Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000064.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

60681 .. 62647

Gene Structure 1967 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

atgggtatgttggggcttgttatccgagtaaactgtctattcttgttatcgttcttggtgtgttctacccctccggaggaccccatcaagtgttcatcgtcaaataacacaaactgcaccatcacaaactcctacggcatcttccccgatcgaactgtctgtaaagcgactagtgtatcataccctagtacggaggaagaactcgttaaggtcgtggctgatgcaaccaagaacaagaagagcatgaaggtggcgactcgttactcccacagcattcccaagctggtttgcccgcgcggcgaagacgggctgatcataagcaccaacaacctcaaccgtgtggtgaaggtcgacgttgaagggatgaagatgacggtggagagcggcatgacgcttaggcaggtgatcagtgaggctgcgaaggttgacttggcgttgccttacgcaccatattggtgggggctaactgtcggtgggttgctagggactggtgcgcatggaagcacattatggggtaagggaagctctgttcatgattatgtggtgggacttaggattgtgagttcaggagggcctgaagttggttatgtcaaggtgagaagtctcggtcaaggtgataaagatcttaatgcagctaagaaccaacaacacacacacacacactctctctctctctcttcctcttctgcactcccatggctgcccatcgacgcacaaagtctcactcacgcagtcaccgcttcttcacatgctgctgcctctctgagagctcagagctccgccgcagcagatcccaacctcccctctcccaatgggaaccaccgctctcggcttcaacaaaaccctaagccctctcattgccctccccaaactcgcgactccgccggcaagtttgctcccctccaaagctgctgcttgaccgttaaggccgctgcttccagcggtggttccattactcaggcgaagcagccatggcaaggagtggcgatgaagcctctgattgcgtcgatcacgacgggggtgatcctctggttcgtgccgactcctgttggcgtcaccaaaaatgcgtggcagcttctggcgattttcctcgccaccattgtcggaatcatcactcaacctctacttcgacttcgatctcatctctgtcgtcgtcgaagagcccaaggtccctctacatatgctatttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005618 GO:0005623 GO:0005975 GO:0005996 GO:0006082 GO:0006732 GO:0006766 GO:0006767 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0016051 GO:0016053 GO:0016491 GO:0016614 GO:0016899 GO:0019752 GO:0019852 GO:0019853 GO:0030312 GO:0036094 GO:0042364 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044464 GO:0046364 GO:0046394 GO:0048037 GO:0050105 GO:0050660 GO:0050662 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:0071944 GO:0097159 GO:1901265 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ALO FAD_binding_4

Protein Analysis

396

Amino Acids

42.21

Weight (kDa)

9.64

Isoelectric Point (pI)

43.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_binding_4	PF01565	59 - 191	9e-18	FAD binding domain
Na_sulph_symp	PF00939	332 - 375	1.4e-07	Sodium:sulfate symporter transmembrane region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	391
Acc16I	TGCGCA	1 cut(s)	495
Acc36I	ACCTGC	1 cut(s)	391
AccBSI	CCGCTC	2 cut(s)	384, 825
AccI	GTMKAC	1 cut(s)	351
AccII	CGCG	3 cut(s)	295, 297, 876
AccIII	TCCGGA	1 cut(s)	73
AclWI	GGATC	2 cut(s)	785, 1018
AcuI	CTGAAG	1 cut(s)	597
AcyI	GRCGYC	1 cut(s)	1053
AfaI	GTAC	1 cut(s)	190
AfiI	CCNNNNNNNGG	4 cut(s)	76, 190, 581, 977
AgsI	TTSAA	2 cut(s)	359, 836
AhlI	ACTAGT	1 cut(s)	170
AjuI	GAANNNNNNNTTGG	2 cut(s)	413, 445
AloI	GAACNNNNNNTCC	4 cut(s)	513, 545, 547, 579
AluBI	AGCT	7 cut(s)	283, 525, 635, 770, 777, 909, 1075
AluI	AGCT	7 cut(s)	283, 525, 635, 770, 777, 909, 1075
Alw21I	GWGCWC	2 cut(s)	772, 779
Alw26I	GTCTC	2 cut(s)	608, 725
AlwI	GGATC	2 cut(s)	785, 1018
AlwNI	CAGNNNCTG	1 cut(s)	1078
Aor13HI	TCCGGA	1 cut(s)	73
AoxI	GGCC	2 cut(s)	572, 927
AspLEI	GCGC	2 cut(s)	297, 496
AspS9I	GGNCC	3 cut(s)	79, 572, 1169
AsuHPI	GGTGA	7 cut(s)	355, 415, 607, 626, 727, 1033, 1048
AvaII	GGWCC	2 cut(s)	79, 1169
BaeI	ACNNNNGTAYC	2 cut(s)	159, 192
BanII	GRGCYC	3 cut(s)	772, 779, 1165
BbsI	GAAGAC	1 cut(s)	309
Bbv12I	GWGCWC	2 cut(s)	772, 779
BccI	CCATC	3 cut(s)	92, 128, 713
BceAI	ACGGC	1 cut(s)	151
BclI	TGATCA	2 cut(s)	312, 405
BcoDI	GTCTC	2 cut(s)	608, 725
BcuI	ACTAGT	1 cut(s)	170
BfaI	CTAG	3 cut(s)	171, 186, 482
BfuAI	ACCTGC	1 cut(s)	391
BglI	GCCNNNNNGGC	1 cut(s)	297
BglII	AGATCT	1 cut(s)	622
Bme18I	GGWCC	2 cut(s)	79, 1169
BmgT120I	GGNCC	3 cut(s)	79, 572, 1169
BmiI	GGNNCC	4 cut(s)	81, 818, 949, 1171
BmsI	GCATC	2 cut(s)	147, 211
BpiI	GAAGAC	1 cut(s)	309
Bpu10I	CCTNAGC	2 cut(s)	395, 846
BsaBI	GATNNNNATC	1 cut(s)	621
BsaHI	GRCGYC	1 cut(s)	1053
BsaJI	CCNNGG	3 cut(s)	695, 971, 1165
BsaWI	WCCGGW	1 cut(s)	73
Bsc4I	CCNNNNNNNGG	4 cut(s)	76, 190, 581, 977
Bse118I	RCCGGY	1 cut(s)	884
Bse1I	ACTGG	1 cut(s)	493
Bse3DI	GCAATG	1 cut(s)	856
Bse8I	GATNNNNATC	1 cut(s)	621
BseAI	TCCGGA	1 cut(s)	73
BseDI	CCNNGG	3 cut(s)	695, 971, 1165
BseGI	GGATG	1 cut(s)	369
BseJI	GATNNNNATC	1 cut(s)	621
BseLI	CCNNNNNNNGG	4 cut(s)	76, 190, 581, 977
BseMI	GCAATG	1 cut(s)	856
BseMII	CTCAG	3 cut(s)	755, 785, 971
BseNI	ACTGG	1 cut(s)	493
BsgI	GTGCAG	2 cut(s)	100, 672
Bsh1236I	CGCG	3 cut(s)	295, 297, 876
Bsh1285I	CGRYCG	1 cut(s)	151
BshFI	GGCC	2 cut(s)	574, 929
BsiEI	CGRYCG	1 cut(s)	151
BsiHKAI	GWGCWC	2 cut(s)	772, 779
BsiSI	CCGG	2 cut(s)	74, 885
BslFI	GGGAC	3 cut(s)	499, 561, 1155
BslI	CCNNNNNNNGG	4 cut(s)	76, 190, 581, 977
BsmAI	GTCTC	2 cut(s)	608, 725
BsmFI	GGGAC	3 cut(s)	499, 561, 1155
BsmI	GAATGC	1 cut(s)	273
BsnI	GGCC	2 cut(s)	574, 929
Bsp1286I	GDGCHC	3 cut(s)	772, 779, 1165
Bsp13I	TCCGGA	1 cut(s)	73
Bsp143I	GATC	8 cut(s)	148, 312, 405, 622, 790, 1008, 1023, 1136
Bsp19I	CCATGG	2 cut(s)	695, 971
Bsp68I	TCGCGA	1 cut(s)	876
BspANI	GGCC	2 cut(s)	574, 929
BspCNI	CTCAG	3 cut(s)	756, 784, 970
BspEI	TCCGGA	1 cut(s)	73
BspFNI	CGCG	3 cut(s)	295, 297, 876
BspHI	TCATGA	1 cut(s)	532
BspLI	GGNNCC	4 cut(s)	81, 818, 949, 1171
BspMI	ACCTGC	1 cut(s)	391
BspPI	GGATC	2 cut(s)	785, 1018
BspQI	GCTCTTC	2 cut(s)	233, 1153
BsrBI	CCGCTC	2 cut(s)	384, 825
BsrDI	GCAATG	1 cut(s)	856
BsrFI	RCCGGY	1 cut(s)	884
BsrI	ACTGG	1 cut(s)	493
BssAI	RCCGGY	1 cut(s)	884
BssECI	CCNNGG	3 cut(s)	695, 971, 1165
BssMI	GATC	8 cut(s)	148, 312, 405, 622, 790, 1008, 1023, 1136
BssNI	GRCGYC	1 cut(s)	1053
BssT1I	CCWWGG	3 cut(s)	695, 971, 1165
Bst4CI	ACNGT	6 cut(s)	35, 157, 338, 376, 469, 922
Bst6I	CTCTTC	4 cut(s)	233, 682, 688, 1153
BstACI	GRCGYC	1 cut(s)	1053
BstC8I	GCNNGC	2 cut(s)	293, 886
BstDEI	CTNAG	7 cut(s)	395, 551, 636, 764, 771, 846, 957
BstDSI	CCRYGG	2 cut(s)	695, 971
BstF5I	GGATG	1 cut(s)	369
BstFNI	CGCG	3 cut(s)	295, 297, 876
BstHHI	GCGC	2 cut(s)	297, 496
BstKTI	GATC	8 cut(s)	151, 315, 408, 625, 793, 1011, 1026, 1139
BstMAI	GTCTC	2 cut(s)	608, 725
BstMBI	GATC	8 cut(s)	148, 312, 405, 622, 790, 1008, 1023, 1136
BstMCI	CGRYCG	1 cut(s)	151
BstMWI	GCNNNNNNNGC	3 cut(s)	297, 737, 973
BstNSI	RCATGY	1 cut(s)	752
BstUI	CGCG	3 cut(s)	295, 297, 876
BstV2I	GAAGAC	1 cut(s)	309
BstX2I	RGATCY	2 cut(s)	622, 790
BstXI	CCANNNNNNTGG	1 cut(s)	456
BstYI	RGATCY	2 cut(s)	622, 790
BsuRI	GGCC	2 cut(s)	574, 929
BtgI	CCRYGG	2 cut(s)	695, 971
BtgZI	GCGATG	1 cut(s)	1001
BtsCI	GGATG	1 cut(s)	369
BtsIMutI	CAGTG	1 cut(s)	415
BtuMI	TCGCGA	1 cut(s)	876
BveI	ACCTGC	1 cut(s)	391
Cac8I	GCNNGC	2 cut(s)	293, 886
CaiI	CAGNNNCTG	1 cut(s)	1078
CciI	TCATGA	1 cut(s)	532
CfoI	GCGC	2 cut(s)	297, 496
Cfr10I	RCCGGY	1 cut(s)	884
Cfr13I	GGNCC	3 cut(s)	79, 572, 1169
CseI	GACGC	4 cut(s)	400, 719, 993, 1042
Csp6I	GTAC	1 cut(s)	189
CviAII	CATG	7 cut(s)	244, 388, 497, 533, 696, 749, 972
CviQI	GTAC	1 cut(s)	189
DdeI	CTNAG	7 cut(s)	395, 551, 636, 764, 771, 846, 957
DpnI	GATC	8 cut(s)	150, 314, 407, 624, 792, 1010, 1025, 1138
DpnII	GATC	8 cut(s)	148, 312, 405, 622, 790, 1008, 1023, 1136
Eam1104I	CTCTTC	4 cut(s)	233, 682, 688, 1153
EarI	CTCTTC	4 cut(s)	233, 682, 688, 1153
EciI	GGCGGA	2 cut(s)	769, 871
Ecl136II	GAGCTC	2 cut(s)	770, 777
Eco130I	CCWWGG	3 cut(s)	695, 971, 1165
Eco24I	GRGCYC	3 cut(s)	772, 779, 1165
Eco47I	GGWCC	2 cut(s)	79, 1169
Eco53kI	GAGCTC	2 cut(s)	770, 777
Eco57I	CTGAAG	1 cut(s)	597
EcoICRI	GAGCTC	2 cut(s)	770, 777
EcoO109I	RGGNCCY	3 cut(s)	79, 572, 1169
EcoT14I	CCWWGG	3 cut(s)	695, 971, 1165
EcoT38I	GRGCYC	3 cut(s)	772, 779, 1165
ErhI	CCWWGG	3 cut(s)	695, 971, 1165
FaeI	CATG	7 cut(s)	247, 391, 500, 536, 699, 752, 975
FalI	AAGNNNNNCTT	2 cut(s)	413, 445
FaqI	GGGAC	3 cut(s)	499, 561, 1155
FatI	CATG	7 cut(s)	243, 387, 496, 532, 695, 748, 971
FauI	CCCGC	1 cut(s)	300
FauNDI	CATATG	1 cut(s)	1180
FbaI	TGATCA	2 cut(s)	312, 405
FblI	GTMKAC	1 cut(s)	351
FokI	GGATG	1 cut(s)	376
FriOI	GRGCYC	3 cut(s)	772, 779, 1165
FspAI	RTGCGCAY	1 cut(s)	495
FspBI	CTAG	3 cut(s)	171, 186, 482
FspI	TGCGCA	1 cut(s)	495
GlaI	GCGC	2 cut(s)	296, 495
HaeIII	GGCC	2 cut(s)	574, 929
HapII	CCGG	2 cut(s)	74, 885
HgaI	GACGC	4 cut(s)	400, 719, 993, 1042
HhaI	GCGC	2 cut(s)	297, 496
Hin1I	GRCGYC	1 cut(s)	1053
Hin1II	CATG	7 cut(s)	247, 391, 500, 536, 699, 752, 975
Hin6I	GCGC	2 cut(s)	295, 494
HinP1I	GCGC	2 cut(s)	295, 494
HincII	GTYRAC	2 cut(s)	352, 427
HindII	GTYRAC	2 cut(s)	352, 427
HinfI	GANTC	4 cut(s)	256, 878, 1042, 1107
HpaII	CCGG	2 cut(s)	74, 885
HphI	GGTGA	7 cut(s)	355, 415, 607, 626, 727, 1033, 1048
Hpy166II	GTNNAC	3 cut(s)	31, 352, 427
Hpy188I	TCNGA	5 cut(s)	26, 765, 774, 999, 1106
Hpy188III	TCNNGA	5 cut(s)	74, 533, 567, 875, 1012
Hpy8I	GTNNAC	3 cut(s)	31, 352, 427
Hpy99I	CGWCG	6 cut(s)	356, 713, 1009, 1018, 1155, 1158
HpyAV	CCTTC	4 cut(s)	241, 340, 353, 415
HpyCH4III	ACNGT	6 cut(s)	35, 157, 338, 376, 469, 922
HpyCH4IV	ACGT	1 cut(s)	354
HpyCH4V	TGCA	4 cut(s)	117, 224, 632, 689
HpyF10VI	GCNNNNNNNGC	3 cut(s)	297, 737, 973
HpyF3I	CTNAG	7 cut(s)	395, 551, 636, 764, 771, 846, 957
HpySE526I	ACGT	1 cut(s)	354
Hsp92I	GRCGYC	1 cut(s)	1053
Hsp92II	CATG	7 cut(s)	247, 391, 500, 536, 699, 752, 975
HspAI	GCGC	2 cut(s)	295, 494
Kpn2I	TCCGGA	1 cut(s)	73
KroI	GCCGGC	1 cut(s)	884
KroNI	GCCGGC	1 cut(s)	886
Ksp22I	TGATCA	2 cut(s)	312, 405
Kzo9I	GATC	8 cut(s)	148, 312, 405, 622, 790, 1008, 1023, 1136
LguI	GCTCTTC	2 cut(s)	233, 1153
LmnI	GCTCC	2 cut(s)	782, 901
LweI	GCATC	2 cut(s)	147, 211
MaeI	CTAG	3 cut(s)	171, 186, 482
MaeII	ACGT	1 cut(s)	354
MaeIII	GTNAC	3 cut(s)	260, 733, 1054
MalI	GATC	8 cut(s)	150, 314, 407, 624, 792, 1010, 1025, 1138
MbiI	CCGCTC	2 cut(s)	384, 825
MboI	GATC	8 cut(s)	148, 312, 405, 622, 790, 1008, 1023, 1136
MboII	GAAGA	9 cut(s)	133, 209, 250, 314, 379, 669, 675, 735, 1170
MflI	RGATCY	2 cut(s)	622, 790
MhlI	GDGCHC	3 cut(s)	772, 779, 1165
MlyI	GAGTC	3 cut(s)	250, 872, 1036
MmeI	TCCRAC	1 cut(s)	1084
MroI	TCCGGA	1 cut(s)	73
MroNI	GCCGGC	1 cut(s)	884
MseI	TTAA	3 cut(s)	207, 627, 924
MslI	CAYNNNNRTG	4 cut(s)	248, 454, 537, 694
MspA1I	CMGCKG	2 cut(s)	932, 942
MspI	CCGG	2 cut(s)	74, 885
Mva1269I	GAATGC	1 cut(s)	273
MvnI	CGCG	3 cut(s)	295, 297, 876
MwoI	GCNNNNNNNGC	3 cut(s)	297, 737, 973
NaeI	GCCGGC	1 cut(s)	886
NcoI	CCATGG	2 cut(s)	695, 971
NdeI	CATATG	1 cut(s)	1180
NdeII	GATC	8 cut(s)	148, 312, 405, 622, 790, 1008, 1023, 1136
NgoMIV	GCCGGC	1 cut(s)	884
NlaIII	CATG	7 cut(s)	247, 391, 500, 536, 699, 752, 975
NlaIV	GGNNCC	4 cut(s)	81, 818, 949, 1171
NmeAIII	GCCGAG	1 cut(s)	808
NmuCI	GTSAC	2 cut(s)	733, 1054
NruI	TCGCGA	1 cut(s)	876
NsbI	TGCGCA	1 cut(s)	495
NspI	RCATGY	1 cut(s)	752
PagI	TCATGA	1 cut(s)	532
PaqCI	CACCTGC	1 cut(s)	391
PciSI	GCTCTTC	2 cut(s)	233, 1153
PcsI	WCGNNNNNNNCGW	1 cut(s)	210
PctI	GAATGC	1 cut(s)	273
PdiI	GCCGGC	1 cut(s)	886
PfeI	GAWTC	1 cut(s)	1107
Ple19I	CGATCG	1 cut(s)	151
PleI	GAGTC	3 cut(s)	250, 872, 1036
PpsI	GAGTC	3 cut(s)	250, 872, 1036
PpuMI	RGGWCCY	2 cut(s)	79, 1169
Psp124BI	GAGCTC	2 cut(s)	772, 779
Psp5II	RGGWCCY	2 cut(s)	79, 1169
PspN4I	GGNNCC	4 cut(s)	81, 818, 949, 1171
PspPI	GGNCC	3 cut(s)	79, 572, 1169
PspPPI	RGGWCCY	2 cut(s)	79, 1169
PstNI	CAGNNNCTG	1 cut(s)	1078
PsuI	RGATCY	2 cut(s)	622, 790
PvuI	CGATCG	1 cut(s)	151
RruI	TCGCGA	1 cut(s)	876
RsaI	GTAC	1 cut(s)	190
RsaNI	GTAC	1 cut(s)	189
RseI	CAYNNNNRTG	4 cut(s)	248, 454, 537, 694
SacI	GAGCTC	2 cut(s)	772, 779
SalI	GTCGAC	1 cut(s)	350
SapI	GCTCTTC	2 cut(s)	233, 1153
SaqAI	TTAA	3 cut(s)	207, 627, 924
Sau3AI	GATC	8 cut(s)	148, 312, 405, 622, 790, 1008, 1023, 1136
Sau96I	GGNCC	3 cut(s)	79, 572, 1169
SchI	GAGTC	3 cut(s)	250, 872, 1036
SduI	GDGCHC	3 cut(s)	772, 779, 1165
SfaNI	GCATC	2 cut(s)	147, 211
SinI	GGWCC	2 cut(s)	79, 1169
SmiMI	CAYNNNNRTG	4 cut(s)	248, 454, 537, 694
SpeI	ACTAGT	1 cut(s)	170
SspMI	CTAG	3 cut(s)	171, 186, 482
SstI	GAGCTC	2 cut(s)	772, 779
StyI	CCWWGG	3 cut(s)	695, 971, 1165
TaaI	ACNGT	6 cut(s)	35, 157, 338, 376, 469, 922
TaiI	ACGT	1 cut(s)	357
TaqI	TCGA	7 cut(s)	151, 351, 708, 1007, 1129, 1135, 1156
TaqII	GACCGA	1 cut(s)	596
TauI	GCSGC	4 cut(s)	300, 387, 785, 932
TfiI	GAWTC	1 cut(s)	1107
Tru1I	TTAA	3 cut(s)	207, 627, 924
Tru9I	TTAA	3 cut(s)	207, 627, 924
TscAI	CASTG	1 cut(s)	415
TseFI	GTSAC	2 cut(s)	733, 1054
Tsp45I	GTSAC	2 cut(s)	733, 1054
TspDTI	ATGAA	5 cut(s)	84, 260, 380, 521, 1004
TspGWI	ACGGA	1 cut(s)	206
TspRI	CASTG	1 cut(s)	415
VpaK11BI	GGWCC	2 cut(s)	79, 1169
XceI	RCATGY	1 cut(s)	752
XmiI	GTMKAC	1 cut(s)	351
XspI	CTAG	3 cut(s)	171, 186, 482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.