Rmu_sc0000058.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000058.1
N/A
Physical Location & Seq
Reverse (-)
1 .. 1899
1899 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 608 bp
atgaatgaagaagaccccagaaggctgtgggtctcactcaaagaaagatttggcaatgtccgtgactccttgcttcttaacctagaagtgagatggcatagcctccgcctctgtgatttcaagtcagttcttgactacaacttagaagcatttcgcattaaatccttaatggaattctgtggtaaagagatcaaagatgcaatgttgattaagaagactctctctaccttccatgtctctacattgatggttgctaagaactatcgaatcaatgttactgcaggacggatctcaatgtttcatgagctcattggagctatgaatgtcgttgaaaagtatgacaacatccttgtgaagaactataattcaagatctgtggaaacagagcatatatttcggagtccaattatagtcgtgccctccactaaggaaggtaaccgccaaaaaaggcgaacacataaccaaaaaggtcaacgtggaaagagagagggaggcaacgcctctagccgtgttggtggcaccaccaacattaagagccagcctcatcaatggagtctgagcacagagatgtatgttcccaatgtgaagtgttcagtcattgggcacac
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

203

Amino Acids

23.41

Weight (kDa)

9.89

Isoelectric Point (pI)

48.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 518
AciI CCGC 2 cut(s) 106, 439
AclWI GGATC 1 cut(s) 296
AcsI RAATTY 1 cut(s) 173
AgsI TTSAA 3 cut(s) 121, 332, 369
AluBI AGCT 2 cut(s) 307, 317
AluI AGCT 2 cut(s) 307, 317
Alw21I GWGCWC 2 cut(s) 309, 563
Alw26I GTCTC 2 cut(s) 37, 241
AlwI GGATC 1 cut(s) 296
ApoI RAATTY 1 cut(s) 173
Asp700I GAANNNNTTC 1 cut(s) 150
BaeGI GKGCMC 2 cut(s) 420, 606
BanI GGYRCC 1 cut(s) 518
BanII GRGCYC 1 cut(s) 309
BbsI GAAGAC 2 cut(s) 18, 221
Bbv12I GWGCWC 2 cut(s) 309, 563
BccI CCATC 2 cut(s) 87, 241
BceAI ACGGC 1 cut(s) 492
BcgI CGANNNNNNTGC 2 cut(s) 377, 411
BcoDI GTCTC 2 cut(s) 37, 241
BfaI CTAG 2 cut(s) 83, 504
BfmI CTRYAG 1 cut(s) 279
BglII AGATCT 1 cut(s) 371
BmiI GGNNCC 1 cut(s) 520
BmsI GCATC 1 cut(s) 187
BpiI GAAGAC 2 cut(s) 18, 221
BplI GAGNNNNNCTC 2 cut(s) 526, 558
BsaI GGTCTC 1 cut(s) 37
Bse3DI GCAATG 2 cut(s) 61, 207
BseGI GGATG 1 cut(s) 345
BseMI GCAATG 2 cut(s) 61, 207
BseMII CTCAG 1 cut(s) 548
BseSI GKGCMC 2 cut(s) 420, 606
BshNI GGYRCC 1 cut(s) 518
BsiHKAI GWGCWC 2 cut(s) 309, 563
BsmAI GTCTC 2 cut(s) 37, 241
Bso31I GGTCTC 1 cut(s) 37
Bsp1286I GDGCHC 4 cut(s) 309, 420, 563, 606
Bsp143I GATC 3 cut(s) 189, 288, 371
BspACI CCGC 2 cut(s) 106, 439
BspCNI CTCAG 1 cut(s) 549
BspHI TCATGA 1 cut(s) 301
BspLI GGNNCC 1 cut(s) 520
BspMAI CTGCAG 1 cut(s) 283
BspPI GGATC 1 cut(s) 296
BspT107I GGYRCC 1 cut(s) 518
BspTNI GGTCTC 1 cut(s) 37
BsrDI GCAATG 2 cut(s) 61, 207
BssMI GATC 3 cut(s) 189, 288, 371
BstC8I GCNNGC 1 cut(s) 539
BstDEI CTNAG 4 cut(s) 142, 255, 426, 557
BstEII GGTNACC 1 cut(s) 434
BstF5I GGATG 1 cut(s) 345
BstKTI GATC 3 cut(s) 192, 291, 374
BstMAI GTCTC 2 cut(s) 37, 241
BstMBI GATC 3 cut(s) 189, 288, 371
BstPI GGTNACC 1 cut(s) 434
BstSFI CTRYAG 1 cut(s) 279
BstSLI GKGCMC 2 cut(s) 420, 606
BstV2I GAAGAC 2 cut(s) 18, 221
BstX2I RGATCY 2 cut(s) 288, 371
BstYI RGATCY 2 cut(s) 288, 371
BtsCI GGATG 1 cut(s) 345
Cac8I GCNNGC 1 cut(s) 539
CciI TCATGA 1 cut(s) 301
CspCI CAANNNNNGTGG 2 cut(s) 357, 392
CviAII CATG 2 cut(s) 233, 302
CviJI RGCY 7 cut(s) 25, 102, 307, 317, 507, 537, 541
CviKI_1 RGCY 7 cut(s) 25, 102, 307, 317, 507, 537, 541
DdeI CTNAG 4 cut(s) 142, 255, 426, 557
DpnI GATC 3 cut(s) 191, 290, 373
DpnII GATC 3 cut(s) 189, 288, 371
EciI GGCGGA 1 cut(s) 95
Ecl136II GAGCTC 1 cut(s) 307
Eco24I GRGCYC 1 cut(s) 309
Eco31I GGTCTC 1 cut(s) 37
Eco53kI GAGCTC 1 cut(s) 307
Eco91I GGTNACC 1 cut(s) 434
EcoICRI GAGCTC 1 cut(s) 307
EcoO65I GGTNACC 1 cut(s) 434
EcoRI GAATTC 1 cut(s) 173
EcoT38I GRGCYC 1 cut(s) 309
FaeI CATG 2 cut(s) 236, 305
FatI CATG 2 cut(s) 232, 301
FokI GGATG 1 cut(s) 332
FriOI GRGCYC 1 cut(s) 309
FspBI CTAG 2 cut(s) 83, 504
Hin1II CATG 2 cut(s) 236, 305
HincII GTYRAC 1 cut(s) 473
HindII GTYRAC 1 cut(s) 473
HinfI GANTC 5 cut(s) 65, 217, 267, 400, 553
Hpy166II GTNNAC 1 cut(s) 473
Hpy188I TCNGA 2 cut(s) 399, 558
Hpy188III TCNNGA 3 cut(s) 131, 302, 369
Hpy8I GTNNAC 1 cut(s) 473
HpyAV CCTTC 3 cut(s) 15, 238, 425
HpyCH4IV ACGT 1 cut(s) 475
HpyCH4V TGCA 2 cut(s) 200, 281
HpyF3I CTNAG 4 cut(s) 142, 255, 426, 557
HpySE526I ACGT 1 cut(s) 475
Hsp92II CATG 2 cut(s) 236, 305
Kzo9I GATC 3 cut(s) 189, 288, 371
LmnI GCTCC 1 cut(s) 314
LpnPI CCDG 3 cut(s) 31, 267, 551
LweI GCATC 1 cut(s) 187
MaeI CTAG 2 cut(s) 83, 504
MaeII ACGT 1 cut(s) 475
MaeIII GTNAC 3 cut(s) 62, 274, 434
MalI GATC 3 cut(s) 191, 290, 373
MboI GATC 3 cut(s) 189, 288, 371
MboII GAAGA 4 cut(s) 20, 23, 226, 367
MflI RGATCY 2 cut(s) 288, 371
MhlI GDGCHC 4 cut(s) 309, 420, 563, 606
MluCI AATT 3 cut(s) 173, 364, 405
MlyI GAGTC 4 cut(s) 59, 211, 409, 562
MnlI CCTC 7 cut(s) 113, 119, 430, 481, 485, 511, 552
MroXI GAANNNNTTC 1 cut(s) 150
MseI TTAA 5 cut(s) 78, 159, 167, 210, 531
MslI CAYNNNNRTG 2 cut(s) 350, 566
NdeII GATC 3 cut(s) 189, 288, 371
NlaIII CATG 2 cut(s) 236, 305
NlaIV GGNNCC 1 cut(s) 520
NmuCI GTSAC 1 cut(s) 62
PagI TCATGA 1 cut(s) 301
PdmI GAANNNNTTC 1 cut(s) 150
PfeI GAWTC 1 cut(s) 267
PleI GAGTC 4 cut(s) 59, 211, 408, 561
PpsI GAGTC 4 cut(s) 59, 211, 408, 561
Psp124BI GAGCTC 1 cut(s) 309
PspEI GGTNACC 1 cut(s) 434
PspN4I GGNNCC 1 cut(s) 520
PstI CTGCAG 1 cut(s) 283
PsuI RGATCY 2 cut(s) 288, 371
RseI CAYNNNNRTG 2 cut(s) 350, 566
SacI GAGCTC 1 cut(s) 309
SaqAI TTAA 5 cut(s) 78, 159, 167, 210, 531
Sau3AI GATC 3 cut(s) 189, 288, 371
SchI GAGTC 4 cut(s) 59, 211, 409, 562
SduI GDGCHC 4 cut(s) 309, 420, 563, 606
SetI ASST 7 cut(s) 84, 230, 309, 319, 436, 472, 478
SfaNI GCATC 1 cut(s) 187
SfcI CTRYAG 1 cut(s) 279
SmiMI CAYNNNNRTG 2 cut(s) 350, 566
Sse9I AATT 3 cut(s) 173, 364, 405
SsiI CCGC 2 cut(s) 106, 439
SspMI CTAG 2 cut(s) 83, 504
SstI GAGCTC 1 cut(s) 309
TaiI ACGT 1 cut(s) 478
TaqI TCGA 1 cut(s) 265
TasI AATT 3 cut(s) 173, 364, 405
TfiI GAWTC 1 cut(s) 267
Tru1I TTAA 5 cut(s) 78, 159, 167, 210, 531
Tru9I TTAA 5 cut(s) 78, 159, 167, 210, 531
TseFI GTSAC 1 cut(s) 62
Tsp45I GTSAC 1 cut(s) 62
TspDTI ATGAA 4 cut(s) 17, 21, 290, 335
TspGWI ACGGA 2 cut(s) 50, 301
XapI RAATTY 1 cut(s) 173
XmnI GAANNNNTTC 1 cut(s) 150
XspI CTAG 2 cut(s) 83, 504
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.