Rmu_sc0000063.1_g000043

WD repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000063.1
N/A
Physical Location & Seq
Reverse (-)
213382 .. 214316
935 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 507 bp
atgagcactatggctctcaaggacaatttgttggttgctgtgggcttccaaggtgaactaatctgcaagcacatgaaacaacctggagttgctttctgctcaaaactaacgacagatgagaatgccatcactaatgcagtggatattttccaaaacccacctggctcaatgagggtaatgactgcaaataatgatgctcaagttagagtttttgacgttgaaaagttcgcttgcgtcaaccgcttctccttggagtggtctgtaaataacacttctgttagtcccgatggtaaggtgctcgcagtacttggtgatagtgcagactgtttgatagctgatgctcagtctggaaaagaacaagagattgatctgtttggtgagattgccggaatatccttcagccccgactctgaagctttgtttattggggttgctgatcgcacatatggtagtgtattggagttcaataagaggcactataatacctatgaagaaatagtgttctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

168

Amino Acids

18.37

Weight (kDa)

4.53

Isoelectric Point (pI)

33.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_THOC3 PF25174 52 - 144 2.2e-10 THOC3 beta-propeller domain
Beta-prop_EML_2 PF23414 54 - 148 3.1e-09 Echinoderm microtubule-associated protein second beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 241
AcuI CTGAAG 2 cut(s) 382, 432
AfaI GTAC 1 cut(s) 306
AfiI CCNNNNNNNGG 1 cut(s) 255
AgsI TTSAA 2 cut(s) 221, 466
AjnI CCWGG 2 cut(s) 82, 160
AluBI AGCT 2 cut(s) 335, 416
AluI AGCT 2 cut(s) 335, 416
Alw21I GWGCWC 2 cut(s) 8, 300
AsuHPI GGTGA 3 cut(s) 65, 323, 389
Bbv12I GWGCWC 2 cut(s) 8, 300
BccI CCATC 2 cut(s) 134, 281
BciT130I CCWGG 2 cut(s) 84, 162
BfaI CTAG 1 cut(s) 505
BmcAI AGTACT 1 cut(s) 306
Bme1390I CCNGG 2 cut(s) 84, 162
BmrFI CCNGG 2 cut(s) 84, 162
BmsI GCATC 2 cut(s) 184, 328
BpmI CTGGAG 1 cut(s) 105
BpuEI CTTGAG 1 cut(s) 183
BsaJI CCNNGG 2 cut(s) 49, 249
BsaXI ACNNNNNCTCC 2 cut(s) 230, 260
Bsc4I CCNNNNNNNGG 1 cut(s) 255
BseBI CCWGG 2 cut(s) 84, 162
BseDI CCNNGG 2 cut(s) 49, 249
BseLI CCNNNNNNNGG 1 cut(s) 255
BseMII CTCAG 1 cut(s) 356
BsgI GTGCAG 1 cut(s) 339
BsiHKAI GWGCWC 2 cut(s) 8, 300
BsiSI CCGG 1 cut(s) 387
BslFI GGGAC 1 cut(s) 267
BslI CCNNNNNNNGG 1 cut(s) 255
BsmFI GGGAC 1 cut(s) 267
BsmI GAATGC 1 cut(s) 127
Bsp1286I GDGCHC 2 cut(s) 8, 300
Bsp143I GATC 2 cut(s) 367, 436
BspACI CCGC 1 cut(s) 241
BspCNI CTCAG 1 cut(s) 355
BssECI CCNNGG 2 cut(s) 49, 249
BssMI GATC 2 cut(s) 367, 436
BssT1I CCWWGG 2 cut(s) 49, 249
Bst2UI CCWGG 2 cut(s) 84, 162
Bst4CI ACNGT 1 cut(s) 326
BstC8I GCNNGC 3 cut(s) 68, 232, 300
BstDEI CTNAG 1 cut(s) 342
BstKTI GATC 2 cut(s) 370, 439
BstMBI GATC 2 cut(s) 367, 436
BstMWI GCNNNNNNNGC 1 cut(s) 240
BstNI CCWGG 2 cut(s) 84, 162
BstSCI CCNGG 2 cut(s) 82, 160
BtsI GCAGTG 1 cut(s) 144
BtsIMutI CAGTG 1 cut(s) 144
Cac8I GCNNGC 3 cut(s) 68, 232, 300
CseI GACGC 1 cut(s) 223
Csp6I GTAC 1 cut(s) 305
CviAII CATG 1 cut(s) 73
CviJI RGCY 6 cut(s) 14, 45, 165, 335, 402, 416
CviKI_1 RGCY 6 cut(s) 14, 45, 165, 335, 402, 416
CviQI GTAC 1 cut(s) 305
DdeI CTNAG 1 cut(s) 342
DpnI GATC 2 cut(s) 369, 438
DpnII GATC 2 cut(s) 367, 436
Eco130I CCWWGG 2 cut(s) 49, 249
Eco57I CTGAAG 2 cut(s) 382, 432
EcoRII CCWGG 2 cut(s) 82, 160
EcoT14I CCWWGG 2 cut(s) 49, 249
ErhI CCWWGG 2 cut(s) 49, 249
FaeI CATG 1 cut(s) 76
FaiI YATR 6 cut(s) 11, 74, 445, 447, 480, 489
FaqI GGGAC 1 cut(s) 267
FatI CATG 1 cut(s) 72
FauNDI CATATG 1 cut(s) 445
FspBI CTAG 1 cut(s) 505
GsuI CTGGAG 1 cut(s) 105
HapII CCGG 1 cut(s) 387
HgaI GACGC 1 cut(s) 223
Hin1II CATG 1 cut(s) 76
HincII GTYRAC 1 cut(s) 238
HindII GTYRAC 1 cut(s) 238
HindIII AAGCTT 1 cut(s) 414
HinfI GANTC 1 cut(s) 407
HpaII CCGG 1 cut(s) 387
HphI GGTGA 3 cut(s) 65, 323, 389
Hpy166II GTNNAC 2 cut(s) 56, 238
Hpy188I TCNGA 1 cut(s) 412
Hpy188III TCNNGA 2 cut(s) 284, 348
Hpy8I GTNNAC 2 cut(s) 56, 238
HpyAV CCTTC 1 cut(s) 406
HpyCH4III ACNGT 1 cut(s) 326
HpyCH4IV ACGT 1 cut(s) 216
HpyCH4V TGCA 4 cut(s) 66, 137, 185, 320
HpyF10VI GCNNNNNNNGC 1 cut(s) 240
HpyF3I CTNAG 1 cut(s) 342
HpySE526I ACGT 1 cut(s) 216
Hsp92II CATG 1 cut(s) 76
Kzo9I GATC 2 cut(s) 367, 436
LpnPI CCDG 6 cut(s) 69, 96, 147, 174, 333, 400
LweI GCATC 2 cut(s) 184, 328
MaeI CTAG 1 cut(s) 505
MaeII ACGT 1 cut(s) 216
MalI GATC 2 cut(s) 369, 438
MboI GATC 2 cut(s) 367, 436
MboII GAAGA 1 cut(s) 503
MhlI GDGCHC 2 cut(s) 8, 300
MluCI AATT 1 cut(s) 25
MlyI GAGTC 1 cut(s) 401
MnlI CCTC 2 cut(s) 165, 465
MspI CCGG 1 cut(s) 387
MspR9I CCNGG 2 cut(s) 84, 162
Mva1269I GAATGC 1 cut(s) 127
MvaI CCWGG 2 cut(s) 84, 162
MwoI GCNNNNNNNGC 1 cut(s) 240
NdeI CATATG 1 cut(s) 445
NdeII GATC 2 cut(s) 367, 436
NlaIII CATG 1 cut(s) 76
PctI GAATGC 1 cut(s) 127
PleI GAGTC 1 cut(s) 401
PpsI GAGTC 1 cut(s) 401
Psp6I CCWGG 2 cut(s) 82, 160
PspGI CCWGG 2 cut(s) 82, 160
RsaI GTAC 1 cut(s) 306
RsaNI GTAC 1 cut(s) 305
Sau3AI GATC 2 cut(s) 367, 436
ScaI AGTACT 1 cut(s) 306
SchI GAGTC 1 cut(s) 401
ScrFI CCNGG 2 cut(s) 84, 162
SduI GDGCHC 2 cut(s) 8, 300
SetI ASST 8 cut(s) 55, 85, 163, 219, 297, 337, 418, 488
SfaNI GCATC 2 cut(s) 184, 328
SmlI CTYRAG 2 cut(s) 17, 198
SmoI CTYRAG 2 cut(s) 17, 198
Sse9I AATT 1 cut(s) 25
SsiI CCGC 1 cut(s) 241
SspMI CTAG 1 cut(s) 505
StyD4I CCNGG 2 cut(s) 82, 160
StyI CCWWGG 2 cut(s) 49, 249
TaaI ACNGT 1 cut(s) 326
TaiI ACGT 1 cut(s) 219
TasI AATT 1 cut(s) 25
TatI WGTACW 1 cut(s) 304
TscAI CASTG 1 cut(s) 144
TspDTI ATGAA 2 cut(s) 89, 504
TspRI CASTG 1 cut(s) 144
XcmI CCANNNNNNNNNTGG 1 cut(s) 158
XspI CTAG 1 cut(s) 505
ZrmI AGTACT 1 cut(s) 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.