Rmu_sc0000013.1_g000002

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000013.1
N/A
Physical Location & Seq
Reverse (-)
3896 .. 4264
369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000013.1_g000002.1.cds

Sequence Viewer

Length: 369 bp
atgagctctaaggccattgaagcagcttcttcctcttcttcttcttctttctccaattcatacacatatgatgtctttttgagtttcagaggggaggatactcgctgcaatttgactaatcatttgtacaatgcgttgcgtcataagggaattaccttcatagatgctaagcttccaagaggagaagaaatatcagcggagcttgtcaaagcaatcgaggagtccagggtttcaatcattatcttctctgagaactatgcatcgtcaaggtggtgtttggatgaactcgttaagatccttcaatgtagagcatcaaaaagacaaatggttagaccggttttctacaaggtggatccctctgatgtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

122

Amino Acids

13.81

Weight (kDa)

7.71

Isoelectric Point (pI)

69.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 197
AclWI GGATC 3 cut(s) 289, 347, 360
AfaI GTAC 1 cut(s) 128
AgeI ACCGGT 1 cut(s) 334
AgsI TTSAA 3 cut(s) 20, 234, 302
AjnI CCWGG 1 cut(s) 224
AluBI AGCT 4 cut(s) 6, 26, 172, 202
AluI AGCT 4 cut(s) 6, 26, 172, 202
Alw21I GWGCWC 1 cut(s) 8
AlwI GGATC 3 cut(s) 289, 347, 360
AoxI GGCC 1 cut(s) 12
ApeKI GCWGC 2 cut(s) 23, 105
ArsI GACNNNNNNTTYG 2 cut(s) 106, 138
AsiGI ACCGGT 1 cut(s) 334
BamHI GGATCC 1 cut(s) 352
BanII GRGCYC 1 cut(s) 8
Bbv12I GWGCWC 1 cut(s) 8
BbvI GCAGC 2 cut(s) 35, 92
BciT130I CCWGG 1 cut(s) 226
BciVI GTATCC 1 cut(s) 91
BfuI GTATCC 1 cut(s) 91
BisI GCNGC 2 cut(s) 24, 106
BlpI GCTNAGC 1 cut(s) 168
BlsI GCNGC 2 cut(s) 25, 107
Bme1390I CCNGG 1 cut(s) 226
BmiI GGNNCC 1 cut(s) 354
BmrFI CCNGG 1 cut(s) 226
BmsI GCATC 3 cut(s) 154, 269, 320
Bpu1102I GCTNAGC 1 cut(s) 168
BsaJI CCNNGG 1 cut(s) 225
BsaWI WCCGGW 1 cut(s) 334
Bse118I RCCGGY 1 cut(s) 334
BseBI CCWGG 1 cut(s) 226
BseDI CCNNGG 1 cut(s) 225
BseGI GGATG 1 cut(s) 286
BseMII CTCAG 1 cut(s) 240
BseRI GAGGAG 2 cut(s) 195, 233
BseXI GCAGC 2 cut(s) 35, 92
BshFI GGCC 1 cut(s) 14
BshTI ACCGGT 1 cut(s) 334
BsiHKAI GWGCWC 1 cut(s) 8
BsiSI CCGG 1 cut(s) 335
BsnI GGCC 1 cut(s) 14
Bsp1286I GDGCHC 1 cut(s) 8
Bsp1407I TGTACA 1 cut(s) 126
Bsp143I GATC 2 cut(s) 294, 352
Bsp1720I GCTNAGC 1 cut(s) 168
BspACI CCGC 1 cut(s) 197
BspANI GGCC 1 cut(s) 14
BspCNI CTCAG 1 cut(s) 241
BspLI GGNNCC 1 cut(s) 354
BspPI GGATC 3 cut(s) 289, 347, 360
BsrFI RCCGGY 1 cut(s) 334
BsrGI TGTACA 1 cut(s) 126
BssAI RCCGGY 1 cut(s) 334
BssECI CCNNGG 1 cut(s) 225
BssMI GATC 2 cut(s) 294, 352
Bst2UI CCWGG 1 cut(s) 226
Bst6I CTCTTC 1 cut(s) 40
BstAUI TGTACA 1 cut(s) 126
BstDEI CTNAG 3 cut(s) 9, 168, 249
BstF5I GGATG 1 cut(s) 286
BstKTI GATC 2 cut(s) 297, 355
BstMBI GATC 2 cut(s) 294, 352
BstMWI GCNNNNNNNGC 1 cut(s) 20
BstNI CCWGG 1 cut(s) 226
BstSCI CCNGG 1 cut(s) 224
BstV1I GCAGC 2 cut(s) 35, 92
BstX2I RGATCY 2 cut(s) 294, 352
BstYI RGATCY 2 cut(s) 294, 352
BsuI GTATCC 1 cut(s) 91
BsuRI GGCC 1 cut(s) 14
BtsCI GGATG 1 cut(s) 286
Cfr10I RCCGGY 1 cut(s) 334
CseI GACGC 1 cut(s) 128
Csp6I GTAC 1 cut(s) 127
CspAI ACCGGT 1 cut(s) 334
CviJI RGCY 5 cut(s) 6, 14, 26, 172, 202
CviKI_1 RGCY 5 cut(s) 6, 14, 26, 172, 202
CviQI GTAC 1 cut(s) 127
DdeI CTNAG 3 cut(s) 9, 168, 249
DpnI GATC 2 cut(s) 296, 354
DpnII GATC 2 cut(s) 294, 352
Eam1104I CTCTTC 1 cut(s) 40
EarI CTCTTC 1 cut(s) 40
Ecl136II GAGCTC 1 cut(s) 6
Eco24I GRGCYC 1 cut(s) 8
Eco53kI GAGCTC 1 cut(s) 6
EcoICRI GAGCTC 1 cut(s) 6
EcoRII CCWGG 1 cut(s) 224
EcoT22I ATGCAT 1 cut(s) 262
EcoT38I GRGCYC 1 cut(s) 8
FaiI YATR 6 cut(s) 61, 67, 69, 144, 161, 258
FauNDI CATATG 1 cut(s) 67
Fnu4HI GCNGC 2 cut(s) 24, 106
FokI GGATG 1 cut(s) 293
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 2 cut(s) 24, 106
GluI GCNGC 2 cut(s) 24, 106
HaeIII GGCC 1 cut(s) 14
HapII CCGG 1 cut(s) 335
HgaI GACGC 1 cut(s) 128
HindIII AAGCTT 1 cut(s) 170
HinfI GANTC 1 cut(s) 221
HpaII CCGG 1 cut(s) 335
Hpy188I TCNGA 3 cut(s) 89, 250, 361
HpyAV CCTTC 2 cut(s) 166, 308
HpyCH4V TGCA 2 cut(s) 108, 260
HpyF10VI GCNNNNNNNGC 1 cut(s) 20
HpyF3I CTNAG 3 cut(s) 9, 168, 249
Kzo9I GATC 2 cut(s) 294, 352
LmnI GCTCC 1 cut(s) 199
LpnPI CCDG 3 cut(s) 211, 238, 348
Lsp1109I GCAGC 2 cut(s) 35, 92
LweI GCATC 3 cut(s) 154, 269, 320
MalI GATC 2 cut(s) 296, 354
MboI GATC 2 cut(s) 294, 352
MboII GAAGA 7 cut(s) 21, 27, 30, 33, 36, 197, 235
MflI RGATCY 2 cut(s) 294, 352
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 3 cut(s) 55, 109, 150
MlyI GAGTC 1 cut(s) 230
MnlI CCTC 6 cut(s) 43, 83, 88, 173, 211, 367
Mph1103I ATGCAT 1 cut(s) 262
MseI TTAA 1 cut(s) 291
MspA1I CMGCKG 1 cut(s) 197
MspI CCGG 1 cut(s) 335
MspR9I CCNGG 1 cut(s) 226
MvaI CCWGG 1 cut(s) 226
MwoI GCNNNNNNNGC 1 cut(s) 20
NdeI CATATG 1 cut(s) 67
NdeII GATC 2 cut(s) 294, 352
NlaIV GGNNCC 1 cut(s) 354
NsiI ATGCAT 1 cut(s) 262
PinAI ACCGGT 1 cut(s) 334
PkrI GCNGC 2 cut(s) 25, 107
PleI GAGTC 1 cut(s) 229
PpsI GAGTC 1 cut(s) 229
Psp124BI GAGCTC 1 cut(s) 8
Psp6I CCWGG 1 cut(s) 224
PspGI CCWGG 1 cut(s) 224
PspN4I GGNNCC 1 cut(s) 354
PsuI RGATCY 2 cut(s) 294, 352
RsaI GTAC 1 cut(s) 128
RsaNI GTAC 1 cut(s) 127
SacI GAGCTC 1 cut(s) 8
SaqAI TTAA 1 cut(s) 291
SatI GCNGC 2 cut(s) 24, 106
Sau3AI GATC 2 cut(s) 294, 352
SchI GAGTC 1 cut(s) 230
ScrFI CCNGG 1 cut(s) 226
SduI GDGCHC 1 cut(s) 8
SetI ASST 7 cut(s) 8, 28, 158, 174, 204, 272, 351
SfaNI GCATC 3 cut(s) 154, 269, 320
Sse9I AATT 3 cut(s) 55, 109, 150
SsiI CCGC 1 cut(s) 197
SstI GAGCTC 1 cut(s) 8
StyD4I CCNGG 1 cut(s) 224
TaqI TCGA 1 cut(s) 216
TasI AATT 3 cut(s) 55, 109, 150
TatI WGTACW 1 cut(s) 126
Tru1I TTAA 1 cut(s) 291
Tru9I TTAA 1 cut(s) 291
TseI GCWGC 2 cut(s) 23, 105
TspDTI ATGAA 3 cut(s) 48, 148, 297
Zsp2I ATGCAT 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.