Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000060.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

206480 .. 207636

Gene Structure 1157 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000060.1_g000043.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

atgttgatgagggctctgccttgttgcaattcaaggaaagcttcagtatacacaagtctgcatctgaaaatccgtttgcttacccaaaggttgtgtcttggacaagaaaagggggagagagcagcaattgagtgcaatgaggagactggccatgttattggccttgacctcagaagcagctgtctgtatggttctgtcaactccaatagcagccttttccaagtacttgtgcacttgcagaagcttgatctctcggataatcacttcagtttctcagaaataccatcaacattaggccatcttacgagtcttgcatatcttaacctgtcaaagtcctcattttctggtccagaagtaggatacgagtatctcgccgaactgatgagtagatgcttggttgagactgttcagccaagaggctttgatgggagagtctacaagtgcaagatacgcgatatggtgcgggaactgataatcttgatcgcggaggagggggaattttgcaccttcaacgaaggtggagtcaagtgttcaaagctcagggcactgttgctgatgtcaagctgccgatttgactttgacaggaattcggtgtttctgcgttccctgagaatgttggatttatcaaactctactgtagatgagagttgtgtgaaggatctcttcaagaggatcagctcccttaagcgcttagcatctttgaacttaactggtgttcaggctctgaaagaagtgccatcttcaatcaataaactcctcaacctccaactcttggttctgactggatgcagcaatctaggaagtatacacccttccatcaccaatttgaataagctaattttggatctacgcaggtgtcctagacagtccttgcctcagggattgggaagggcttctcagcttcaggagctgtccggattcaaggttggcagtcggcctagaaatctgtgtttccagcttcttgagattagggaactgatcgaactaagagttctacggatgcatgtaagtgcatccacagcaatcgtaaatgatgaacttgatgtcctttctcagcttaaaaggctcaaggttctagatatcgatgctgaagattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0023052 GO:0042742 GO:0043207 GO:0043621 GO:0044464 GO:0050789 GO:0050794 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

365

Amino Acids

40.88

Weight (kDa)

8.72

Isoelectric Point (pI)

48.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	843
Acc36I	ACCTGC	1 cut(s)	843
AccB7I	CCANNNNNTGG	1 cut(s)	772
AccI	GTMKAC	3 cut(s)	48, 435, 805
AccII	CGCG	2 cut(s)	453, 485
AccIII	TCCGGA	1 cut(s)	914
AciI	CCGC	2 cut(s)	463, 485
AclWI	GGATC	3 cut(s)	666, 680, 852
AcoI	YGGCCR	1 cut(s)	148
AcsI	RAATTY	2 cut(s)	497, 586
AcuI	CTGAAG	3 cut(s)	27, 250, 887
AfaI	GTAC	1 cut(s)	225
AfeI	AGCGCT	1 cut(s)	689
AfiI	CCNNNNNNNGG	2 cut(s)	356, 772
AflII	CTTAAG	1 cut(s)	683
AgsI	TTSAA	8 cut(s)	33, 511, 534, 667, 703, 744, 829, 922
AjuI	GAANNNNNNNTTGG	2 cut(s)	759, 791
AloI	GAACNNNNNNTCC	2 cut(s)	1029, 1061
Alw21I	GWGCWC	1 cut(s)	234
Alw26I	GTCTC	2 cut(s)	137, 395
Alw44I	GTGCAC	1 cut(s)	230
AlwI	GGATC	3 cut(s)	666, 680, 852
AlwNI	CAGNNNCTG	2 cut(s)	724, 910
Aor13HI	TCCGGA	1 cut(s)	914
Aor51HI	AGCGCT	1 cut(s)	689
AoxI	GGCC	4 cut(s)	148, 160, 295, 935
ApaLI	GTGCAC	1 cut(s)	230
ApeKI	GCWGC	5 cut(s)	122, 177, 210, 564, 789
ApoI	RAATTY	2 cut(s)	497, 586
ArsI	GACNNNNNNTTYG	4 cut(s)	79, 111, 507, 539
Asp700I	GAANNNNTTC	1 cut(s)	892
AspLEI	GCGC	1 cut(s)	690
AspS9I	GGNCC	1 cut(s)	347
AsuHPI	GGTGA	1 cut(s)	811
AvaII	GGWCC	1 cut(s)	347
AxyI	CCTNAGG	1 cut(s)	876
BaeGI	GKGCMC	2 cut(s)	234, 547
BalI	TGGCCA	1 cut(s)	150
BanII	GRGCYC	1 cut(s)	16
BarI	GAAGNNNNNNTAC	2 cut(s)	796, 828
Bbv12I	GWGCWC	1 cut(s)	234
BbvI	GCAGC	5 cut(s)	134, 189, 222, 551, 801
BccI	CCATC	5 cut(s)	292, 306, 419, 745, 824
BciVI	GTATCC	1 cut(s)	353
BcoDI	GTCTC	2 cut(s)	137, 395
BfaI	CTAG	4 cut(s)	797, 861, 939, 1076
BfmI	CTRYAG	1 cut(s)	636
BfoI	RGCGCY	1 cut(s)	691
BfrI	CTTAAG	1 cut(s)	683
BfuAI	ACCTGC	1 cut(s)	843
BfuI	GTATCC	1 cut(s)	353
BisI	GCNGC	5 cut(s)	123, 178, 211, 565, 790
BlpI	GCTNAGC	1 cut(s)	691
BlsI	GCNGC	5 cut(s)	124, 179, 212, 566, 791
BmcAI	AGTACT	1 cut(s)	225
Bme18I	GGWCC	1 cut(s)	347
BmgT120I	GGNCC	1 cut(s)	347
BmsI	GCATC	7 cut(s)	70, 380, 704, 776, 990, 1022, 1075
Bpu10I	CCTNAGC	1 cut(s)	539
Bpu1102I	GCTNAGC	1 cut(s)	691
BpuEI	CTTGAG	2 cut(s)	983, 1052
Bsa29I	ATCGAT	1 cut(s)	1083
BsaWI	WCCGGW	1 cut(s)	914
Bsc4I	CCNNNNNNNGG	2 cut(s)	356, 772
Bse1I	ACTGG	3 cut(s)	151, 715, 787
Bse21I	CCTNAGG	1 cut(s)	876
Bse3DI	GCAATG	1 cut(s)	142
BseAI	TCCGGA	1 cut(s)	914
BseCI	ATCGAT	1 cut(s)	1083
BseGI	GGATG	3 cut(s)	791, 1005, 1013
BseLI	CCNNNNNNNGG	2 cut(s)	356, 772
BseMI	GCAATG	1 cut(s)	142
BseMII	CTCAG	7 cut(s)	184, 288, 553, 599, 890, 911, 1067
BseNI	ACTGG	3 cut(s)	151, 715, 787
BseRI	GAGGAG	3 cut(s)	155, 503, 746
BseSI	GKGCMC	2 cut(s)	234, 547
BseXI	GCAGC	5 cut(s)	134, 189, 222, 551, 801
Bsh1236I	CGCG	2 cut(s)	453, 485
BshFI	GGCC	4 cut(s)	150, 162, 297, 937
BshVI	ATCGAT	1 cut(s)	1083
BsiHKAI	GWGCWC	1 cut(s)	234
BsiSI	CCGG	1 cut(s)	915
BslI	CCNNNNNNNGG	2 cut(s)	356, 772
BsmAI	GTCTC	2 cut(s)	137, 395
BsnI	GGCC	4 cut(s)	150, 162, 297, 937
Bsp1286I	GDGCHC	3 cut(s)	16, 234, 547
Bsp13I	TCCGGA	1 cut(s)	914
Bsp143I	GATC	6 cut(s)	247, 480, 658, 672, 844, 978
Bsp1720I	GCTNAGC	1 cut(s)	691
BspACI	CCGC	2 cut(s)	463, 485
BspANI	GGCC	4 cut(s)	150, 162, 297, 937
BspCNI	CTCAG	7 cut(s)	183, 287, 552, 600, 889, 910, 1066
BspDI	ATCGAT	1 cut(s)	1083
BspEI	TCCGGA	1 cut(s)	914
BspFNI	CGCG	2 cut(s)	453, 485
BspMI	ACCTGC	1 cut(s)	843
BspPI	GGATC	3 cut(s)	666, 680, 852
BspTI	CTTAAG	1 cut(s)	683
BsrDI	GCAATG	1 cut(s)	142
BsrI	ACTGG	3 cut(s)	151, 715, 787
BssMI	GATC	6 cut(s)	247, 480, 658, 672, 844, 978
BssNAI	GTATAC	2 cut(s)	49, 806
Bst1107I	GTATAC	2 cut(s)	49, 806
Bst4CI	ACNGT	4 cut(s)	406, 549, 637, 867
Bst6I	CTCTTC	1 cut(s)	668
BstAFI	CTTAAG	1 cut(s)	683
BstDEI	CTNAG	9 cut(s)	170, 274, 539, 608, 691, 876, 897, 986, 1053
BstF5I	GGATG	3 cut(s)	791, 1005, 1013
BstFNI	CGCG	2 cut(s)	453, 485
BstH2I	RGCGCY	1 cut(s)	691
BstHHI	GCGC	1 cut(s)	690
BstKTI	GATC	6 cut(s)	250, 483, 661, 675, 847, 981
BstMAI	GTCTC	2 cut(s)	137, 395
BstMBI	GATC	6 cut(s)	247, 480, 658, 672, 844, 978
BstMWI	GCNNNNNNNGC	4 cut(s)	450, 907, 1019, 1063
BstNSI	RCATGY	1 cut(s)	1007
BstSFI	CTRYAG	1 cut(s)	636
BstSLI	GKGCMC	2 cut(s)	234, 547
BstUI	CGCG	2 cut(s)	453, 485
BstV1I	GCAGC	5 cut(s)	134, 189, 222, 551, 801
BstX2I	RGATCY	2 cut(s)	658, 844
BstXI	CCANNNNNNTGG	1 cut(s)	158
BstYI	RGATCY	2 cut(s)	658, 844
BstZ17I	GTATAC	2 cut(s)	49, 806
Bsu15I	ATCGAT	1 cut(s)	1083
Bsu36I	CCTNAGG	1 cut(s)	876
BsuI	GTATCC	1 cut(s)	353
BsuRI	GGCC	4 cut(s)	150, 162, 297, 937
BsuTUI	ATCGAT	1 cut(s)	1083
BtsCI	GGATG	3 cut(s)	791, 1005, 1013
BtsIMutI	CAGTG	1 cut(s)	545
BveI	ACCTGC	1 cut(s)	843
CaiI	CAGNNNCTG	2 cut(s)	724, 910
CfoI	GCGC	1 cut(s)	690
Cfr13I	GGNCC	1 cut(s)	347
ClaI	ATCGAT	1 cut(s)	1083
Csp6I	GTAC	1 cut(s)	224
CspCI	CAANNNNNGTGG	2 cut(s)	499, 534
CviAII	CATG	2 cut(s)	152, 1004
CviQI	GTAC	1 cut(s)	224
DdeI	CTNAG	9 cut(s)	170, 274, 539, 608, 691, 876, 897, 986, 1053
DpnI	GATC	6 cut(s)	249, 482, 660, 674, 846, 980
DpnII	GATC	6 cut(s)	247, 480, 658, 672, 844, 978
EaeI	YGGCCR	1 cut(s)	148
Eam1104I	CTCTTC	1 cut(s)	668
EarI	CTCTTC	1 cut(s)	668
Eco24I	GRGCYC	1 cut(s)	16
Eco32I	GATATC	1 cut(s)	1081
Eco47I	GGWCC	1 cut(s)	347
Eco47III	AGCGCT	1 cut(s)	689
Eco57I	CTGAAG	3 cut(s)	27, 250, 887
Eco81I	CCTNAGG	1 cut(s)	876
EcoRI	GAATTC	1 cut(s)	586
EcoRV	GATATC	1 cut(s)	1081
EcoT22I	ATGCAT	1 cut(s)	1005
EcoT38I	GRGCYC	1 cut(s)	16
FaeI	CATG	2 cut(s)	155, 1007
FaiI	YATR	7 cut(s)	49, 153, 189, 316, 458, 806, 1005
FalI	AAGNNNNNCTT	4 cut(s)	25, 57, 647, 679
FatI	CATG	2 cut(s)	151, 1003
FauI	CCCGC	1 cut(s)	456
FblI	GTMKAC	3 cut(s)	48, 435, 805
Fnu4HI	GCNGC	5 cut(s)	123, 178, 211, 565, 790
FokI	GGATG	3 cut(s)	798, 1000, 1012
FriOI	GRGCYC	1 cut(s)	16
Fsp4HI	GCNGC	5 cut(s)	123, 178, 211, 565, 790
FspBI	CTAG	4 cut(s)	797, 861, 939, 1076
GlaI	GCGC	1 cut(s)	689
GluI	GCNGC	5 cut(s)	123, 178, 211, 565, 790
HaeII	RGCGCY	1 cut(s)	691
HaeIII	GGCC	4 cut(s)	150, 162, 297, 937
HapII	CCGG	1 cut(s)	915
HhaI	GCGC	1 cut(s)	690
Hin1II	CATG	2 cut(s)	155, 1007
Hin6I	GCGC	1 cut(s)	688
HinP1I	GCGC	1 cut(s)	688
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HindIII	AAGCTT	2 cut(s)	39, 242
HinfI	GANTC	4 cut(s)	307, 432, 522, 918
HpaII	CCGG	1 cut(s)	915
HphI	GGTGA	1 cut(s)	811
Hpy166II	GTNNAC	5 cut(s)	49, 199, 232, 436, 806
Hpy188I	TCNGA	6 cut(s)	66, 173, 256, 277, 726, 780
Hpy188III	TCNNGA	7 cut(s)	350, 478, 667, 905, 915, 962, 1076
Hpy8I	GTNNAC	5 cut(s)	49, 199, 232, 436, 806
HpyAV	CCTTC	5 cut(s)	509, 517, 649, 822, 882
HpyCH4III	ACNGT	4 cut(s)	406, 549, 637, 867
HpyF10VI	GCNNNNNNNGC	4 cut(s)	450, 907, 1019, 1063
HpyF3I	CTNAG	9 cut(s)	170, 274, 539, 608, 691, 876, 897, 986, 1053
Hsp92II	CATG	2 cut(s)	155, 1007
HspAI	GCGC	1 cut(s)	688
Kpn2I	TCCGGA	1 cut(s)	914
Kzo9I	GATC	6 cut(s)	247, 480, 658, 672, 844, 978
LmnI	GCTCC	2 cut(s)	683, 907
Lsp1109I	GCAGC	5 cut(s)	134, 189, 222, 551, 801
LweI	GCATC	7 cut(s)	70, 380, 704, 776, 990, 1022, 1075
MaeI	CTAG	4 cut(s)	797, 861, 939, 1076
MalI	GATC	6 cut(s)	249, 482, 660, 674, 846, 980
MboI	GATC	6 cut(s)	247, 480, 658, 672, 844, 978
MboII	GAAGA	2 cut(s)	655, 732
MfeI	CAATTG	1 cut(s)	126
MflI	RGATCY	2 cut(s)	658, 844
MhlI	GDGCHC	3 cut(s)	16, 234, 547
MlsI	TGGCCA	1 cut(s)	150
MluCI	AATT	6 cut(s)	28, 126, 497, 586, 823, 837
MluNI	TGGCCA	1 cut(s)	150
MlyI	GAGTC	3 cut(s)	316, 441, 531
MmeI	TCCRAC	2 cut(s)	597, 790
Mox20I	TGGCCA	1 cut(s)	150
Mph1103I	ATGCAT	1 cut(s)	1005
MroI	TCCGGA	1 cut(s)	914
MroXI	GAANNNNTTC	1 cut(s)	892
MscI	TGGCCA	1 cut(s)	150
MseI	TTAA	4 cut(s)	321, 684, 707, 1059
MslI	CAYNNNNRTG	1 cut(s)	1008
Msp20I	TGGCCA	1 cut(s)	150
MspA1I	CMGCKG	1 cut(s)	180
MspCI	CTTAAG	1 cut(s)	683
MspI	CCGG	1 cut(s)	915
MunI	CAATTG	1 cut(s)	126
MvnI	CGCG	2 cut(s)	453, 485
MwoI	GCNNNNNNNGC	4 cut(s)	450, 907, 1019, 1063
NdeII	GATC	6 cut(s)	247, 480, 658, 672, 844, 978
NlaIII	CATG	2 cut(s)	155, 1007
NsiI	ATGCAT	1 cut(s)	1005
NspI	RCATGY	1 cut(s)	1007
PaqCI	CACCTGC	1 cut(s)	843
PdmI	GAANNNNTTC	1 cut(s)	892
PfeI	GAWTC	1 cut(s)	918
PflMI	CCANNNNNTGG	1 cut(s)	772
PkrI	GCNGC	5 cut(s)	124, 179, 212, 566, 791
PleI	GAGTC	3 cut(s)	315, 440, 530
PpsI	GAGTC	3 cut(s)	315, 440, 530
PspPI	GGNCC	1 cut(s)	347
PstNI	CAGNNNCTG	2 cut(s)	724, 910
PsuI	RGATCY	2 cut(s)	658, 844
PvuII	CAGCTG	1 cut(s)	180
RsaI	GTAC	1 cut(s)	225
RsaNI	GTAC	1 cut(s)	224
RseI	CAYNNNNRTG	1 cut(s)	1008
SaqAI	TTAA	4 cut(s)	321, 684, 707, 1059
SatI	GCNGC	5 cut(s)	123, 178, 211, 565, 790
Sau3AI	GATC	6 cut(s)	247, 480, 658, 672, 844, 978
Sau96I	GGNCC	1 cut(s)	347
ScaI	AGTACT	1 cut(s)	225
SchI	GAGTC	3 cut(s)	316, 441, 531
SduI	GDGCHC	3 cut(s)	16, 234, 547
SfaNI	GCATC	7 cut(s)	70, 380, 704, 776, 990, 1022, 1075
SfcI	CTRYAG	1 cut(s)	636
SinI	GGWCC	1 cut(s)	347
SmiMI	CAYNNNNRTG	1 cut(s)	1008
SmlI	CTYRAG	3 cut(s)	683, 962, 1067
SmoI	CTYRAG	3 cut(s)	683, 962, 1067
Sse9I	AATT	6 cut(s)	28, 126, 497, 586, 823, 837
SsiI	CCGC	2 cut(s)	463, 485
SspMI	CTAG	4 cut(s)	797, 861, 939, 1076
TaaI	ACNGT	4 cut(s)	406, 549, 637, 867
TaqI	TCGA	2 cut(s)	981, 1083
TasI	AATT	6 cut(s)	28, 126, 497, 586, 823, 837
TatI	WGTACW	1 cut(s)	223
TfiI	GAWTC	1 cut(s)	918
Tru1I	TTAA	4 cut(s)	321, 684, 707, 1059
Tru9I	TTAA	4 cut(s)	321, 684, 707, 1059
TscAI	CASTG	1 cut(s)	552
TseI	GCWGC	5 cut(s)	122, 177, 210, 564, 789
TspDTI	ATGAA	1 cut(s)	1050
TspGWI	ACGGA	2 cut(s)	62, 1012
TspRI	CASTG	1 cut(s)	552
Van91I	CCANNNNNTGG	1 cut(s)	772
Vha464I	CTTAAG	1 cut(s)	683
VneI	GTGCAC	1 cut(s)	230
VpaK11BI	GGWCC	1 cut(s)	347
XapI	RAATTY	2 cut(s)	497, 586
XbaI	TCTAGA	1 cut(s)	1075
XceI	RCATGY	1 cut(s)	1007
XmiI	GTMKAC	3 cut(s)	48, 435, 805
XmnI	GAANNNNTTC	1 cut(s)	892
XspI	CTAG	4 cut(s)	797, 861, 939, 1076
ZrmI	AGTACT	1 cut(s)	225
Zsp2I	ATGCAT	1 cut(s)	1005

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.