Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000014.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 951

Gene Structure 951 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 289 bp

atggccatggctgcactcagacgagaagggaggcgtttcgccatctcccccaatccaatcgccgccgtccgatcctccatcttccccgccgaggagcaggcccctctgggagtacgctcaatttcaactcaaatcgtgagaaaccggatgaagagtgttaagagtatccaaaaaattacaaaggcaatgaagatggttgcagcctcaaagctgcgagcaattcaatccaaagctgaaaattctcgtggcctgtggcagcctttcacagcacttcttggcgacaccccca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005753 GO:0008270 GO:0009507 GO:0009536 GO:0016020 GO:0016469 GO:0019866 GO:0030312 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045259 GO:0046872 GO:0046914 GO:0070013 GO:0071944 GO:0098796 GO:0098798 GO:0098800

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko05010 ko05012 ko05016 map00190 map01100 map04714 map05010 map05012 map05016

Pfam Domains

Protein Families

ATP-synt

Protein Analysis

96

Amino Acids

10.54

Weight (kDa)

11.84

Isoelectric Point (pI)

66.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt	PF00231	43 - 93	4.4e-14	ATP synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	63, 87
AclWI	GGATC	1 cut(s)	66
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	238
AfaI	GTAC	1 cut(s)	114
AfiI	CCNNNNNNNGG	1 cut(s)	91
AgsI	TTSAA	2 cut(s)	126, 224
AluBI	AGCT	2 cut(s)	211, 233
AluI	AGCT	2 cut(s)	211, 233
AlwI	GGATC	1 cut(s)	66
AoxI	GGCC	3 cut(s)	3, 99, 247
ApeKI	GCWGC	4 cut(s)	11, 200, 211, 256
ApoI	RAATTY	1 cut(s)	238
AspS9I	GGNCC	1 cut(s)	100
BalI	TGGCCA	1 cut(s)	5
BauI	CACGAG	1 cut(s)	243
BbvI	GCAGC	3 cut(s)	198, 212, 268
BccI	CCATC	3 cut(s)	50, 86, 187
BceAI	ACGGC	1 cut(s)	50
BciVI	GTATCC	1 cut(s)	176
BfuI	GTATCC	1 cut(s)	176
BisI	GCNGC	5 cut(s)	12, 63, 201, 212, 257
BlsI	GCNGC	5 cut(s)	13, 64, 202, 213, 258
BmgT120I	GGNCC	1 cut(s)	100
BmiI	GGNNCC	1 cut(s)	102
BsaJI	CCNNGG	2 cut(s)	6, 90
BsaWI	WCCGGW	1 cut(s)	144
Bsc4I	CCNNNNNNNGG	1 cut(s)	91
Bse3DI	GCAATG	1 cut(s)	192
BseDI	CCNNGG	2 cut(s)	6, 90
BseGI	GGATG	1 cut(s)	153
BseLI	CCNNNNNNNGG	1 cut(s)	91
BseMI	GCAATG	1 cut(s)	192
BseMII	CTCAG	1 cut(s)	31
BseRI	GAGGAG	1 cut(s)	107
BseXI	GCAGC	3 cut(s)	198, 212, 268
BshFI	GGCC	3 cut(s)	5, 101, 249
BsiSI	CCGG	1 cut(s)	145
BslI	CCNNNNNNNGG	1 cut(s)	91
BsnI	GGCC	3 cut(s)	5, 101, 249
Bsp143I	GATC	1 cut(s)	71
Bsp19I	CCATGG	1 cut(s)	6
BspACI	CCGC	2 cut(s)	63, 87
BspANI	GGCC	3 cut(s)	5, 101, 249
BspCNI	CTCAG	1 cut(s)	30
BspLI	GGNNCC	1 cut(s)	102
BspPI	GGATC	1 cut(s)	66
BsrDI	GCAATG	1 cut(s)	192
BssECI	CCNNGG	2 cut(s)	6, 90
BssMI	GATC	1 cut(s)	71
BssSI	CACGAG	1 cut(s)	243
BssT1I	CCWWGG	1 cut(s)	6
Bst2BI	CACGAG	1 cut(s)	243
Bst6I	CTCTTC	1 cut(s)	146
BstC8I	GCNNGC	2 cut(s)	99, 216
BstDEI	CTNAG	1 cut(s)	17
BstDSI	CCRYGG	1 cut(s)	6
BstF5I	GGATG	1 cut(s)	153
BstKTI	GATC	1 cut(s)	74
BstMBI	GATC	1 cut(s)	71
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstV1I	GCAGC	3 cut(s)	198, 212, 268
BsuI	GTATCC	1 cut(s)	176
BsuRI	GGCC	3 cut(s)	5, 101, 249
BtgI	CCRYGG	1 cut(s)	6
BtsCI	GGATG	1 cut(s)	153
Cac8I	GCNNGC	2 cut(s)	99, 216
Cfr13I	GGNCC	1 cut(s)	100
Csp6I	GTAC	1 cut(s)	113
CviAII	CATG	1 cut(s)	7
CviJI	RGCY	8 cut(s)	5, 11, 101, 203, 211, 233, 249, 259
CviKI_1	RGCY	8 cut(s)	5, 11, 101, 203, 211, 233, 249, 259
CviQI	GTAC	1 cut(s)	113
DdeI	CTNAG	1 cut(s)	17
DpnI	GATC	1 cut(s)	73
DpnII	GATC	1 cut(s)	71
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	146
EarI	CTCTTC	1 cut(s)	146
Eco130I	CCWWGG	1 cut(s)	6
EcoO109I	RGGNCCY	1 cut(s)	100
EcoT14I	CCWWGG	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	6
FaeI	CATG	1 cut(s)	10
FaiI	YATR	1 cut(s)	8
FatI	CATG	1 cut(s)	6
FauI	CCCGC	1 cut(s)	94
Fnu4HI	GCNGC	5 cut(s)	12, 63, 201, 212, 257
FokI	GGATG	1 cut(s)	160
Fsp4HI	GCNGC	5 cut(s)	12, 63, 201, 212, 257
GluI	GCNGC	5 cut(s)	12, 63, 201, 212, 257
HaeIII	GGCC	3 cut(s)	5, 101, 249
HapII	CCGG	1 cut(s)	145
Hin1II	CATG	1 cut(s)	10
HpaII	CCGG	1 cut(s)	145
Hpy188I	TCNGA	2 cut(s)	20, 71
Hpy188III	TCNNGA	1 cut(s)	136
HpyAV	CCTTC	1 cut(s)	20
HpyCH4V	TGCA	2 cut(s)	14, 200
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	1 cut(s)	17
Hsp92II	CATG	1 cut(s)	10
Kzo9I	GATC	1 cut(s)	71
LmnI	GCTCC	1 cut(s)	94
LpnPI	CCDG	4 cut(s)	83, 92, 158, 263
Lsp1109I	GCAGC	3 cut(s)	198, 212, 268
MalI	GATC	1 cut(s)	73
MboI	GATC	1 cut(s)	71
MboII	GAAGA	3 cut(s)	73, 163, 202
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	120, 174, 219, 238
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	5 cut(s)	24, 85, 85, 114, 214
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	159
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	145
MwoI	GCNNNNNNNGC	1 cut(s)	11
NcoI	CCATGG	1 cut(s)	6
NdeII	GATC	1 cut(s)	71
NlaIII	CATG	1 cut(s)	10
NlaIV	GGNNCC	1 cut(s)	102
NmeAIII	GCCGAG	1 cut(s)	115
PkrI	GCNGC	5 cut(s)	13, 64, 202, 213, 258
PspN4I	GGNNCC	1 cut(s)	102
PspPI	GGNCC	1 cut(s)	100
RsaI	GTAC	1 cut(s)	114
RsaNI	GTAC	1 cut(s)	113
SaqAI	TTAA	1 cut(s)	159
SatI	GCNGC	5 cut(s)	12, 63, 201, 212, 257
Sau3AI	GATC	1 cut(s)	71
Sau96I	GGNCC	1 cut(s)	100
SetI	ASST	2 cut(s)	213, 235
Sse9I	AATT	4 cut(s)	120, 174, 219, 238
SsiI	CCGC	2 cut(s)	63, 87
StyI	CCWWGG	1 cut(s)	6
TasI	AATT	4 cut(s)	120, 174, 219, 238
TauI	GCSGC	1 cut(s)	65
Tru1I	TTAA	1 cut(s)	159
Tru9I	TTAA	1 cut(s)	159
TseI	GCWGC	4 cut(s)	11, 200, 211, 256
TspDTI	ATGAA	2 cut(s)	164, 203
XapI	RAATTY	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.