Rmu_sc0000066.1_g000036

ABC transporter B family member

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000066.1
N/A
Physical Location & Seq
Reverse (-)
155586 .. 156509
924 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 441 bp
atggaagtaagttggtttgatgaagctgagaactcaattggtgcaattgggacaaggctttctacggatgcagcagcttctttgagagggcttattggagatgttcttggtttggtgattcagaatacagcaacagcaattgctgggatgattattgcttttggtgcgaattggcaactttctcttctaatgcttgttctgttacctttattaggagtaaatggatattttcaagtccagtacatgaaaggatttagtgcagatgcaaaggttttctttgctgtcactatggcttctgttggactcgcccagtcaagctccctagcacctgatgtaaataaaggaaagggttttgctgcttcaatattcacgattcttgaccggaaatcaagaatagactctagtgataactccggcatgacaatagaaaatgtgaaatga

Protein Analysis

146

Amino Acids

15.38

Weight (kDa)

4.92

Isoelectric Point (pI)

21.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 1 - 91 6.2e-15 ABC transporter transmembrane region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 242
AfiI CCNNNNNNNGG 1 cut(s) 212
AgsI TTSAA 2 cut(s) 233, 363
AluBI AGCT 3 cut(s) 26, 77, 318
AluI AGCT 3 cut(s) 26, 77, 318
ApeKI GCWGC 3 cut(s) 71, 74, 356
AsuHPI GGTGA 1 cut(s) 127
BbvI GCAGC 3 cut(s) 83, 86, 343
BfaI CTAG 2 cut(s) 323, 402
BisI GCNGC 3 cut(s) 72, 75, 357
BlsI GCNGC 3 cut(s) 73, 76, 358
BmrI ACTGGG 1 cut(s) 304
BmsI GCATC 2 cut(s) 58, 253
BmuI ACTGGG 1 cut(s) 304
BsaWI WCCGGW 1 cut(s) 381
Bsc4I CCNNNNNNNGG 1 cut(s) 212
Bse1I ACTGG 2 cut(s) 238, 310
BseGI GGATG 2 cut(s) 73, 153
BseLI CCNNNNNNNGG 1 cut(s) 212
BseMII CTCAG 1 cut(s) 18
BseNI ACTGG 2 cut(s) 238, 310
BseXI GCAGC 3 cut(s) 83, 86, 343
BseYI CCCAGC 1 cut(s) 143
BsgI GTGCAG 1 cut(s) 279
BsiSI CCGG 2 cut(s) 382, 414
BslFI GGGAC 1 cut(s) 64
BslI CCNNNNNNNGG 1 cut(s) 212
BsmFI GGGAC 1 cut(s) 64
BspCNI CTCAG 1 cut(s) 19
BsrI ACTGG 2 cut(s) 238, 310
Bst6I CTCTTC 1 cut(s) 189
BstDEI CTNAG 1 cut(s) 27
BstENI CCTNNNNNAGG 1 cut(s) 210
BstF5I GGATG 2 cut(s) 73, 153
BstMWI GCNNNNNNNGC 1 cut(s) 164
BstV1I GCAGC 3 cut(s) 83, 86, 343
BtsCI GGATG 2 cut(s) 73, 153
Csp6I GTAC 1 cut(s) 241
CviAII CATG 2 cut(s) 244, 418
CviJI RGCY 6 cut(s) 26, 58, 77, 91, 293, 318
CviKI_1 RGCY 6 cut(s) 26, 58, 77, 91, 293, 318
CviQI GTAC 1 cut(s) 241
DdeI CTNAG 1 cut(s) 27
Eam1104I CTCTTC 1 cut(s) 189
EarI CTCTTC 1 cut(s) 189
EcoNI CCTNNNNNAGG 1 cut(s) 210
FaeI CATG 2 cut(s) 247, 421
FaiI YATR 3 cut(s) 245, 290, 419
FalI AAGNNNNNCTT 2 cut(s) 260, 292
FaqI GGGAC 1 cut(s) 64
FatI CATG 2 cut(s) 243, 417
Fnu4HI GCNGC 3 cut(s) 72, 75, 357
FokI GGATG 2 cut(s) 80, 160
Fsp4HI GCNGC 3 cut(s) 72, 75, 357
FspBI CTAG 2 cut(s) 323, 402
GluI GCNGC 3 cut(s) 72, 75, 357
GsaI CCCAGC 1 cut(s) 147
HapII CCGG 2 cut(s) 382, 414
Hin1II CATG 2 cut(s) 247, 421
HinfI GANTC 4 cut(s) 118, 303, 373, 398
HpaII CCGG 2 cut(s) 382, 414
HphI GGTGA 1 cut(s) 127
Hpy188I TCNGA 1 cut(s) 123
Hpy188III TCNNGA 3 cut(s) 370, 377, 390
HpyCH4V TGCA 4 cut(s) 44, 71, 260, 266
HpyF10VI GCNNNNNNNGC 1 cut(s) 164
HpyF3I CTNAG 1 cut(s) 27
Hsp92II CATG 2 cut(s) 247, 421
LmnI GCTCC 1 cut(s) 323
LpnPI CCDG 6 cut(s) 129, 251, 323, 342, 395, 427
Lsp1109I GCAGC 3 cut(s) 83, 86, 343
LweI GCATC 2 cut(s) 58, 253
MaeI CTAG 2 cut(s) 323, 402
MaeIII GTNAC 2 cut(s) 201, 283
MboII GAAGA 1 cut(s) 176
MfeI CAATTG 3 cut(s) 36, 45, 138
MluCI AATT 4 cut(s) 36, 45, 138, 169
MlyI GAGTC 2 cut(s) 297, 392
MmeI TCCRAC 1 cut(s) 280
MnlI CCTC 1 cut(s) 80
MspI CCGG 2 cut(s) 382, 414
MunI CAATTG 3 cut(s) 36, 45, 138
MwoI GCNNNNNNNGC 1 cut(s) 164
NlaIII CATG 2 cut(s) 247, 421
NmuCI GTSAC 1 cut(s) 283
PfeI GAWTC 2 cut(s) 118, 373
PkrI GCNGC 3 cut(s) 73, 76, 358
PleI GAGTC 2 cut(s) 297, 392
PpsI GAGTC 2 cut(s) 297, 392
PspFI CCCAGC 1 cut(s) 143
RsaI GTAC 1 cut(s) 242
RsaNI GTAC 1 cut(s) 241
SatI GCNGC 3 cut(s) 72, 75, 357
SchI GAGTC 2 cut(s) 297, 392
SetI ASST 6 cut(s) 28, 79, 208, 273, 320, 331
SfaNI GCATC 2 cut(s) 58, 253
Sse9I AATT 4 cut(s) 36, 45, 138, 169
SspI AATATT 1 cut(s) 366
SspMI CTAG 2 cut(s) 323, 402
TasI AATT 4 cut(s) 36, 45, 138, 169
TatI WGTACW 1 cut(s) 240
TfiI GAWTC 2 cut(s) 118, 373
TseFI GTSAC 1 cut(s) 283
TseI GCWGC 3 cut(s) 71, 74, 356
Tsp45I GTSAC 1 cut(s) 283
TspDTI ATGAA 2 cut(s) 36, 260
TspGWI ACGGA 1 cut(s) 80
XagI CCTNNNNNAGG 1 cut(s) 210
XspI CTAG 2 cut(s) 323, 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.