Rmu_sc0000046.1_g000003

Serine-rich protein-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000046.1
N/A
Physical Location & Seq
Forward (+)
14687 .. 17043
2357 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 939 bp
atgtggctgctgacgtggcaggatgacgtcaacgggcttctgctcttgggtcagtgggtttctgggccgagaccatcttcttctgggccgaaggcttgggccagttgcagtgggcttctccttcctccttttttttttttttccttctgccggacgattcagtccgctggtggtgaaccggtggaatatttgctgcgggcggtttggagcttccggtggccagttcggtatgttttcggcctgttcttggggtggctcctccgattttggattcctgggaaggagggcttcaagatgtgtggcgggggtcgaaaggactctctctcactctctccccccaccgtcgctggaattacgtcggaaatcagactccagaccaccagcttctcgtctccttcgtctgcctttttcaacaaccaccaggaccaccatagccactaccaccacaccgactaccaccaccaccgttccacttcaccgacgcatatcaatctctacacctccagtgctctgtctccagcttttcgcttctccatcgagcaccattccatctccccaaaccgatccatcaccacttccaagaagaacggcccgatcgcggcgtccaggaagacttgtatgtgctcgccgacgaatcatccaagcttgtttcgctgcagatccgccatgacgaactcgctggttcgaatcagtggagtcgagggggagtggatgaagagagccttcacggctctattcgtccttctacgcaccagcagaggcagagaacccagtttctctatttttccgatcttagattctggcgatccggcaatcggattcaagattcctgtgaccggactccggattccagtcattagttgccggaatcaggtcaccggagtccagtcacctgccgccggagaccgcggccggccactggtcaccgaagcacagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

312

Amino Acids

34.67

Weight (kDa)

10.04

Isoelectric Point (pI)

57.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 901
AasI GACNNNNNNGTC 1 cut(s) 160
AatII GACGTC 1 cut(s) 30
Acc36I ACCTGC 1 cut(s) 901
AccII CGCG 2 cut(s) 599, 909
AccIII TCCGGA 1 cut(s) 843
AciI CCGC 9 cut(s) 165, 196, 200, 303, 599, 663, 897, 907, 909
AclWI GGATC 3 cut(s) 558, 654, 800
AcoI YGGCCR 3 cut(s) 218, 910, 914
AcyI GRCGYC 2 cut(s) 27, 602
AfiI CCNNNNNNNGG 9 cut(s) 150, 247, 598, 815, 836, 843, 871, 899, 919
AgeI ACCGGT 1 cut(s) 178
AgsI TTSAA 3 cut(s) 292, 412, 823
AjiI CACGTC 1 cut(s) 15
AjnI CCWGG 3 cut(s) 274, 420, 605
AluBI AGCT 4 cut(s) 210, 384, 521, 645
AluI AGCT 4 cut(s) 210, 384, 521, 645
Alw21I GWGCWC 3 cut(s) 511, 543, 626
Alw26I GTCTC 4 cut(s) 64, 396, 519, 897
AlwI GGATC 3 cut(s) 558, 654, 800
Aor13HI TCCGGA 1 cut(s) 843
AoxI GGCC 8 cut(s) 65, 86, 99, 218, 238, 589, 910, 914
ApeKI GCWGC 3 cut(s) 7, 193, 654
AsiGI ACCGGT 1 cut(s) 178
AspS9I GGNCC 5 cut(s) 65, 86, 99, 424, 590
AsuHPI GGTGA 6 cut(s) 185, 468, 562, 868, 882, 916
AsuII TTCGAA 1 cut(s) 685
AvaII GGWCC 1 cut(s) 424
BalI TGGCCA 1 cut(s) 220
BbsI GAAGAC 1 cut(s) 617
Bbv12I GWGCWC 3 cut(s) 511, 543, 626
BbvI GCAGC 2 cut(s) 180, 641
BccI CCATC 4 cut(s) 82, 542, 557, 575
BceAI ACGGC 2 cut(s) 604, 744
BciT130I CCWGG 3 cut(s) 276, 422, 607
BcoDI GTCTC 4 cut(s) 64, 396, 519, 897
BfmI CTRYAG 1 cut(s) 655
BfuAI ACCTGC 1 cut(s) 901
BglI GCCNNNNNGGC 1 cut(s) 728
BisI GCNGC 6 cut(s) 8, 194, 600, 655, 897, 910
BlsI GCNGC 6 cut(s) 9, 195, 601, 656, 898, 911
Bme1390I CCNGG 3 cut(s) 276, 422, 607
Bme18I GGWCC 1 cut(s) 424
BmgBI CACGTC 1 cut(s) 15
BmgT120I GGNCC 5 cut(s) 65, 86, 99, 424, 590
BmiI GGNNCC 1 cut(s) 257
BmrFI CCNGG 3 cut(s) 276, 422, 607
BmrI ACTGGG 1 cut(s) 765
BmuI ACTGGG 1 cut(s) 765
BpiI GAAGAC 1 cut(s) 617
BpmI CTGGAG 3 cut(s) 356, 487, 501
Bpu14I TTCGAA 1 cut(s) 685
BsaHI GRCGYC 2 cut(s) 27, 602
BsaI GGTCTC 2 cut(s) 64, 897
BsaJI CCNNGG 2 cut(s) 275, 907
BsaWI WCCGGW 5 cut(s) 178, 213, 836, 843, 878
Bsc4I CCNNNNNNNGG 9 cut(s) 150, 247, 598, 815, 836, 843, 871, 899, 919
Bse118I RCCGGY 2 cut(s) 178, 912
Bse1I ACTGG 7 cut(s) 102, 221, 504, 771, 851, 886, 924
BseAI TCCGGA 1 cut(s) 843
BseBI CCWGG 3 cut(s) 276, 422, 607
BseDI CCNNGG 2 cut(s) 275, 907
BseGI GGATG 3 cut(s) 28, 637, 717
BseLI CCNNNNNNNGG 9 cut(s) 150, 247, 598, 815, 836, 843, 871, 899, 919
BseNI ACTGG 7 cut(s) 102, 221, 504, 771, 851, 886, 924
BseRI GAGGAG 1 cut(s) 248
BseX3I CGGCCG 1 cut(s) 910
BseXI GCAGC 2 cut(s) 180, 641
Bsh1236I CGCG 2 cut(s) 599, 909
Bsh1285I CGRYCG 2 cut(s) 597, 913
BshFI GGCC 8 cut(s) 67, 88, 101, 220, 240, 591, 912, 916
BshTI ACCGGT 1 cut(s) 178
BsiEI CGRYCG 2 cut(s) 597, 913
BsiHKAI GWGCWC 3 cut(s) 511, 543, 626
BslI CCNNNNNNNGG 9 cut(s) 150, 247, 598, 815, 836, 843, 871, 899, 919
BsmAI GTCTC 4 cut(s) 64, 396, 519, 897
BsmBI CGTCTC 1 cut(s) 396
BsnI GGCC 8 cut(s) 67, 88, 101, 220, 240, 591, 912, 916
Bso31I GGTCTC 2 cut(s) 64, 897
Bsp119I TTCGAA 1 cut(s) 685
Bsp1286I GDGCHC 3 cut(s) 511, 543, 626
Bsp13I TCCGGA 1 cut(s) 843
Bsp143I GATC 5 cut(s) 563, 594, 659, 789, 805
BspACI CCGC 9 cut(s) 165, 196, 200, 303, 599, 663, 897, 907, 909
BspANI GGCC 8 cut(s) 67, 88, 101, 220, 240, 591, 912, 916
BspEI TCCGGA 1 cut(s) 843
BspFNI CGCG 2 cut(s) 599, 909
BspLI GGNNCC 1 cut(s) 257
BspMAI CTGCAG 1 cut(s) 659
BspMI ACCTGC 1 cut(s) 901
BspPI GGATC 3 cut(s) 558, 654, 800
BspT104I TTCGAA 1 cut(s) 685
BspTNI GGTCTC 2 cut(s) 64, 897
BsrFI RCCGGY 2 cut(s) 178, 912
BsrI ACTGG 7 cut(s) 102, 221, 504, 771, 851, 886, 924
BssAI RCCGGY 2 cut(s) 178, 912
BssECI CCNNGG 2 cut(s) 275, 907
BssMI GATC 5 cut(s) 563, 594, 659, 789, 805
BssNI GRCGYC 2 cut(s) 27, 602
Bst2UI CCWGG 3 cut(s) 276, 422, 607
Bst4CI ACNGT 3 cut(s) 343, 467, 936
Bst6I CTCTTC 1 cut(s) 710
BstACI GRCGYC 2 cut(s) 27, 602
BstBI TTCGAA 1 cut(s) 685
BstC8I GCNNGC 3 cut(s) 198, 626, 914
BstDEI CTNAG 1 cut(s) 793
BstDSI CCRYGG 1 cut(s) 907
BstEII GGTNACC 2 cut(s) 874, 922
BstF5I GGATG 3 cut(s) 28, 637, 717
BstFNI CGCG 2 cut(s) 599, 909
BstKTI GATC 5 cut(s) 566, 597, 662, 792, 808
BstMAI GTCTC 4 cut(s) 64, 396, 519, 897
BstMBI GATC 5 cut(s) 563, 594, 659, 789, 805
BstMCI CGRYCG 2 cut(s) 597, 913
BstMWI GCNNNNNNNGC 3 cut(s) 16, 651, 728
BstNI CCWGG 3 cut(s) 276, 422, 607
BstPI GGTNACC 2 cut(s) 874, 922
BstSCI CCNGG 3 cut(s) 274, 420, 605
BstSFI CTRYAG 1 cut(s) 655
BstUI CGCG 2 cut(s) 599, 909
BstV1I GCAGC 2 cut(s) 180, 641
BstV2I GAAGAC 1 cut(s) 617
BstX2I RGATCY 1 cut(s) 659
BstYI RGATCY 1 cut(s) 659
BstZI CGGCCG 1 cut(s) 910
BsuRI GGCC 8 cut(s) 67, 88, 101, 220, 240, 591, 912, 916
BtgI CCRYGG 1 cut(s) 907
BtrI CACGTC 1 cut(s) 15
BtsCI GGATG 3 cut(s) 28, 637, 717
BtsI GCAGTG 1 cut(s) 115
BtsIMutI CAGTG 5 cut(s) 59, 115, 511, 697, 917
BveI ACCTGC 1 cut(s) 901
Cac8I GCNNGC 3 cut(s) 198, 626, 914
Cfr10I RCCGGY 2 cut(s) 178, 912
Cfr13I GGNCC 5 cut(s) 65, 86, 99, 424, 590
Cfr42I CCGCGG 1 cut(s) 910
CseI GACGC 2 cut(s) 490, 591
CspAI ACCGGT 1 cut(s) 178
CspCI CAANNNNNGTGG 2 cut(s) 280, 315
CviAII CATG 1 cut(s) 667
DdeI CTNAG 1 cut(s) 793
DpnI GATC 5 cut(s) 565, 596, 661, 791, 807
DpnII GATC 5 cut(s) 563, 594, 659, 789, 805
DrdI GACNNNNNNGTC 1 cut(s) 160
DseDI GACNNNNNNGTC 1 cut(s) 160
EaeI YGGCCR 3 cut(s) 218, 910, 914
EagI CGGCCG 1 cut(s) 910
Eam1104I CTCTTC 1 cut(s) 710
EarI CTCTTC 1 cut(s) 710
EciI GGCGGA 1 cut(s) 652
EclXI CGGCCG 1 cut(s) 910
Eco31I GGTCTC 2 cut(s) 64, 897
Eco47I GGWCC 1 cut(s) 424
Eco52I CGGCCG 1 cut(s) 910
Eco91I GGTNACC 2 cut(s) 874, 922
EcoO65I GGTNACC 2 cut(s) 874, 922
EcoRII CCWGG 3 cut(s) 274, 420, 605
Esp3I CGTCTC 1 cut(s) 396
FaeI CATG 1 cut(s) 670
FaiI YATR 5 cut(s) 231, 432, 486, 620, 668
FalI AAGNNNNNCTT 4 cut(s) 272, 304, 707, 739
FatI CATG 1 cut(s) 666
FauI CCCGC 2 cut(s) 189, 296
Fnu4HI GCNGC 6 cut(s) 8, 194, 600, 655, 897, 910
FokI GGATG 3 cut(s) 35, 624, 724
FseI GGCCGGCC 1 cut(s) 916
Fsp4HI GCNGC 6 cut(s) 8, 194, 600, 655, 897, 910
GluI GCNGC 6 cut(s) 8, 194, 600, 655, 897, 910
GsuI CTGGAG 3 cut(s) 356, 487, 501
HaeIII GGCC 8 cut(s) 67, 88, 101, 220, 240, 591, 912, 916
HgaI GACGC 2 cut(s) 490, 591
Hin1I GRCGYC 2 cut(s) 27, 602
Hin1II CATG 1 cut(s) 670
HincII GTYRAC 1 cut(s) 31
HindII GTYRAC 1 cut(s) 31
HindIII AAGCTT 1 cut(s) 643
HphI GGTGA 6 cut(s) 185, 468, 562, 868, 882, 916
Hpy166II GTNNAC 2 cut(s) 31, 176
Hpy188I TCNGA 5 cut(s) 263, 361, 368, 789, 818
Hpy188III TCNNGA 4 cut(s) 292, 373, 823, 844
Hpy8I GTNNAC 2 cut(s) 31, 176
Hpy99I CGWCG 4 cut(s) 347, 361, 484, 634
HpyAV CCTTC 7 cut(s) 85, 131, 154, 274, 405, 733, 752
HpyCH4III ACNGT 3 cut(s) 343, 467, 936
HpyCH4IV ACGT 3 cut(s) 14, 27, 356
HpyCH4V TGCA 2 cut(s) 108, 657
HpyF10VI GCNNNNNNNGC 3 cut(s) 16, 651, 728
HpyF3I CTNAG 1 cut(s) 793
HpySE526I ACGT 3 cut(s) 14, 27, 356
Hsp92I GRCGYC 2 cut(s) 27, 602
Hsp92II CATG 1 cut(s) 670
Kpn2I TCCGGA 1 cut(s) 843
KroI GCCGGC 1 cut(s) 912
KroNI GCCGGC 1 cut(s) 914
KspI CCGCGG 1 cut(s) 910
Kzo9I GATC 5 cut(s) 563, 594, 659, 789, 805
LmnI GCTCC 2 cut(s) 207, 261
Lsp1109I GCAGC 2 cut(s) 180, 641
MaeII ACGT 3 cut(s) 14, 27, 356
MaeIII GTNAC 4 cut(s) 832, 874, 888, 922
MalI GATC 5 cut(s) 565, 596, 661, 791, 807
MboI GATC 5 cut(s) 563, 594, 659, 789, 805
MboII GAAGA 5 cut(s) 69, 72, 595, 622, 727
MflI RGATCY 1 cut(s) 659
MhlI GDGCHC 3 cut(s) 511, 543, 626
MlsI TGGCCA 1 cut(s) 220
MluCI AATT 1 cut(s) 351
MluNI TGGCCA 1 cut(s) 220
MlyI GAGTC 5 cut(s) 311, 363, 705, 834, 891
MmeI TCCRAC 1 cut(s) 339
MnlI CCTC 6 cut(s) 135, 269, 277, 511, 694, 752
Mox20I TGGCCA 1 cut(s) 220
MroI TCCGGA 1 cut(s) 843
MroNI GCCGGC 1 cut(s) 912
MscI TGGCCA 1 cut(s) 220
Msp20I TGGCCA 1 cut(s) 220
MspA1I CMGCKG 2 cut(s) 167, 909
MspR9I CCNGG 3 cut(s) 276, 422, 607
MvaI CCWGG 3 cut(s) 276, 422, 607
MvnI CGCG 2 cut(s) 599, 909
MwoI GCNNNNNNNGC 3 cut(s) 16, 651, 728
NaeI GCCGGC 1 cut(s) 914
NdeII GATC 5 cut(s) 563, 594, 659, 789, 805
NgoMIV GCCGGC 1 cut(s) 912
NlaIII CATG 1 cut(s) 670
NlaIV GGNNCC 1 cut(s) 257
NmeAIII GCCGAG 1 cut(s) 93
NmuCI GTSAC 4 cut(s) 832, 874, 888, 922
NspV TTCGAA 1 cut(s) 685
PaqCI CACCTGC 1 cut(s) 901
PcsI WCGNNNNNNNCGW 1 cut(s) 395
PdiI GCCGGC 1 cut(s) 914
PfeI GAWTC 9 cut(s) 157, 271, 634, 687, 797, 819, 826, 847, 868
PfoI TCCNGGA 1 cut(s) 605
PinAI ACCGGT 1 cut(s) 178
PkrI GCNGC 6 cut(s) 9, 195, 601, 656, 898, 911
Ple19I CGATCG 1 cut(s) 597
PleI GAGTC 5 cut(s) 311, 363, 704, 834, 890
PpsI GAGTC 5 cut(s) 311, 363, 704, 834, 890
Psp6I CCWGG 3 cut(s) 274, 420, 605
PspEI GGTNACC 2 cut(s) 874, 922
PspGI CCWGG 3 cut(s) 274, 420, 605
PspN4I GGNNCC 1 cut(s) 257
PspPI GGNCC 5 cut(s) 65, 86, 99, 424, 590
PstI CTGCAG 1 cut(s) 659
PsuI RGATCY 1 cut(s) 659
PvuI CGATCG 1 cut(s) 597
RigI GGCCGGCC 1 cut(s) 916
SacII CCGCGG 1 cut(s) 910
SatI GCNGC 6 cut(s) 8, 194, 600, 655, 897, 910
Sau3AI GATC 5 cut(s) 563, 594, 659, 789, 805
Sau96I GGNCC 5 cut(s) 65, 86, 99, 424, 590
SchI GAGTC 5 cut(s) 311, 363, 705, 834, 891
ScrFI CCNGG 3 cut(s) 276, 422, 607
SduI GDGCHC 3 cut(s) 511, 543, 626
SfcI CTRYAG 1 cut(s) 655
Sfr303I CCGCGG 1 cut(s) 910
SfuI TTCGAA 1 cut(s) 685
SgrBI CCGCGG 1 cut(s) 910
SinI GGWCC 1 cut(s) 424
Sse9I AATT 1 cut(s) 351
SsiI CCGC 9 cut(s) 165, 196, 200, 303, 599, 663, 897, 907, 909
SspI AATATT 1 cut(s) 188
StyD4I CCNGG 3 cut(s) 274, 420, 605
TaaI ACNGT 3 cut(s) 343, 467, 936
TaiI ACGT 3 cut(s) 17, 30, 359
TaqI TCGA 4 cut(s) 310, 537, 685, 699
TasI AATT 1 cut(s) 351
TauI GCSGC 3 cut(s) 602, 899, 912
TfiI GAWTC 9 cut(s) 157, 271, 634, 687, 797, 819, 826, 847, 868
TscAI CASTG 5 cut(s) 59, 115, 511, 697, 924
TseFI GTSAC 4 cut(s) 832, 874, 888, 922
TseI GCWGC 3 cut(s) 7, 193, 654
Tsp45I GTSAC 4 cut(s) 832, 874, 888, 922
TspDTI ATGAA 1 cut(s) 728
TspRI CASTG 5 cut(s) 59, 115, 511, 697, 924
VpaK11BI GGWCC 1 cut(s) 424
ZraI GACGTC 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.