Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000060.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

164971 .. 166991

Gene Structure 2021 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

atgattgttgaaaatgggggtgtggatttggttgtggatgttctgaaggaggatctcaaagttgaggcttaccagcatgctgctggtacattgttttatcttgctttgattgaggagtaccgggtattgatcggagaaaacccaagggccttattagctttgagggagctgatcaagaatgaaatctgttcatcttccgaattggaatatgacatcttactaatttcaatttttgttatgaaagattacggtgtgcagaggctgtggacaaaaattcgcgttcgatgtctacatcccacacttcctgctcacaatagaggcgatccaaacctctctcatctcccacaaatggcgaaacctctggttccttcttacttccggattaagattctctggagttacttctctgcagtttttgtaaatttcataaaatccgaaccactaatagaatctgatggtaaagaacaacgccacatcatctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009787 GO:0009966 GO:0009987 GO:0010029 GO:0010119 GO:0010646 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0023051 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048580 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1900140 GO:1901419 GO:1901564 GO:1905957 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm U-box

Protein Analysis

160

Amino Acids

18.41

Weight (kDa)

6.2

Isoelectric Point (pI)

38.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	289
AccII	CGCG	1 cut(s)	279
AccIII	TCCGGA	1 cut(s)	378
AclWI	GGATC	2 cut(s)	60, 317
AcsI	RAATTY	2 cut(s)	273, 421
AcuI	CTGAAG	1 cut(s)	65
AfaI	GTAC	2 cut(s)	88, 119
AfiI	CCNNNNNNNGG	1 cut(s)	349
AgsI	TTSAA	2 cut(s)	11, 228
AluBI	AGCT	2 cut(s)	158, 169
AluI	AGCT	2 cut(s)	158, 169
AlwI	GGATC	2 cut(s)	60, 317
AlwNI	CAGNNNCTG	1 cut(s)	262
Aor13HI	TCCGGA	1 cut(s)	378
AoxI	GGCC	1 cut(s)	147
ApeKI	GCWGC	1 cut(s)	80
ApoI	RAATTY	2 cut(s)	273, 421
AspS9I	GGNCC	1 cut(s)	147
AsuC2I	CCSGG	1 cut(s)	122
BbvI	GCAGC	1 cut(s)	67
BccI	CCATC	1 cut(s)	449
BclI	TGATCA	1 cut(s)	171
BcnI	CCSGG	1 cut(s)	122
BfaI	CTAG	1 cut(s)	481
BfmI	CTRYAG	1 cut(s)	408
BisI	GCNGC	1 cut(s)	81
BlsI	GCNGC	1 cut(s)	82
Bme1390I	CCNGG	1 cut(s)	122
BmgT120I	GGNCC	1 cut(s)	147
BmiI	GGNNCC	1 cut(s)	366
BmrFI	CCNGG	1 cut(s)	122
BpmI	CTGGAG	1 cut(s)	415
BpuMI	CCSGG	1 cut(s)	122
BsaJI	CCNNGG	1 cut(s)	143
BsaWI	WCCGGW	1 cut(s)	378
Bsc4I	CCNNNNNNNGG	1 cut(s)	349
BseAI	TCCGGA	1 cut(s)	378
BseDI	CCNNGG	1 cut(s)	143
BseGI	GGATG	2 cut(s)	43, 292
BseLI	CCNNNNNNNGG	1 cut(s)	349
BseRI	GAGGAG	1 cut(s)	128
BseXI	GCAGC	1 cut(s)	67
BsgI	GTGCAG	1 cut(s)	275
Bsh1236I	CGCG	1 cut(s)	279
BshFI	GGCC	1 cut(s)	149
BsiSI	CCGG	2 cut(s)	121, 379
BslI	CCNNNNNNNGG	1 cut(s)	349
BsnI	GGCC	1 cut(s)	149
Bsp13I	TCCGGA	1 cut(s)	378
Bsp143I	GATC	4 cut(s)	52, 129, 171, 322
BspANI	GGCC	1 cut(s)	149
BspEI	TCCGGA	1 cut(s)	378
BspFNI	CGCG	1 cut(s)	279
BspLI	GGNNCC	1 cut(s)	366
BspMAI	CTGCAG	1 cut(s)	412
BspPI	GGATC	2 cut(s)	60, 317
BssECI	CCNNGG	1 cut(s)	143
BssMI	GATC	4 cut(s)	52, 129, 171, 322
BssT1I	CCWWGG	1 cut(s)	143
Bst4CI	ACNGT	1 cut(s)	251
BstC8I	GCNNGC	1 cut(s)	78
BstF5I	GGATG	2 cut(s)	43, 292
BstFNI	CGCG	1 cut(s)	279
BstKTI	GATC	4 cut(s)	55, 132, 174, 325
BstMBI	GATC	4 cut(s)	52, 129, 171, 322
BstMWI	GCNNNNNNNGC	1 cut(s)	155
BstNSI	RCATGY	1 cut(s)	80
BstSCI	CCNGG	1 cut(s)	120
BstSFI	CTRYAG	1 cut(s)	408
BstUI	CGCG	1 cut(s)	279
BstV1I	GCAGC	1 cut(s)	67
BstX2I	RGATCY	1 cut(s)	52
BstYI	RGATCY	1 cut(s)	52
BsuRI	GGCC	1 cut(s)	149
BtsCI	GGATG	2 cut(s)	43, 292
Cac8I	GCNNGC	1 cut(s)	78
CaiI	CAGNNNCTG	1 cut(s)	262
Cfr13I	GGNCC	1 cut(s)	147
Csp6I	GTAC	2 cut(s)	87, 118
CviAII	CATG	1 cut(s)	77
CviJI	RGCY	5 cut(s)	68, 149, 158, 169, 262
CviKI_1	RGCY	5 cut(s)	68, 149, 158, 169, 262
CviQI	GTAC	2 cut(s)	87, 118
DpnI	GATC	4 cut(s)	54, 131, 173, 324
DpnII	GATC	4 cut(s)	52, 129, 171, 322
Eco130I	CCWWGG	1 cut(s)	143
Eco57I	CTGAAG	1 cut(s)	65
EcoO109I	RGGNCCY	1 cut(s)	147
EcoT14I	CCWWGG	1 cut(s)	143
ErhI	CCWWGG	1 cut(s)	143
FaeI	CATG	1 cut(s)	80
FaiI	YATR	4 cut(s)	78, 210, 239, 428
FatI	CATG	1 cut(s)	76
FbaI	TGATCA	1 cut(s)	171
FblI	GTMKAC	1 cut(s)	289
Fnu4HI	GCNGC	1 cut(s)	81
FokI	GGATG	2 cut(s)	50, 279
Fsp4HI	GCNGC	1 cut(s)	81
FspBI	CTAG	1 cut(s)	481
GluI	GCNGC	1 cut(s)	81
GsuI	CTGGAG	1 cut(s)	415
HaeIII	GGCC	1 cut(s)	149
HapII	CCGG	2 cut(s)	121, 379
Hin1II	CATG	1 cut(s)	80
HinfI	GANTC	2 cut(s)	388, 449
HpaII	CCGG	2 cut(s)	121, 379
Hpy166II	GTNNAC	2 cut(s)	267, 290
Hpy188I	TCNGA	5 cut(s)	45, 134, 199, 436, 454
Hpy188III	TCNNGA	3 cut(s)	175, 379, 394
Hpy8I	GTNNAC	2 cut(s)	267, 290
HpyAV	CCTTC	2 cut(s)	40, 378
HpyCH4III	ACNGT	1 cut(s)	251
HpyCH4V	TGCA	2 cut(s)	256, 410
HpyF10VI	GCNNNNNNNGC	1 cut(s)	155
Hsp92II	CATG	1 cut(s)	80
Kpn2I	TCCGGA	1 cut(s)	378
Ksp22I	TGATCA	1 cut(s)	171
Kzo9I	GATC	4 cut(s)	52, 129, 171, 322
LmnI	GCTCC	1 cut(s)	166
LpnPI	CCDG	7 cut(s)	69, 86, 134, 318, 347, 379, 392
Lsp1109I	GCAGC	1 cut(s)	67
MaeI	CTAG	1 cut(s)	481
MaeIII	GTNAC	1 cut(s)	398
MalI	GATC	4 cut(s)	54, 131, 173, 324
MboI	GATC	4 cut(s)	52, 129, 171, 322
MboII	GAAGA	1 cut(s)	186
MflI	RGATCY	1 cut(s)	52
MluCI	AATT	5 cut(s)	200, 222, 228, 273, 421
MnlI	CCTC	8 cut(s)	43, 58, 106, 156, 252, 311, 341, 369
MroI	TCCGGA	1 cut(s)	378
MseI	TTAA	1 cut(s)	384
MspI	CCGG	2 cut(s)	121, 379
MspR9I	CCNGG	1 cut(s)	122
MvnI	CGCG	1 cut(s)	279
MwoI	GCNNNNNNNGC	1 cut(s)	155
NciI	CCSGG	1 cut(s)	122
NdeII	GATC	4 cut(s)	52, 129, 171, 322
NlaIII	CATG	1 cut(s)	80
NlaIV	GGNNCC	1 cut(s)	366
NspI	RCATGY	1 cut(s)	80
PaeI	GCATGC	1 cut(s)	80
PfeI	GAWTC	2 cut(s)	388, 449
PkrI	GCNGC	1 cut(s)	82
PspN4I	GGNNCC	1 cut(s)	366
PspPI	GGNCC	1 cut(s)	147
PstI	CTGCAG	1 cut(s)	412
PstNI	CAGNNNCTG	1 cut(s)	262
PsuI	RGATCY	1 cut(s)	52
RsaI	GTAC	2 cut(s)	88, 119
RsaNI	GTAC	2 cut(s)	87, 118
SaqAI	TTAA	1 cut(s)	384
SatI	GCNGC	1 cut(s)	81
Sau3AI	GATC	4 cut(s)	52, 129, 171, 322
Sau96I	GGNCC	1 cut(s)	147
ScrFI	CCNGG	1 cut(s)	122
SetI	ASST	4 cut(s)	160, 171, 333, 361
SfcI	CTRYAG	1 cut(s)	408
SphI	GCATGC	1 cut(s)	80
Sse9I	AATT	5 cut(s)	200, 222, 228, 273, 421
SspMI	CTAG	1 cut(s)	481
StyD4I	CCNGG	1 cut(s)	120
StyI	CCWWGG	1 cut(s)	143
TaaI	ACNGT	1 cut(s)	251
TaqI	TCGA	1 cut(s)	283
TasI	AATT	5 cut(s)	200, 222, 228, 273, 421
TfiI	GAWTC	2 cut(s)	388, 449
Tru1I	TTAA	1 cut(s)	384
Tru9I	TTAA	1 cut(s)	384
TseI	GCWGC	1 cut(s)	80
TspDTI	ATGAA	4 cut(s)	180, 195, 254, 415
XapI	RAATTY	2 cut(s)	273, 421
XceI	RCATGY	1 cut(s)	80
XcmI	CCANNNNNNNNNTGG	1 cut(s)	80
XmiI	GTMKAC	1 cut(s)	289
XspI	CTAG	1 cut(s)	481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.