Rmu_sc0000060.1_g000027

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000060.1
N/A
Physical Location & Seq
Forward (+)
140009 .. 140563
555 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 417 bp
atgtcgaatgaaccaagactcgactttcctatgcttgacccaacgggttcgaaataccatagttgggtaaccgacgttgagaaccacctcacttctttgggaatattacccataattctaccaccaaatccggaactcattttcgagcctacaaccactaagcatgctcgagaccaatggagcaatctgcttgttgcggacttcaaaattgttgctgaatataattcaaaagctctttgcctcaaatccatgttgaggttttgtggacagcctgtcacagaacaagagctaattgagaaaactctcaccaccttccccgtctcagcaatcttggtgtcaaagcaatatcgaagcgaatgcaatactggacggatcacgaggtttaataagctcatcaatgttatatctatagcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

138

Amino Acids

15.65

Weight (kDa)

6.82

Isoelectric Point (pI)

43.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 130
AciI CCGC 1 cut(s) 197
AclWI GGATC 1 cut(s) 380
AfiI CCNNNNNNNGG 2 cut(s) 64, 255
AgsI TTSAA 2 cut(s) 205, 228
AhdI GACNNNNNGTC 1 cut(s) 272
AluBI AGCT 4 cut(s) 233, 289, 391, 413
AluI AGCT 4 cut(s) 233, 289, 391, 413
Alw26I GTCTC 2 cut(s) 165, 325
AlwI GGATC 1 cut(s) 380
Ama87I CYCGRG 1 cut(s) 168
Aor13HI TCCGGA 1 cut(s) 130
AsuHPI GGTGA 1 cut(s) 298
AsuII TTCGAA 1 cut(s) 50
AvaI CYCGRG 1 cut(s) 168
BauI CACGAG 1 cut(s) 376
BcgI CGANNNNNNTGC 2 cut(s) 339, 373
BcoDI GTCTC 2 cut(s) 165, 325
BfmI CTRYAG 1 cut(s) 408
BmeRI GACNNNNNGTC 1 cut(s) 272
BmeT110I CYCGRG 1 cut(s) 168
Bpu14I TTCGAA 1 cut(s) 50
BsaI GGTCTC 1 cut(s) 165
BsaWI WCCGGW 1 cut(s) 130
Bsc4I CCNNNNNNNGG 2 cut(s) 64, 255
Bse1I ACTGG 1 cut(s) 370
BseAI TCCGGA 1 cut(s) 130
BseLI CCNNNNNNNGG 2 cut(s) 64, 255
BseMII CTCAG 1 cut(s) 336
BseNI ACTGG 1 cut(s) 370
BsiHKCI CYCGRG 1 cut(s) 168
BsiSI CCGG 1 cut(s) 131
BslI CCNNNNNNNGG 2 cut(s) 64, 255
BsmAI GTCTC 2 cut(s) 165, 325
BsmBI CGTCTC 1 cut(s) 325
BsmI GAATGC 1 cut(s) 362
Bso31I GGTCTC 1 cut(s) 165
BsoBI CYCGRG 1 cut(s) 168
Bsp119I TTCGAA 1 cut(s) 50
Bsp13I TCCGGA 1 cut(s) 130
Bsp143I GATC 1 cut(s) 372
BspACI CCGC 1 cut(s) 197
BspCNI CTCAG 1 cut(s) 335
BspEI TCCGGA 1 cut(s) 130
BspPI GGATC 1 cut(s) 380
BspT104I TTCGAA 1 cut(s) 50
BspTNI GGTCTC 1 cut(s) 165
BsrI ACTGG 1 cut(s) 370
BssMI GATC 1 cut(s) 372
BssSI CACGAG 1 cut(s) 376
Bst2BI CACGAG 1 cut(s) 376
BstBI TTCGAA 1 cut(s) 50
BstC8I GCNNGC 1 cut(s) 165
BstDEI CTNAG 3 cut(s) 159, 322, 414
BstEII GGTNACC 1 cut(s) 67
BstKTI GATC 1 cut(s) 375
BstMAI GTCTC 2 cut(s) 165, 325
BstMBI GATC 1 cut(s) 372
BstNSI RCATGY 1 cut(s) 167
BstPI GGTNACC 1 cut(s) 67
BstSFI CTRYAG 1 cut(s) 408
Cac8I GCNNGC 1 cut(s) 165
CviAII CATG 2 cut(s) 164, 250
CviJI RGCY 6 cut(s) 148, 233, 271, 289, 391, 413
CviKI_1 RGCY 6 cut(s) 148, 233, 271, 289, 391, 413
DdeI CTNAG 3 cut(s) 159, 322, 414
DpnI GATC 1 cut(s) 374
DpnII GATC 1 cut(s) 372
DriI GACNNNNNGTC 1 cut(s) 272
Eam1105I GACNNNNNGTC 1 cut(s) 272
Eco31I GGTCTC 1 cut(s) 165
Eco88I CYCGRG 1 cut(s) 168
Eco91I GGTNACC 1 cut(s) 67
EcoO65I GGTNACC 1 cut(s) 67
Esp3I CGTCTC 1 cut(s) 325
FaeI CATG 2 cut(s) 167, 253
FaiI YATR 8 cut(s) 32, 60, 113, 165, 222, 251, 404, 410
FatI CATG 2 cut(s) 163, 249
HapII CCGG 1 cut(s) 131
Hin1II CATG 2 cut(s) 167, 253
HinfI GANTC 1 cut(s) 18
HpaII CCGG 1 cut(s) 131
HphI GGTGA 1 cut(s) 298
Hpy166II GTNNAC 1 cut(s) 266
Hpy188III TCNNGA 3 cut(s) 131, 170, 376
Hpy8I GTNNAC 1 cut(s) 266
Hpy99I CGWCG 1 cut(s) 77
HpyAV CCTTC 1 cut(s) 322
HpyCH4IV ACGT 1 cut(s) 75
HpyCH4V TGCA 1 cut(s) 360
HpyF3I CTNAG 3 cut(s) 159, 322, 414
HpySE526I ACGT 1 cut(s) 75
Hsp92II CATG 2 cut(s) 167, 253
Kpn2I TCCGGA 1 cut(s) 130
Kzo9I GATC 1 cut(s) 372
LmnI GCTCC 1 cut(s) 180
LpnPI CCDG 3 cut(s) 144, 285, 351
MaeII ACGT 1 cut(s) 75
MaeIII GTNAC 2 cut(s) 67, 274
MalI GATC 1 cut(s) 374
MboI GATC 1 cut(s) 372
MluCI AATT 4 cut(s) 114, 207, 223, 291
MlyI GAGTC 1 cut(s) 12
MnlI CCTC 4 cut(s) 98, 249, 251, 372
MroI TCCGGA 1 cut(s) 130
MseI TTAA 1 cut(s) 384
MspI CCGG 1 cut(s) 131
Mva1269I GAATGC 1 cut(s) 362
NdeII GATC 1 cut(s) 372
NlaIII CATG 2 cut(s) 167, 253
NmuCI GTSAC 1 cut(s) 274
NspI RCATGY 1 cut(s) 167
NspV TTCGAA 1 cut(s) 50
PaeI GCATGC 1 cut(s) 167
PaeR7I CTCGAG 1 cut(s) 168
PctI GAATGC 1 cut(s) 362
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
PspEI GGTNACC 1 cut(s) 67
SaqAI TTAA 1 cut(s) 384
Sau3AI GATC 1 cut(s) 372
SchI GAGTC 1 cut(s) 12
SetI ASST 9 cut(s) 78, 90, 235, 260, 291, 314, 383, 393, 415
SfcI CTRYAG 1 cut(s) 408
Sfr274I CTCGAG 1 cut(s) 168
SfuI TTCGAA 1 cut(s) 50
SlaI CTCGAG 1 cut(s) 168
SmlI CTYRAG 1 cut(s) 168
SmoI CTYRAG 1 cut(s) 168
SphI GCATGC 1 cut(s) 167
Sse9I AATT 4 cut(s) 114, 207, 223, 291
SsiI CCGC 1 cut(s) 197
SspI AATATT 1 cut(s) 105
TaiI ACGT 1 cut(s) 78
TaqI TCGA 6 cut(s) 5, 21, 50, 144, 169, 349
TasI AATT 4 cut(s) 114, 207, 223, 291
Tru1I TTAA 1 cut(s) 384
Tru9I TTAA 1 cut(s) 384
TseFI GTSAC 1 cut(s) 274
Tsp45I GTSAC 1 cut(s) 274
TspDTI ATGAA 1 cut(s) 24
TspGWI ACGGA 1 cut(s) 385
XceI RCATGY 1 cut(s) 167
XhoI CTCGAG 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.