Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000014.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

186134 .. 189355

Gene Structure 3222 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

atgccggacagccgaaacaggccggaaaccggtcgaaccgccgctgtcggcgccaacagaagtggtagccggaggtgcggtacggctgaaccgaaccgtatggacattttcggctcgcacaagaagaagagtcagaagaagaaagcaggagcgagaaaaatggcgacggcgaacaaagtgaaagacgtgtctcctcacgagtttgtcaaggcctacgcggctcatcttaaacgatccggcaagattgagcttcctgagtggacggatattgtgaagactgctacatttaaggagctggctccttatgaccctgattggtattatatcagagctgcatctatggcaaggaaaatctacttgaggggtggtcttggtgttggtgccttccgtaggatctatggaggaagcaagaggaacggcagccgcccaccgcacttctgtaagagcagtggtggtattgctcgtcacatccttcagcaattggagaagctgaagattgttgacattgaccccaaagggggaaggaaaatcacacccagtggccagcgggatttggaccaagttgctggacggatcgtcgttgcaatctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005844 GO:0005911 GO:0006996 GO:0008150 GO:0009506 GO:0009987 GO:0015935 GO:0016020 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S19e

Protein Analysis

196

Amino Acids

21.66

Weight (kDa)

10.5

Isoelectric Point (pI)

49.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S19e	PF01090	59 - 193	4.2e-58	Ribosomal protein S19e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	50, 380
AccII	CGCG	1 cut(s)	218
AciI	CCGC	7 cut(s)	39, 42, 78, 218, 424, 431, 547
AclWI	GGATC	3 cut(s)	228, 401, 581
AcoI	YGGCCR	1 cut(s)	541
AcuI	CTGAAG	2 cut(s)	458, 512
AcyI	GRCGYC	1 cut(s)	51
AdeI	CACNNNGTG	1 cut(s)	539
AfaI	GTAC	1 cut(s)	82
AfiI	CCNNNNNNNGG	4 cut(s)	29, 390, 517, 518
AflIII	ACRYGT	1 cut(s)	186
AgeI	ACCGGT	1 cut(s)	29
AhdI	GACNNNNNGTC	1 cut(s)	575
AjiI	CACGTC	1 cut(s)	187
AluBI	AGCT	4 cut(s)	250, 295, 332, 490
AluI	AGCT	4 cut(s)	250, 295, 332, 490
Alw26I	GTCTC	1 cut(s)	195
AlwI	GGATC	3 cut(s)	228, 401, 581
AoxI	GGCC	3 cut(s)	20, 210, 541
ApeKI	GCWGC	2 cut(s)	332, 420
AsiGI	ACCGGT	1 cut(s)	29
AspLEI	GCGC	1 cut(s)	53
AspS9I	GGNCC	1 cut(s)	556
AvaII	GGWCC	1 cut(s)	556
BalI	TGGCCA	1 cut(s)	543
BanI	GGYRCC	2 cut(s)	50, 380
BauI	CACGAG	1 cut(s)	197
BbsI	GAAGAC	1 cut(s)	281
BbvI	GCAGC	2 cut(s)	319, 432
BceAI	ACGGC	3 cut(s)	99, 183, 433
BcoDI	GTCTC	1 cut(s)	195
BfoI	RGCGCY	1 cut(s)	54
BglI	GCCNNNNNGGC	1 cut(s)	218
BisI	GCNGC	5 cut(s)	42, 219, 333, 421, 424
BlsI	GCNGC	5 cut(s)	43, 220, 334, 422, 425
Bme18I	GGWCC	1 cut(s)	556
BmeRI	GACNNNNNGTC	1 cut(s)	575
BmgBI	CACGTC	1 cut(s)	187
BmgT120I	GGNCC	1 cut(s)	556
BmiI	GGNNCC	3 cut(s)	52, 300, 382
BmrI	ACTGGG	1 cut(s)	531
BmsI	GCATC	1 cut(s)	344
BmuI	ACTGGG	1 cut(s)	531
BpiI	GAAGAC	1 cut(s)	281
BpuEI	CTTGAG	1 cut(s)	379
BsaHI	GRCGYC	1 cut(s)	51
BsaWI	WCCGGW	1 cut(s)	29
BsaXI	ACNNNNNCTCC	2 cut(s)	64, 94
Bsc4I	CCNNNNNNNGG	4 cut(s)	29, 390, 517, 518
Bse118I	RCCGGY	1 cut(s)	29
Bse1I	ACTGG	1 cut(s)	537
BseGI	GGATG	1 cut(s)	468
BseLI	CCNNNNNNNGG	4 cut(s)	29, 390, 517, 518
BseMII	CTCAG	1 cut(s)	246
BseNI	ACTGG	1 cut(s)	537
BseRI	GAGGAG	1 cut(s)	183
BseXI	GCAGC	2 cut(s)	319, 432
Bsh1236I	CGCG	1 cut(s)	218
Bsh1285I	CGRYCG	1 cut(s)	34
BshFI	GGCC	3 cut(s)	22, 212, 543
BshNI	GGYRCC	2 cut(s)	50, 380
BshTI	ACCGGT	1 cut(s)	29
BsiEI	CGRYCG	1 cut(s)	34
BsiSI	CCGG	5 cut(s)	5, 23, 30, 70, 237
BslI	CCNNNNNNNGG	4 cut(s)	29, 390, 517, 518
BsmAI	GTCTC	1 cut(s)	195
BsnI	GGCC	3 cut(s)	22, 212, 543
Bsp143I	GATC	3 cut(s)	233, 393, 573
BspACI	CCGC	7 cut(s)	39, 42, 78, 218, 424, 431, 547
BspANI	GGCC	3 cut(s)	22, 212, 543
BspCNI	CTCAG	1 cut(s)	247
BspFNI	CGCG	1 cut(s)	218
BspLI	GGNNCC	3 cut(s)	52, 300, 382
BspPI	GGATC	3 cut(s)	228, 401, 581
BspT107I	GGYRCC	2 cut(s)	50, 380
BsrFI	RCCGGY	1 cut(s)	29
BsrI	ACTGG	1 cut(s)	537
BssAI	RCCGGY	1 cut(s)	29
BssMI	GATC	3 cut(s)	233, 393, 573
BssNI	GRCGYC	1 cut(s)	51
BssSI	CACGAG	1 cut(s)	197
Bst2BI	CACGAG	1 cut(s)	197
Bst4CI	ACNGT	1 cut(s)	98
Bst6I	CTCTTC	1 cut(s)	122
BstACI	GRCGYC	1 cut(s)	51
BstC8I	GCNNGC	3 cut(s)	116, 297, 545
BstDEI	CTNAG	1 cut(s)	255
BstENI	CCTNNNNNAGG	1 cut(s)	388
BstF5I	GGATG	1 cut(s)	468
BstFNI	CGCG	1 cut(s)	218
BstH2I	RGCGCY	1 cut(s)	54
BstHHI	GCGC	1 cut(s)	53
BstKTI	GATC	3 cut(s)	236, 396, 576
BstMAI	GTCTC	1 cut(s)	195
BstMBI	GATC	3 cut(s)	233, 393, 573
BstMCI	CGRYCG	1 cut(s)	34
BstMWI	GCNNNNNNNGC	4 cut(s)	50, 75, 218, 341
BstUI	CGCG	1 cut(s)	218
BstV1I	GCAGC	2 cut(s)	319, 432
BstV2I	GAAGAC	1 cut(s)	281
BstX2I	RGATCY	1 cut(s)	393
BstXI	CCANNNNNNTGG	1 cut(s)	566
BstYI	RGATCY	1 cut(s)	393
BsuRI	GGCC	3 cut(s)	22, 212, 543
BtrI	CACGTC	1 cut(s)	187
BtsCI	GGATG	1 cut(s)	468
BtsI	GCAGTG	1 cut(s)	454
BtsIMutI	CAGTG	2 cut(s)	454, 544
Cac8I	GCNNGC	3 cut(s)	116, 297, 545
CfoI	GCGC	1 cut(s)	53
Cfr10I	RCCGGY	1 cut(s)	29
Cfr13I	GGNCC	1 cut(s)	556
Csp6I	GTAC	1 cut(s)	81
CspAI	ACCGGT	1 cut(s)	29
CspCI	CAANNNNNGTGG	2 cut(s)	43, 78
CviQI	GTAC	1 cut(s)	81
DdeI	CTNAG	1 cut(s)	255
DinI	GGCGCC	1 cut(s)	52
DpnI	GATC	3 cut(s)	235, 395, 575
DpnII	GATC	3 cut(s)	233, 393, 573
DraIII	CACNNNGTG	1 cut(s)	539
DriI	GACNNNNNGTC	1 cut(s)	575
EaeI	YGGCCR	1 cut(s)	541
Eam1104I	CTCTTC	1 cut(s)	122
Eam1105I	GACNNNNNGTC	1 cut(s)	575
EarI	CTCTTC	1 cut(s)	122
Eco147I	AGGCCT	1 cut(s)	212
Eco47I	GGWCC	1 cut(s)	556
Eco57I	CTGAAG	2 cut(s)	458, 512
EcoNI	CCTNNNNNAGG	1 cut(s)	388
EgeI	GGCGCC	1 cut(s)	52
EheI	GGCGCC	1 cut(s)	52
FaiI	YATR	5 cut(s)	101, 306, 324, 341, 399
FauI	CCCGC	1 cut(s)	540
Fnu4HI	GCNGC	5 cut(s)	42, 219, 333, 421, 424
FokI	GGATG	1 cut(s)	455
Fsp4HI	GCNGC	5 cut(s)	42, 219, 333, 421, 424
GlaI	GCGC	1 cut(s)	52
GluI	GCNGC	5 cut(s)	42, 219, 333, 421, 424
HaeII	RGCGCY	1 cut(s)	54
HaeIII	GGCC	3 cut(s)	22, 212, 543
HapII	CCGG	5 cut(s)	5, 23, 30, 70, 237
HhaI	GCGC	1 cut(s)	53
Hin1I	GRCGYC	1 cut(s)	51
Hin6I	GCGC	1 cut(s)	51
HinP1I	GCGC	1 cut(s)	51
HincII	GTYRAC	1 cut(s)	502
HindII	GTYRAC	1 cut(s)	502
HinfI	GANTC	1 cut(s)	130
HpaII	CCGG	5 cut(s)	5, 23, 30, 70, 237
Hpy166II	GTNNAC	2 cut(s)	261, 502
Hpy188I	TCNGA	3 cut(s)	135, 329, 590
Hpy188III	TCNNGA	2 cut(s)	197, 254
Hpy8I	GTNNAC	2 cut(s)	261, 502
Hpy99I	CGWCG	2 cut(s)	169, 581
HpyAV	CCTTC	3 cut(s)	394, 482, 516
HpyCH4III	ACNGT	1 cut(s)	98
HpyCH4IV	ACGT	1 cut(s)	186
HpyCH4V	TGCA	2 cut(s)	335, 584
HpyF10VI	GCNNNNNNNGC	4 cut(s)	50, 75, 218, 341
HpyF3I	CTNAG	1 cut(s)	255
HpySE526I	ACGT	1 cut(s)	186
Hsp92I	GRCGYC	1 cut(s)	51
HspAI	GCGC	1 cut(s)	51
KasI	GGCGCC	1 cut(s)	50
Kzo9I	GATC	3 cut(s)	233, 393, 573
LmnI	GCTCC	3 cut(s)	149, 292, 304
Lsp1109I	GCAGC	2 cut(s)	319, 432
LweI	GCATC	1 cut(s)	344
MaeII	ACGT	1 cut(s)	186
MaeIII	GTNAC	1 cut(s)	464
MalI	GATC	3 cut(s)	235, 395, 575
MboI	GATC	3 cut(s)	233, 393, 573
MboII	GAAGA	6 cut(s)	136, 139, 148, 151, 286, 505
MfeI	CAATTG	1 cut(s)	479
MflI	RGATCY	1 cut(s)	393
MlsI	TGGCCA	1 cut(s)	543
MluCI	AATT	1 cut(s)	479
MluNI	TGGCCA	1 cut(s)	543
Mly113I	GGCGCC	1 cut(s)	51
MlyI	GAGTC	1 cut(s)	139
MnlI	CCTC	5 cut(s)	66, 204, 354, 395, 405
Mox20I	TGGCCA	1 cut(s)	543
MscI	TGGCCA	1 cut(s)	543
MseI	TTAA	2 cut(s)	228, 288
Msp20I	TGGCCA	1 cut(s)	543
MspA1I	CMGCKG	2 cut(s)	44, 547
MspI	CCGG	5 cut(s)	5, 23, 30, 70, 237
MunI	CAATTG	1 cut(s)	479
MvnI	CGCG	1 cut(s)	218
MwoI	GCNNNNNNNGC	4 cut(s)	50, 75, 218, 341
NarI	GGCGCC	1 cut(s)	51
NdeII	GATC	3 cut(s)	233, 393, 573
NlaIV	GGNNCC	3 cut(s)	52, 300, 382
NmuCI	GTSAC	1 cut(s)	464
PceI	AGGCCT	1 cut(s)	212
PcsI	WCGNNNNNNNCGW	1 cut(s)	89
PinAI	ACCGGT	1 cut(s)	29
PkrI	GCNGC	5 cut(s)	43, 220, 334, 422, 425
PleI	GAGTC	1 cut(s)	138
PluTI	GGCGCC	1 cut(s)	54
PpsI	GAGTC	1 cut(s)	138
PspN4I	GGNNCC	3 cut(s)	52, 300, 382
PspPI	GGNCC	1 cut(s)	556
PsuI	RGATCY	1 cut(s)	393
RsaI	GTAC	1 cut(s)	82
RsaNI	GTAC	1 cut(s)	81
SaqAI	TTAA	2 cut(s)	228, 288
SatI	GCNGC	5 cut(s)	42, 219, 333, 421, 424
Sau3AI	GATC	3 cut(s)	233, 393, 573
Sau96I	GGNCC	1 cut(s)	556
SchI	GAGTC	1 cut(s)	139
SetI	ASST	6 cut(s)	77, 189, 252, 297, 334, 492
SfaNI	GCATC	1 cut(s)	344
SfoI	GGCGCC	1 cut(s)	52
SinI	GGWCC	1 cut(s)	556
SmlI	CTYRAG	1 cut(s)	358
SmoI	CTYRAG	1 cut(s)	358
Sse9I	AATT	1 cut(s)	479
SseBI	AGGCCT	1 cut(s)	212
SsiI	CCGC	7 cut(s)	39, 42, 78, 218, 424, 431, 547
SspDI	GGCGCC	1 cut(s)	50
StuI	AGGCCT	1 cut(s)	212
TaaI	ACNGT	1 cut(s)	98
TaiI	ACGT	1 cut(s)	189
TaqI	TCGA	1 cut(s)	34
TasI	AATT	1 cut(s)	479
TauI	GCSGC	3 cut(s)	44, 221, 426
Tru1I	TTAA	2 cut(s)	228, 288
Tru9I	TTAA	2 cut(s)	228, 288
TscAI	CASTG	2 cut(s)	454, 544
TseFI	GTSAC	1 cut(s)	464
TseI	GCWGC	2 cut(s)	332, 420
Tsp45I	GTSAC	1 cut(s)	464
TspGWI	ACGGA	3 cut(s)	278, 377, 586
TspRI	CASTG	2 cut(s)	454, 544
VpaK11BI	GGWCC	1 cut(s)	556
XagI	CCTNNNNNAGG	1 cut(s)	388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.