Rmu_sc0000029.1_g000042

UDP-glucuronic acid decarboxylase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000029.1
N/A
Physical Location & Seq
Reverse (-)
186631 .. 187076
446 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 339 bp
atgaatcacatgaggggcgaagagatcccaaccaccctagcctcatcatactccaccaaagcctttaagcaacccaaatccatcaactacatcttcaaagagcaacacctcctcttcatcctagacctaatcaacaccgccaccttctctactgacctcccccacaacgccgacagggtcctcgccagcctcggcaagcgcaggctcaggatcatcgtcaccagtggcccagtcatcattgggtctcacctcgttgataagttactctctagagagaatgatgtgattgtcatcgacaatttgttcaccgagaggaaggagaacgtggtgcaccattga

Protein Analysis

112

Amino Acids

12.75

Weight (kDa)

9.1

Isoelectric Point (pI)

30.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 138
AclWI GGATC 2 cut(s) 19, 218
AgsI TTSAA 1 cut(s) 97
Alw21I GWGCWC 1 cut(s) 333
Alw26I GTCTC 1 cut(s) 249
Alw44I GTGCAC 1 cut(s) 329
AlwI GGATC 2 cut(s) 19, 218
AoxI GGCC 1 cut(s) 226
ApaLI GTGCAC 1 cut(s) 329
AspLEI GCGC 1 cut(s) 201
AspS9I GGNCC 2 cut(s) 178, 227
AsuHPI GGTGA 3 cut(s) 211, 239, 298
AvaII GGWCC 1 cut(s) 178
BaeGI GKGCMC 1 cut(s) 333
Bbv12I GWGCWC 1 cut(s) 333
BccI CCATC 1 cut(s) 89
BcoDI GTCTC 1 cut(s) 249
BfaI CTAG 3 cut(s) 38, 122, 270
Bme18I GGWCC 1 cut(s) 178
BmgT120I GGNCC 2 cut(s) 178, 227
BmiI GGNNCC 1 cut(s) 179
BmrI ACTGGG 1 cut(s) 224
BmuI ACTGGG 1 cut(s) 224
Bpu10I CCTNAGC 1 cut(s) 206
BsaBI GATNNNNATC 1 cut(s) 290
BsaI GGTCTC 1 cut(s) 249
BsaJI CCNNGG 1 cut(s) 190
Bse1I ACTGG 2 cut(s) 222, 230
Bse8I GATNNNNATC 1 cut(s) 290
BseDI CCNNGG 1 cut(s) 190
BseGI GGATG 1 cut(s) 117
BseJI GATNNNNATC 1 cut(s) 290
BseMII CTCAG 1 cut(s) 220
BseNI ACTGG 2 cut(s) 222, 230
BseRI GAGGAG 1 cut(s) 101
BseSI GKGCMC 1 cut(s) 333
BshFI GGCC 1 cut(s) 228
BsiHKAI GWGCWC 1 cut(s) 333
BsmAI GTCTC 1 cut(s) 249
BsnI GGCC 1 cut(s) 228
Bso31I GGTCTC 1 cut(s) 249
Bsp1286I GDGCHC 1 cut(s) 333
Bsp143I GATC 2 cut(s) 24, 210
BspACI CCGC 1 cut(s) 138
BspANI GGCC 1 cut(s) 228
BspCNI CTCAG 1 cut(s) 219
BspLI GGNNCC 1 cut(s) 179
BspPI GGATC 2 cut(s) 19, 218
BspTNI GGTCTC 1 cut(s) 249
BsrI ACTGG 2 cut(s) 222, 230
BssECI CCNNGG 1 cut(s) 190
BssMI GATC 2 cut(s) 24, 210
Bst6I CTCTTC 2 cut(s) 15, 119
BstC8I GCNNGC 3 cut(s) 187, 197, 203
BstDEI CTNAG 1 cut(s) 206
BstF5I GGATG 1 cut(s) 117
BstHHI GCGC 1 cut(s) 201
BstKTI GATC 2 cut(s) 27, 213
BstMAI GTCTC 1 cut(s) 249
BstMBI GATC 2 cut(s) 24, 210
BstSLI GKGCMC 1 cut(s) 333
BstX2I RGATCY 1 cut(s) 24
BstYI RGATCY 1 cut(s) 24
BsuRI GGCC 1 cut(s) 228
BtsCI GGATG 1 cut(s) 117
BtsIMutI CAGTG 1 cut(s) 229
Cac8I GCNNGC 3 cut(s) 187, 197, 203
CfoI GCGC 1 cut(s) 201
Cfr13I GGNCC 2 cut(s) 178, 227
CviAII CATG 1 cut(s) 10
CviJI RGCY 5 cut(s) 41, 62, 189, 205, 228
CviKI_1 RGCY 5 cut(s) 41, 62, 189, 205, 228
DdeI CTNAG 1 cut(s) 206
DpnI GATC 2 cut(s) 26, 212
DpnII GATC 2 cut(s) 24, 210
Eam1104I CTCTTC 2 cut(s) 15, 119
EarI CTCTTC 2 cut(s) 15, 119
Eco31I GGTCTC 1 cut(s) 249
Eco47I GGWCC 1 cut(s) 178
EcoO109I RGGNCCY 1 cut(s) 178
FaeI CATG 1 cut(s) 13
FaiI YATR 2 cut(s) 11, 49
FatI CATG 1 cut(s) 9
FokI GGATG 1 cut(s) 104
FspBI CTAG 3 cut(s) 38, 122, 270
GlaI GCGC 1 cut(s) 200
HaeIII GGCC 1 cut(s) 228
HhaI GCGC 1 cut(s) 201
Hin1II CATG 1 cut(s) 13
Hin6I GCGC 1 cut(s) 199
HinP1I GCGC 1 cut(s) 199
HinfI GANTC 1 cut(s) 4
HphI GGTGA 3 cut(s) 211, 239, 298
Hpy166II GTNNAC 2 cut(s) 306, 331
Hpy188III TCNNGA 2 cut(s) 208, 270
Hpy8I GTNNAC 2 cut(s) 306, 331
HpyAV CCTTC 2 cut(s) 154, 310
HpyCH4IV ACGT 1 cut(s) 324
HpyCH4V TGCA 1 cut(s) 331
HpyF3I CTNAG 1 cut(s) 206
HpySE526I ACGT 1 cut(s) 324
Hsp92II CATG 1 cut(s) 13
HspAI GCGC 1 cut(s) 199
Kzo9I GATC 2 cut(s) 24, 210
LpnPI CCDG 6 cut(s) 160, 187, 193, 199, 235, 243
MaeI CTAG 3 cut(s) 38, 122, 270
MaeII ACGT 1 cut(s) 324
MaeIII GTNAC 2 cut(s) 217, 261
MalI GATC 2 cut(s) 26, 212
MboI GATC 2 cut(s) 24, 210
MboII GAAGA 3 cut(s) 32, 85, 106
MflI RGATCY 1 cut(s) 24
MhlI GDGCHC 1 cut(s) 333
MluCI AATT 1 cut(s) 298
MnlI CCTC 9 cut(s) 6, 52, 119, 122, 167, 191, 200, 260, 306
MseI TTAA 1 cut(s) 66
NdeII GATC 2 cut(s) 24, 210
NlaIII CATG 1 cut(s) 13
NlaIV GGNNCC 1 cut(s) 179
NmeAIII GCCGAG 1 cut(s) 171
NmuCI GTSAC 1 cut(s) 217
PfeI GAWTC 1 cut(s) 4
PflFI GACNNNGTC 1 cut(s) 176
PpuMI RGGWCCY 1 cut(s) 178
Psp5II RGGWCCY 1 cut(s) 178
PspN4I GGNNCC 1 cut(s) 179
PspPI GGNCC 2 cut(s) 178, 227
PspPPI RGGWCCY 1 cut(s) 178
PsuI RGATCY 1 cut(s) 24
PsyI GACNNNGTC 1 cut(s) 176
SaqAI TTAA 1 cut(s) 66
Sau3AI GATC 2 cut(s) 24, 210
Sau96I GGNCC 2 cut(s) 178, 227
SduI GDGCHC 1 cut(s) 333
SetI ASST 6 cut(s) 111, 129, 146, 159, 252, 327
SinI GGWCC 1 cut(s) 178
Sse9I AATT 1 cut(s) 298
SsiI CCGC 1 cut(s) 138
SspMI CTAG 3 cut(s) 38, 122, 270
TaiI ACGT 1 cut(s) 327
TaqI TCGA 1 cut(s) 294
TasI AATT 1 cut(s) 298
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 1 cut(s) 66
Tru9I TTAA 1 cut(s) 66
TscAI CASTG 1 cut(s) 229
TseFI GTSAC 1 cut(s) 217
Tsp45I GTSAC 1 cut(s) 217
TspDTI ATGAA 2 cut(s) 17, 106
TspRI CASTG 1 cut(s) 229
Tth111I GACNNNGTC 1 cut(s) 176
VneI GTGCAC 1 cut(s) 329
VpaK11BI GGWCC 1 cut(s) 178
XbaI TCTAGA 1 cut(s) 269
XspI CTAG 3 cut(s) 38, 122, 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.