Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000060.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

143477 .. 144380

Gene Structure 904 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

atgtcgacaaatgaagtagtactaaaccctcctcatcattttctttctttcttcttctctctccttctcctctctctcttctccttttccaccgcccaaaccatcactaacgccgccatcgttcgcaagctccaatccttaggtttcaccaacctcgtcctccgcacccacaccaaccttgagtccttcttcgccgccgaaaagccccaattcgtaatcctcgccgccgctaaagtcggtggcatcgacgccaccaatacctacccggctgacttcatcgccctcaacctccaaatccagaccaccgacatcgacgcctcgcaccgatttggatcaaccgccttcatcaaccaggacccctccctcaagttcctcatctcccgcctcgacctcgtcgccaaccgcaactcccgattcctgccgaacttcgcttttcctgtcaccctccaccaccgcgaacccaacccatcctcttcaatttctcagcatccaaccaccgagctcgaagaagaagaatttttaaaaaaaaaattgttgatgacatttaacatgatcagggtcattttggtctttgggtatcacattgatacttttgagagttcgggtatcaaattggctttggcagcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005975 GO:0005996 GO:0006004 GO:0006005 GO:0006139 GO:0006725 GO:0006793 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009225 GO:0009226 GO:0009987 GO:0016051 GO:0016491 GO:0016614 GO:0016616 GO:0018130 GO:0019318 GO:0019319 GO:0019438 GO:0034641 GO:0034654 GO:0042350 GO:0042353 GO:0042354 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0046364 GO:0046368 GO:0046483 GO:0050577 GO:0055086 GO:0055114 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00051 ko00520 ko01100 map00051 map00520 map01100

Pfam Domains

Protein Families

Epimerase

Protein Analysis

209

Amino Acids

23.39

Weight (kDa)

6.7

Isoelectric Point (pI)

33.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Epimerase	PF01370	44 - 116	7.2e-08	NAD dependent epimerase/dehydratase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	5
AccII	CGCG	1 cut(s)	456
AclWI	GGATC	1 cut(s)	340
AcsI	RAATTY	1 cut(s)	515
AcyI	GRCGYC	2 cut(s)	249, 315
AfaI	GTAC	1 cut(s)	21
AgsI	TTSAA	1 cut(s)	477
AjnI	CCWGG	1 cut(s)	351
AluBI	AGCT	2 cut(s)	130, 502
AluI	AGCT	2 cut(s)	130, 502
Alw21I	GWGCWC	1 cut(s)	504
AlwI	GGATC	1 cut(s)	340
ApeKI	GCWGC	1 cut(s)	623
ApoI	RAATTY	1 cut(s)	515
AspS9I	GGNCC	1 cut(s)	355
AsuC2I	CCSGG	1 cut(s)	266
AsuHPI	GGTGA	2 cut(s)	139, 433
AvaII	GGWCC	1 cut(s)	355
AxyI	CCTNAGG	1 cut(s)	139
BanII	GRGCYC	1 cut(s)	504
Bbv12I	GWGCWC	1 cut(s)	504
BccI	CCATC	3 cut(s)	110, 125, 475
BciT130I	CCWGG	1 cut(s)	353
BclI	TGATCA	1 cut(s)	552
BcnI	CCSGG	1 cut(s)	266
BisI	GCNGC	5 cut(s)	114, 195, 225, 228, 624
BlsI	GCNGC	5 cut(s)	115, 196, 226, 229, 625
BmcAI	AGTACT	1 cut(s)	21
Bme1390I	CCNGG	2 cut(s)	266, 353
Bme18I	GGWCC	1 cut(s)	355
BmgT120I	GGNCC	1 cut(s)	355
BmiI	GGNNCC	1 cut(s)	357
BmrFI	CCNGG	2 cut(s)	266, 353
BmsI	GCATC	2 cut(s)	252, 496
BpuEI	CTTGAG	2 cut(s)	200, 350
BpuMI	CCSGG	1 cut(s)	266
BsaBI	GATNNNNATC	1 cut(s)	331
BsaHI	GRCGYC	2 cut(s)	249, 315
BsaXI	ACNNNNNCTCC	2 cut(s)	392, 422
Bse21I	CCTNAGG	1 cut(s)	139
Bse8I	GATNNNNATC	1 cut(s)	331
BseBI	CCWGG	1 cut(s)	353
BseGI	GGATG	2 cut(s)	467, 487
BseJI	GATNNNNATC	1 cut(s)	331
BseMII	CTCAG	1 cut(s)	497
BseRI	GAGGAG	2 cut(s)	21, 59
Bsh1236I	CGCG	1 cut(s)	456
BsiHKAI	GWGCWC	1 cut(s)	504
BsiSI	CCGG	1 cut(s)	266
Bsp1286I	GDGCHC	1 cut(s)	504
Bsp143I	GATC	2 cut(s)	332, 552
BspCNI	CTCAG	1 cut(s)	496
BspFNI	CGCG	1 cut(s)	456
BspLI	GGNNCC	1 cut(s)	357
BspPI	GGATC	1 cut(s)	340
BssMI	GATC	2 cut(s)	332, 552
BssNI	GRCGYC	2 cut(s)	249, 315
Bst2UI	CCWGG	1 cut(s)	353
Bst6I	CTCTTC	2 cut(s)	83, 478
BstACI	GRCGYC	2 cut(s)	249, 315
BstC8I	GCNNGC	1 cut(s)	128
BstDEI	CTNAG	2 cut(s)	139, 483
BstF5I	GGATG	2 cut(s)	467, 487
BstFNI	CGCG	1 cut(s)	456
BstKTI	GATC	2 cut(s)	335, 555
BstMBI	GATC	2 cut(s)	332, 552
BstMWI	GCNNNNNNNGC	1 cut(s)	623
BstNI	CCWGG	1 cut(s)	353
BstSCI	CCNGG	2 cut(s)	264, 351
BstUI	CGCG	1 cut(s)	456
Bsu36I	CCTNAGG	1 cut(s)	139
BtgZI	GCGATG	1 cut(s)	262
BtsCI	GGATG	2 cut(s)	467, 487
Cac8I	GCNNGC	1 cut(s)	128
Cfr13I	GGNCC	1 cut(s)	355
CseI	GACGC	2 cut(s)	257, 323
Csp6I	GTAC	1 cut(s)	20
CviAII	CATG	1 cut(s)	550
CviJI	RGCY	5 cut(s)	130, 205, 269, 502, 617
CviKI_1	RGCY	5 cut(s)	130, 205, 269, 502, 617
CviQI	GTAC	1 cut(s)	20
DdeI	CTNAG	2 cut(s)	139, 483
DpnI	GATC	2 cut(s)	334, 554
DpnII	GATC	2 cut(s)	332, 552
DraI	TTTAAA	1 cut(s)	522
Eam1104I	CTCTTC	2 cut(s)	83, 478
EarI	CTCTTC	2 cut(s)	83, 478
Ecl136II	GAGCTC	1 cut(s)	502
Eco24I	GRGCYC	1 cut(s)	504
Eco47I	GGWCC	1 cut(s)	355
Eco53kI	GAGCTC	1 cut(s)	502
Eco81I	CCTNAGG	1 cut(s)	139
EcoICRI	GAGCTC	1 cut(s)	502
EcoO109I	RGGNCCY	1 cut(s)	355
EcoRII	CCWGG	1 cut(s)	351
EcoT38I	GRGCYC	1 cut(s)	504
FaeI	CATG	1 cut(s)	553
FaiI	YATR	2 cut(s)	551, 628
FatI	CATG	1 cut(s)	549
FauI	CCCGC	1 cut(s)	389
FbaI	TGATCA	1 cut(s)	552
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	5 cut(s)	114, 195, 225, 228, 624
FokI	GGATG	2 cut(s)	454, 474
FriOI	GRGCYC	1 cut(s)	504
Fsp4HI	GCNGC	5 cut(s)	114, 195, 225, 228, 624
GluI	GCNGC	5 cut(s)	114, 195, 225, 228, 624
HapII	CCGG	1 cut(s)	266
HgaI	GACGC	2 cut(s)	257, 323
Hin1I	GRCGYC	2 cut(s)	249, 315
Hin1II	CATG	1 cut(s)	553
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	2 cut(s)	182, 414
HpaII	CCGG	1 cut(s)	266
HphI	GGTGA	2 cut(s)	139, 433
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188III	TCNNGA	2 cut(s)	298, 411
Hpy8I	GTNNAC	1 cut(s)	6
Hpy99I	CGWCG	3 cut(s)	251, 317, 398
HpyAV	CCTTC	3 cut(s)	74, 196, 352
HpyF10VI	GCNNNNNNNGC	1 cut(s)	623
HpyF3I	CTNAG	2 cut(s)	139, 483
Hsp92I	GRCGYC	2 cut(s)	249, 315
Hsp92II	CATG	1 cut(s)	553
Ksp22I	TGATCA	1 cut(s)	552
Kzo9I	GATC	2 cut(s)	332, 552
LmnI	GCTCC	1 cut(s)	135
LpnPI	CCDG	7 cut(s)	279, 311, 338, 365, 431, 450, 541
LweI	GCATC	2 cut(s)	252, 496
MaeIII	GTNAC	1 cut(s)	439
MalI	GATC	2 cut(s)	334, 554
MboI	GATC	2 cut(s)	332, 552
MboII	GAAGA	8 cut(s)	43, 46, 70, 181, 465, 518, 521, 524
MhlI	GDGCHC	1 cut(s)	504
MluCI	AATT	5 cut(s)	209, 477, 515, 530, 611
MlyI	GAGTC	1 cut(s)	191
MmeI	TCCRAC	1 cut(s)	515
MseI	TTAA	2 cut(s)	521, 546
MspI	CCGG	1 cut(s)	266
MspR9I	CCNGG	2 cut(s)	266, 353
MvaI	CCWGG	1 cut(s)	353
MvnI	CGCG	1 cut(s)	456
MwoI	GCNNNNNNNGC	1 cut(s)	623
NciI	CCSGG	1 cut(s)	266
NdeII	GATC	2 cut(s)	332, 552
NlaIII	CATG	1 cut(s)	553
NlaIV	GGNNCC	1 cut(s)	357
NmuCI	GTSAC	1 cut(s)	439
PcsI	WCGNNNNNNNCGW	2 cut(s)	117, 243
PfeI	GAWTC	1 cut(s)	414
PflFI	GACNNNGTC	1 cut(s)	392
PkrI	GCNGC	5 cut(s)	115, 196, 226, 229, 625
PleI	GAGTC	1 cut(s)	190
PpsI	GAGTC	1 cut(s)	190
PpuMI	RGGWCCY	1 cut(s)	355
Psp124BI	GAGCTC	1 cut(s)	504
Psp5II	RGGWCCY	1 cut(s)	355
Psp6I	CCWGG	1 cut(s)	351
PspGI	CCWGG	1 cut(s)	351
PspN4I	GGNNCC	1 cut(s)	357
PspPI	GGNCC	1 cut(s)	355
PspPPI	RGGWCCY	1 cut(s)	355
PsyI	GACNNNGTC	1 cut(s)	392
RsaI	GTAC	1 cut(s)	21
RsaNI	GTAC	1 cut(s)	20
SacI	GAGCTC	1 cut(s)	504
SalI	GTCGAC	1 cut(s)	4
SaqAI	TTAA	2 cut(s)	521, 546
SatI	GCNGC	5 cut(s)	114, 195, 225, 228, 624
Sau3AI	GATC	2 cut(s)	332, 552
Sau96I	GGNCC	1 cut(s)	355
ScaI	AGTACT	1 cut(s)	21
SchI	GAGTC	1 cut(s)	191
ScrFI	CCNGG	2 cut(s)	266, 353
SduI	GDGCHC	1 cut(s)	504
SetI	ASST	8 cut(s)	132, 145, 156, 180, 263, 291, 393, 504
SfaNI	GCATC	2 cut(s)	252, 496
SinI	GGWCC	1 cut(s)	355
SmlI	CTYRAG	2 cut(s)	179, 365
SmoI	CTYRAG	2 cut(s)	179, 365
Sse9I	AATT	5 cut(s)	209, 477, 515, 530, 611
SstI	GAGCTC	1 cut(s)	504
StyD4I	CCNGG	2 cut(s)	264, 351
TaqI	TCGA	5 cut(s)	5, 246, 312, 387, 504
TasI	AATT	5 cut(s)	209, 477, 515, 530, 611
TatI	WGTACW	1 cut(s)	19
TauI	GCSGC	4 cut(s)	116, 197, 227, 230
TfiI	GAWTC	1 cut(s)	414
Tru1I	TTAA	2 cut(s)	521, 546
Tru9I	TTAA	2 cut(s)	521, 546
TseFI	GTSAC	1 cut(s)	439
TseI	GCWGC	1 cut(s)	623
Tsp45I	GTSAC	1 cut(s)	439
TspDTI	ATGAA	3 cut(s)	27, 265, 334
Tth111I	GACNNNGTC	1 cut(s)	392
VpaK11BI	GGWCC	1 cut(s)	355
XapI	RAATTY	1 cut(s)	515
XmiI	GTMKAC	1 cut(s)	5
ZrmI	AGTACT	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.