNNGC	1 cut(s)	254
NdeII	GATC	2 cut(s)	112, 417
NlaIII	CATG	3 cut(s)	424, 500, 591
NlaIV	GGNNCC	6 cut(s)	339, 369, 399, 429, 474, 494
NspI	RCATGY	1 cut(s)	591
PdmI	GAANNNNTTC	1 cut(s)	182
PinAI	ACCGGT	1 cut(s)	460
PkrI	GCNGC	1 cut(s)	13
PleI	GAGTC	1 cut(s)	270
PpsI	GAGTC	1 cut(s)	270
Psp124BI	GAGCTC	1 cut(s)	90
Psp6I	CCWGG	1 cut(s)	488
PspGI	CCWGG	1 cut(s)	488
PspN4I	GGNNCC	6 cut(s)	339, 369, 399, 429, 474, 494
PspPI	GGNCC	3 cut(s)	123, 376, 493
PstNI	CAGNNNCTG	1 cut(s)	17
RsaI	GTAC	1 cut(s)	221
RsaNI	GTAC	1 cut(s)	220
SacI	GAGCTC	1 cut(s)	90
SaqAI	TTAA	2 cut(s)	191, 581
SatI	GCNGC	1 cut(s)	12
Sau3AI	GATC	2 cut(s)	112, 417
Sau96I	GGNCC	3 cut(s)	123, 376, 493
SchI	GAGTC	1 cut(s)	270
ScrFI	CCNGG	1 cut(s)	490
SduI	GDGCHC	1 cut(s)	90
SinI	GGWCC	1 cut(s)	493
SmlI	CTYRAG	1 cut(s)	227
SmoI	CTYRAG	1 cut(s)	227
Sse9I	AATT	3 cut(s)	249, 386, 466
SspMI	CTAG	1 cut(s)	204
SstI	GAGCTC	1 cut(s)	90
StyD4I	CCNGG	1 cut(s)	488
StyI	CCWWGG	2 cut(s)	203, 360
TaaI	ACNGT	2 cut(s)	290, 505
TaiI	ACGT	1 cut(s)	40
TaqI	TCGA	1 cut(s)	115
TasI	AATT	3 cut(s)	249, 386, 466
Tru1I	TTAA	2 cut(s)	191, 581
Tru9I	TTAA	2 cut(s)	191, 581
TscAI	CASTG	1 cut(s)	510
TseI	GCWGC	1 cut(s)	11
TspDTI	ATGAA	1 cut(s)	513
TspRI	CASTG	1 cut(s)	510
VpaK11BI	GGWCC	1 cut(s)	493
XapI	RAATTY	1 cut(s)	386
XceI	RCATGY	1 cut(s)	591
XcmI	CCANNNNNNNNNTGG	1 cut(s)	265
XmaJI	CCTAGG	1 cut(s)	203
XmnI	GAANNNNTTC	1 cut(s)	182
XspI	CTAG	1 cut(s)	204
ZraI	GACGTC	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.