Rmu_sc0000051.1_g000015

Calcium ion binding

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000051.1
N/A
Physical Location & Seq
Reverse (-)
59924 .. 62731
2808 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 336 bp
atggcatctgctgctgagccgcgtcatatgatgacaaatcttgaggagaagctcattgatgaggaagtggatgagatgatttgcgagactgatgttgatggtgaattggtacgaaagttgggtcgagctagctatttgaggtaccattgtgatagtttcagaaacttggaggaaaagaaaagagatctgtacgattggaacaatgacggcgacttagttgaggttgggttcctagtcatggctgacgacggagctaataggagggtagttattgaactatgttcagtcttcctctccctgaggacacaaactcggccaaatgcattgacgagttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000226 GO:0000902 GO:0000904 GO:0000922 GO:0001654 GO:0001745 GO:0001751 GO:0001754 GO:0002165 GO:0003008 GO:0003674 GO:0005488 GO:0005509 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005813 GO:0005814 GO:0005815 GO:0005819 GO:0005856 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006928 GO:0006935 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007098 GO:0007099 GO:0007154 GO:0007165 GO:0007186 GO:0007275 GO:0007399 GO:0007409 GO:0007411 GO:0007423 GO:0007431 GO:0007435 GO:0007552 GO:0007600 GO:0007602 GO:0007603 GO:0007605 GO:0007606 GO:0007608 GO:0008092 GO:0008150 GO:0008152 GO:0008219 GO:0008277 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009584 GO:0009605 GO:0009628 GO:0009642 GO:0009653 GO:0009791 GO:0009886 GO:0009887 GO:0009966 GO:0009968 GO:0009987 GO:0010623 GO:0010646 GO:0010648 GO:0012501 GO:0015629 GO:0015630 GO:0016028 GO:0016043 GO:0016056 GO:0016059 GO:0016060 GO:0016061 GO:0016062 GO:0016310 GO:0016459 GO:0016461 GO:0017022 GO:0019538 GO:0019725 GO:0022008 GO:0022400 GO:0022402 GO:0022607 GO:0022612 GO:0022898 GO:0023051 GO:0023052 GO:0023057 GO:0023058 GO:0030029 GO:0030030 GO:0030048 GO:0030154 GO:0030182 GO:0030496 GO:0031023 GO:0031175 GO:0031475 GO:0031476 GO:0031489 GO:0032028 GO:0032036 GO:0032101 GO:0032409 GO:0032411 GO:0032412 GO:0032414 GO:0032501 GO:0032502 GO:0032879 GO:0032989 GO:0032990 GO:0032991 GO:0034762 GO:0034764 GO:0034765 GO:0034767 GO:0035070 GO:0035071 GO:0035272 GO:0036211 GO:0036367 GO:0040011 GO:0042051 GO:0042052 GO:0042221 GO:0042330 GO:0042461 GO:0042462 GO:0042592 GO:0042995 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043269 GO:0043270 GO:0043412 GO:0043933 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044450 GO:0044464 GO:0046530 GO:0046716 GO:0046872 GO:0048102 GO:0048468 GO:0048513 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048592 GO:0048666 GO:0048667 GO:0048699 GO:0048707 GO:0048731 GO:0048732 GO:0048749 GO:0048812 GO:0048856 GO:0048858 GO:0048869 GO:0050789 GO:0050794 GO:0050877 GO:0050896 GO:0050954 GO:0051049 GO:0051050 GO:0051276 GO:0051298 GO:0051383 GO:0051606 GO:0051716 GO:0060033 GO:0060249 GO:0061564 GO:0065007 GO:0065008 GO:0065009 GO:0070853 GO:0070854 GO:0070855 GO:0070925 GO:0071214 GO:0071478 GO:0071482 GO:0071704 GO:0071840 GO:0072499 GO:0072686 GO:0090596 GO:0097431 GO:0097485 GO:0098534 GO:0104004 GO:0120025 GO:0120036 GO:0120039 GO:1901564 GO:1904062 GO:1904064 GO:2001257 GO:2001259
Pfam Domains
Protein Families

Protein Analysis

111

Amino Acids

12.79

Weight (kDa)

4.63

Isoelectric Point (pI)

39.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 141
AccB1I GGYRCC 1 cut(s) 141
AccII CGCG 1 cut(s) 22
AciI CCGC 1 cut(s) 20
AcoI YGGCCR 1 cut(s) 314
AfaI GTAC 3 cut(s) 111, 143, 191
AfiI CCNNNNNNNGG 1 cut(s) 238
AgsI TTSAA 1 cut(s) 275
AluBI AGCT 4 cut(s) 52, 128, 132, 254
AluI AGCT 4 cut(s) 52, 128, 132, 254
Alw26I GTCTC 1 cut(s) 80
AoxI GGCC 1 cut(s) 314
ApeKI GCWGC 1 cut(s) 11
ArsI GACNNNNNNTTYG 2 cut(s) 106, 138
Asp718I GGTACC 1 cut(s) 141
AsuHPI GGTGA 1 cut(s) 113
AsuNHI GCTAGC 1 cut(s) 128
AxyI CCTNAGG 1 cut(s) 299
BaeI ACNNNNGTAYC 4 cut(s) 101, 133, 134, 166
BanI GGYRCC 1 cut(s) 141
BbsI GAAGAC 1 cut(s) 280
BccI CCATC 1 cut(s) 92
BceAI ACGGC 1 cut(s) 223
BcoDI GTCTC 1 cut(s) 80
BfaI CTAG 2 cut(s) 129, 233
BglII AGATCT 1 cut(s) 184
BisI GCNGC 2 cut(s) 12, 20
BlpI GCTNAGC 1 cut(s) 15
BlsI GCNGC 2 cut(s) 13, 21
BmiI GGNNCC 2 cut(s) 143, 230
BmsI GCATC 1 cut(s) 14
BmtI GCTAGC 1 cut(s) 132
BpiI GAAGAC 1 cut(s) 280
Bpu1102I GCTNAGC 1 cut(s) 15
BpuEI CTTGAG 1 cut(s) 62
Bsc4I CCNNNNNNNGG 1 cut(s) 238
Bse21I CCTNAGG 1 cut(s) 299
BseGI GGATG 1 cut(s) 76
BseLI CCNNNNNNNGG 1 cut(s) 238
BseMII CTCAG 2 cut(s) 6, 290
BseRI GAGGAG 1 cut(s) 59
Bsh1236I CGCG 1 cut(s) 22
BshFI GGCC 1 cut(s) 316
BshNI GGYRCC 1 cut(s) 141
BslI CCNNNNNNNGG 1 cut(s) 238
BsmAI GTCTC 1 cut(s) 80
BsnI GGCC 1 cut(s) 316
Bsp143I GATC 1 cut(s) 184
Bsp1720I GCTNAGC 1 cut(s) 15
BspACI CCGC 1 cut(s) 20
BspANI GGCC 1 cut(s) 316
BspCNI CTCAG 2 cut(s) 7, 291
BspFNI CGCG 1 cut(s) 22
BspLI GGNNCC 2 cut(s) 143, 230
BspOI GCTAGC 1 cut(s) 132
BspT107I GGYRCC 1 cut(s) 141
BssMI GATC 1 cut(s) 184
BstAPI GCANNNNNTGC 1 cut(s) 11
BstC8I GCNNGC 1 cut(s) 130
BstDEI CTNAG 3 cut(s) 15, 214, 299
BstF5I GGATG 1 cut(s) 76
BstFNI CGCG 1 cut(s) 22
BstKTI GATC 1 cut(s) 187
BstMAI GTCTC 1 cut(s) 80
BstMBI GATC 1 cut(s) 184
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstUI CGCG 1 cut(s) 22
BstV2I GAAGAC 1 cut(s) 280
BstX2I RGATCY 1 cut(s) 184
BstYI RGATCY 1 cut(s) 184
Bsu36I CCTNAGG 1 cut(s) 299
BsuRI GGCC 1 cut(s) 316
BtsCI GGATG 1 cut(s) 76
Cac8I GCNNGC 1 cut(s) 130
CseI GACGC 1 cut(s) 11
Csp6I GTAC 3 cut(s) 110, 142, 190
CviAII CATG 1 cut(s) 238
CviJI RGCY 7 cut(s) 19, 52, 128, 132, 242, 254, 316
CviKI_1 RGCY 7 cut(s) 19, 52, 128, 132, 242, 254, 316
CviQI GTAC 3 cut(s) 110, 142, 190
DdeI CTNAG 3 cut(s) 15, 214, 299
DpnI GATC 1 cut(s) 186
DpnII GATC 1 cut(s) 184
EaeI YGGCCR 1 cut(s) 314
Eco81I CCTNAGG 1 cut(s) 299
EcoT22I ATGCAT 1 cut(s) 325
FaeI CATG 1 cut(s) 241
FaiI YATR 4 cut(s) 27, 29, 239, 280
FatI CATG 1 cut(s) 237
FauNDI CATATG 1 cut(s) 27
Fnu4HI GCNGC 2 cut(s) 12, 20
FokI GGATG 1 cut(s) 83
Fsp4HI GCNGC 2 cut(s) 12, 20
FspBI CTAG 2 cut(s) 129, 233
GluI GCNGC 2 cut(s) 12, 20
HaeIII GGCC 1 cut(s) 316
HgaI GACGC 1 cut(s) 11
Hin1II CATG 1 cut(s) 241
HphI GGTGA 1 cut(s) 113
Hpy188I TCNGA 1 cut(s) 161
Hpy188III TCNNGA 1 cut(s) 41
Hpy99I CGWCG 1 cut(s) 251
HpyCH4V TGCA 1 cut(s) 323
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 3 cut(s) 15, 214, 299
Hsp92II CATG 1 cut(s) 241
KpnI GGTACC 1 cut(s) 145
Kzo9I GATC 1 cut(s) 184
LmnI GCTCC 1 cut(s) 251
LpnPI CCDG 1 cut(s) 311
LweI GCATC 1 cut(s) 14
MaeI CTAG 2 cut(s) 129, 233
MalI GATC 1 cut(s) 186
MboI GATC 1 cut(s) 184
MboII GAAGA 1 cut(s) 280
MflI RGATCY 1 cut(s) 184
MluCI AATT 1 cut(s) 104
MnlI CCTC 8 cut(s) 37, 55, 132, 163, 214, 255, 294, 302
Mph1103I ATGCAT 1 cut(s) 325
MvnI CGCG 1 cut(s) 22
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeI CATATG 1 cut(s) 27
NdeII GATC 1 cut(s) 184
NheI GCTAGC 1 cut(s) 128
NlaIII CATG 1 cut(s) 241
NlaIV GGNNCC 2 cut(s) 143, 230
NmeAIII GCCGAG 1 cut(s) 292
NsiI ATGCAT 1 cut(s) 325
PkrI GCNGC 2 cut(s) 13, 21
PspN4I GGNNCC 2 cut(s) 143, 230
PsuI RGATCY 1 cut(s) 184
RsaI GTAC 3 cut(s) 111, 143, 191
RsaNI GTAC 3 cut(s) 110, 142, 190
SatI GCNGC 2 cut(s) 12, 20
Sau3AI GATC 1 cut(s) 184
SetI ASST 6 cut(s) 54, 130, 134, 143, 225, 256
SfaNI GCATC 1 cut(s) 14
SmlI CTYRAG 1 cut(s) 41
SmoI CTYRAG 1 cut(s) 41
Sse9I AATT 1 cut(s) 104
SsiI CCGC 1 cut(s) 20
SspMI CTAG 2 cut(s) 129, 233
TaqI TCGA 1 cut(s) 124
TasI AATT 1 cut(s) 104
TauI GCSGC 1 cut(s) 22
TseI GCWGC 1 cut(s) 11
TspGWI ACGGA 1 cut(s) 264
XspI CTAG 2 cut(s) 129, 233
Zsp2I ATGCAT 1 cut(s) 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.