Rmu_sc0000062.1_g000001

Regulator of chromosome condensation (RCC1) repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000062.1
N/A
Physical Location & Seq
Reverse (-)
249 .. 659
411 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 411 bp
atggcggggtataggcctatttcaattgaggacttgccgacacatttggttttagaaatcttgtgctccgggaggctcagtgccgttgatcttttgcatttagagtcgacttctaggacattcggagggagtggggggctgtatcctcacaagtttcggtcattggtggattatgcggcgtttcaactgtgtatttcccattctgtatatgctaaaatggaagagaatgctcagacagtgctgtttgagcggtgcggtgggaagtggaagaggattttgaggttcttgcaatccgtggagcaatcgtctgacatggtggagacttcagcaggcaatgtactattttcttgttttttaaattttgatttgcttgttgtaggaggtgttgagggaatgagcaatattgtgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RCC1 RCC1_2

Protein Analysis

136

Amino Acids

15.02

Weight (kDa)

5.75

Isoelectric Point (pI)

61.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 250
AccI GTMKAC 1 cut(s) 107
AciI CCGC 4 cut(s) 5, 176, 250, 255
AcsI RAATTY 1 cut(s) 358
AcuI CTGAAG 1 cut(s) 309
AfaI GTAC 1 cut(s) 339
AgsI TTSAA 2 cut(s) 24, 185
Alw21I GWGCWC 1 cut(s) 68
Alw26I GTCTC 1 cut(s) 314
AoxI GGCC 1 cut(s) 14
ApoI RAATTY 1 cut(s) 358
AsuC2I CCSGG 1 cut(s) 70
Bbv12I GWGCWC 1 cut(s) 68
BceAI ACGGC 1 cut(s) 68
BciVI GTATCC 1 cut(s) 153
BcnI CCSGG 1 cut(s) 70
BcoDI GTCTC 1 cut(s) 314
BfaI CTAG 1 cut(s) 114
BfuI GTATCC 1 cut(s) 153
BisI GCNGC 1 cut(s) 177
BlsI GCNGC 1 cut(s) 178
Bme1390I CCNGG 1 cut(s) 70
BmrFI CCNGG 1 cut(s) 70
BpuMI CCSGG 1 cut(s) 70
BsaJI CCNNGG 1 cut(s) 294
BsaXI ACNNNNNCTCC 4 cut(s) 64, 94, 290, 320
Bse3DI GCAATG 1 cut(s) 340
BseDI CCNNGG 1 cut(s) 294
BseMI GCAATG 1 cut(s) 340
BseMII CTCAG 2 cut(s) 91, 245
BshFI GGCC 1 cut(s) 16
BsiHKAI GWGCWC 1 cut(s) 68
BsiSI CCGG 1 cut(s) 69
BsmAI GTCTC 1 cut(s) 314
BsmI GAATGC 1 cut(s) 232
BsnI GGCC 1 cut(s) 16
Bsp1286I GDGCHC 1 cut(s) 68
Bsp143I GATC 1 cut(s) 88
BspACI CCGC 4 cut(s) 5, 176, 250, 255
BspANI GGCC 1 cut(s) 16
BspCNI CTCAG 2 cut(s) 90, 244
BsrBI CCGCTC 1 cut(s) 250
BsrDI GCAATG 1 cut(s) 340
BssECI CCNNGG 1 cut(s) 294
BssMI GATC 1 cut(s) 88
Bst4CI ACNGT 2 cut(s) 189, 238
Bst6I CTCTTC 2 cut(s) 216, 263
BstC8I GCNNGC 1 cut(s) 331
BstDEI CTNAG 2 cut(s) 77, 231
BstDSI CCRYGG 1 cut(s) 294
BstKTI GATC 1 cut(s) 91
BstMAI GTCTC 1 cut(s) 314
BstMBI GATC 1 cut(s) 88
BstMWI GCNNNNNNNGC 1 cut(s) 247
BstSCI CCNGG 1 cut(s) 68
BsuI GTATCC 1 cut(s) 153
BsuRI GGCC 1 cut(s) 16
BtgI CCRYGG 1 cut(s) 294
BtsIMutI CAGTG 2 cut(s) 85, 243
Cac8I GCNNGC 1 cut(s) 331
Csp6I GTAC 1 cut(s) 338
CviAII CATG 1 cut(s) 313
CviJI RGCY 3 cut(s) 16, 76, 139
CviKI_1 RGCY 3 cut(s) 16, 76, 139
CviQI GTAC 1 cut(s) 338
DdeI CTNAG 2 cut(s) 77, 231
DpnI GATC 1 cut(s) 90
DpnII GATC 1 cut(s) 88
DraI TTTAAA 1 cut(s) 357
Eam1104I CTCTTC 2 cut(s) 216, 263
EarI CTCTTC 2 cut(s) 216, 263
Eco147I AGGCCT 1 cut(s) 16
Eco57I CTGAAG 1 cut(s) 309
FaeI CATG 1 cut(s) 316
FaiI YATR 5 cut(s) 12, 174, 208, 210, 314
FatI CATG 1 cut(s) 312
FblI GTMKAC 1 cut(s) 107
Fnu4HI GCNGC 1 cut(s) 177
Fsp4HI GCNGC 1 cut(s) 177
FspBI CTAG 1 cut(s) 114
GluI GCNGC 1 cut(s) 177
HaeIII GGCC 1 cut(s) 16
HapII CCGG 1 cut(s) 69
Hin1II CATG 1 cut(s) 316
HincII GTYRAC 1 cut(s) 108
HindII GTYRAC 1 cut(s) 108
HinfI GANTC 1 cut(s) 104
HpaII CCGG 1 cut(s) 69
Hpy166II GTNNAC 1 cut(s) 108
Hpy188I TCNGA 3 cut(s) 125, 234, 310
Hpy8I GTNNAC 1 cut(s) 108
HpyCH4III ACNGT 2 cut(s) 189, 238
HpyCH4V TGCA 2 cut(s) 97, 289
HpyF10VI GCNNNNNNNGC 1 cut(s) 247
HpyF3I CTNAG 2 cut(s) 77, 231
Hsp92II CATG 1 cut(s) 316
Kzo9I GATC 1 cut(s) 88
LmnI GCTCC 2 cut(s) 71, 298
LpnPI CCDG 2 cut(s) 82, 315
MaeI CTAG 1 cut(s) 114
MalI GATC 1 cut(s) 90
MbiI CCGCTC 1 cut(s) 250
MboI GATC 1 cut(s) 88
MboII GAAGA 2 cut(s) 233, 280
MfeI CAATTG 1 cut(s) 24
MhlI GDGCHC 1 cut(s) 68
MluCI AATT 2 cut(s) 24, 358
MlyI GAGTC 1 cut(s) 113
MnlI CCTC 8 cut(s) 22, 66, 119, 156, 264, 273, 374, 382
MseI TTAA 1 cut(s) 356
MspI CCGG 1 cut(s) 69
MspR9I CCNGG 1 cut(s) 70
MunI CAATTG 1 cut(s) 24
Mva1269I GAATGC 1 cut(s) 232
MwoI GCNNNNNNNGC 1 cut(s) 247
NciI CCSGG 1 cut(s) 70
NdeII GATC 1 cut(s) 88
NlaIII CATG 1 cut(s) 316
PceI AGGCCT 1 cut(s) 16
PctI GAATGC 1 cut(s) 232
PfoI TCCNGGA 1 cut(s) 68
PkrI GCNGC 1 cut(s) 178
PleI GAGTC 1 cut(s) 112
PpsI GAGTC 1 cut(s) 112
RsaI GTAC 1 cut(s) 339
RsaNI GTAC 1 cut(s) 338
SalI GTCGAC 1 cut(s) 106
SaqAI TTAA 1 cut(s) 356
SatI GCNGC 1 cut(s) 177
Sau3AI GATC 1 cut(s) 88
SchI GAGTC 1 cut(s) 113
ScrFI CCNGG 1 cut(s) 70
SduI GDGCHC 1 cut(s) 68
SetI ASST 2 cut(s) 284, 385
Sse9I AATT 2 cut(s) 24, 358
SseBI AGGCCT 1 cut(s) 16
SsiI CCGC 4 cut(s) 5, 176, 250, 255
SspI AATATT 1 cut(s) 403
SspMI CTAG 1 cut(s) 114
StuI AGGCCT 1 cut(s) 16
StyD4I CCNGG 1 cut(s) 68
TaaI ACNGT 2 cut(s) 189, 238
TaqI TCGA 1 cut(s) 107
TaqII GACCGA 1 cut(s) 147
TasI AATT 2 cut(s) 24, 358
TatI WGTACW 1 cut(s) 337
TauI GCSGC 1 cut(s) 179
Tru1I TTAA 1 cut(s) 356
Tru9I TTAA 1 cut(s) 356
TscAI CASTG 2 cut(s) 85, 243
TspGWI ACGGA 1 cut(s) 283
TspRI CASTG 2 cut(s) 85, 243
XapI RAATTY 1 cut(s) 358
XmiI GTMKAC 1 cut(s) 107
XspI CTAG 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.