Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000070.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

65052 .. 69825

Gene Structure 4774 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

atgattggtgacgtctacagcagagctgggctcaagctcaatgaggctcaaaacgctttgcaggctctcactgctgacactgagggcttcttggaggtctcggatgaagtcgatgtgctttatgttttccccaaagattatcgagcaaagcttcttgccaaatcgtttcgattgagaattgagcctctgctggagaaagcaaaggattcatgcgagaactcaagaaggttgttacagtgggcattgtgggaggatccaacctttctaacaaagcagcttggaaagacaggtcatgttgttcatgaagaagacgatgaccaaggcgaggtttacattgatgaagctgacatccttaatgaagtcgatttcaatgaggaagatcttcctaatgcagacgaccaagtagttgatatgggttttacgtttttcattgtttttcatttttcaggtcatgttgttcatgaagaagacaatgaccaaggtgaggtttacattgatgaagctgacatccttaacgaagttgatttcgatgaggaagatcttcctgatgcagacgaccaagcagttggtacatcattgtttggctgctggcttgctgccaacatgctgccaacatgctgccgccatgatgccgagcccttcacacgacggttccctacaatcgaccttcatcagacggcgcctcgatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008198 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0016226 GO:0019538 GO:0022607 GO:0031163 GO:0031967 GO:0031974 GO:0031975 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0048037 GO:0051186 GO:0051536 GO:0051537 GO:0051540 GO:0051604 GO:0070013 GO:0071704 GO:0071840 GO:0097428 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

229

Amino Acids

26.1

Weight (kDa)

4.19

Isoelectric Point (pI)

37.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	15
AccB1I	GGYRCC	1 cut(s)	679
AccI	GTMKAC	1 cut(s)	15
AciI	CCGC	1 cut(s)	622
AclWI	GGATC	2 cut(s)	248, 261
AcyI	GRCGYC	2 cut(s)	12, 680
AfaI	GTAC	1 cut(s)	571
AfiI	CCNNNNNNNGG	2 cut(s)	325, 484
AgsI	TTSAA	1 cut(s)	370
AluBI	AGCT	6 cut(s)	26, 37, 151, 277, 344, 503
AluI	AGCT	6 cut(s)	26, 37, 151, 277, 344, 503
Alw26I	GTCTC	1 cut(s)	103
AlwI	GGATC	2 cut(s)	248, 261
ApeKI	GCWGC	5 cut(s)	274, 585, 596, 607, 618
Asp700I	GAANNNNTTC	2 cut(s)	381, 540
AspLEI	GCGC	1 cut(s)	682
AsuHPI	GGTGA	2 cut(s)	20, 494
BamHI	GGATCC	1 cut(s)	253
BanI	GGYRCC	1 cut(s)	679
BanII	GRGCYC	2 cut(s)	33, 639
BbsI	GAAGAC	2 cut(s)	315, 474
BbvI	GCAGC	5 cut(s)	286, 572, 583, 594, 605
BcoDI	GTCTC	1 cut(s)	103
BfmI	CTRYAG	1 cut(s)	16
BfoI	RGCGCY	1 cut(s)	683
BglII	AGATCT	2 cut(s)	379, 538
BisI	GCNGC	6 cut(s)	275, 586, 597, 608, 619, 622
BlsI	GCNGC	6 cut(s)	276, 587, 598, 609, 620, 623
BmiI	GGNNCC	3 cut(s)	255, 653, 681
BmsI	GCATC	2 cut(s)	538, 619
BpiI	GAAGAC	2 cut(s)	315, 474
BplI	GAGNNNNNCTC	2 cut(s)	15, 47
BpmI	CTGGAG	1 cut(s)	212
BpuEI	CTTGAG	2 cut(s)	17, 205
BsaHI	GRCGYC	2 cut(s)	12, 680
BsaI	GGTCTC	1 cut(s)	103
BsaJI	CCNNGG	2 cut(s)	319, 478
Bsc4I	CCNNNNNNNGG	2 cut(s)	325, 484
BseDI	CCNNGG	2 cut(s)	319, 478
BseGI	GGATG	3 cut(s)	109, 348, 507
BseLI	CCNNNNNNNGG	2 cut(s)	325, 484
BseMII	CTCAG	1 cut(s)	72
BseXI	GCAGC	5 cut(s)	286, 572, 583, 594, 605
BseYI	CCCAGC	1 cut(s)	26
BshNI	GGYRCC	1 cut(s)	679
BslI	CCNNNNNNNGG	2 cut(s)	325, 484
BsmAI	GTCTC	1 cut(s)	103
Bso31I	GGTCTC	1 cut(s)	103
Bsp1286I	GDGCHC	2 cut(s)	33, 639
Bsp143I	GATC	3 cut(s)	253, 379, 538
BspACI	CCGC	1 cut(s)	622
BspCNI	CTCAG	1 cut(s)	73
BspHI	TCATGA	2 cut(s)	301, 460
BspLI	GGNNCC	3 cut(s)	255, 653, 681
BspPI	GGATC	2 cut(s)	248, 261
BspT107I	GGYRCC	1 cut(s)	679
BspTNI	GGTCTC	1 cut(s)	103
BssECI	CCNNGG	2 cut(s)	319, 478
BssMI	GATC	3 cut(s)	253, 379, 538
BssNI	GRCGYC	2 cut(s)	12, 680
BssT1I	CCWWGG	2 cut(s)	319, 478
Bst4CI	ACNGT	2 cut(s)	237, 651
BstACI	GRCGYC	2 cut(s)	12, 680
BstC8I	GCNNGC	3 cut(s)	63, 590, 594
BstDEI	CTNAG	1 cut(s)	81
BstF5I	GGATG	3 cut(s)	109, 348, 507
BstH2I	RGCGCY	1 cut(s)	683
BstHHI	GCGC	1 cut(s)	682
BstKTI	GATC	3 cut(s)	256, 382, 541
BstMAI	GTCTC	1 cut(s)	103
BstMBI	GATC	3 cut(s)	253, 379, 538
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 62, 71
BstNSI	RCATGY	2 cut(s)	607, 618
BstSFI	CTRYAG	1 cut(s)	16
BstV1I	GCAGC	5 cut(s)	286, 572, 583, 594, 605
BstV2I	GAAGAC	2 cut(s)	315, 474
BstX2I	RGATCY	3 cut(s)	253, 379, 538
BstXI	CCANNNNNNTGG	1 cut(s)	566
BstYI	RGATCY	3 cut(s)	253, 379, 538
BtsCI	GGATG	3 cut(s)	109, 348, 507
BtsI	GCAGTG	1 cut(s)	69
BtsIMutI	CAGTG	3 cut(s)	69, 78, 242
Cac8I	GCNNGC	3 cut(s)	63, 590, 594
CciI	TCATGA	2 cut(s)	301, 460
CfoI	GCGC	1 cut(s)	682
Csp6I	GTAC	1 cut(s)	570
CviAII	CATG	8 cut(s)	210, 293, 302, 452, 461, 604, 615, 626
CviQI	GTAC	1 cut(s)	570
DdeI	CTNAG	1 cut(s)	81
DinI	GGCGCC	1 cut(s)	681
DpnI	GATC	3 cut(s)	255, 381, 540
DpnII	GATC	3 cut(s)	253, 379, 538
Eco130I	CCWWGG	2 cut(s)	319, 478
Eco24I	GRGCYC	2 cut(s)	33, 639
Eco31I	GGTCTC	1 cut(s)	103
EcoT14I	CCWWGG	2 cut(s)	319, 478
EcoT38I	GRGCYC	2 cut(s)	33, 639
EgeI	GGCGCC	1 cut(s)	681
EheI	GGCGCC	1 cut(s)	681
ErhI	CCWWGG	2 cut(s)	319, 478
FaeI	CATG	8 cut(s)	213, 296, 305, 455, 464, 607, 618, 629
FatI	CATG	8 cut(s)	209, 292, 301, 451, 460, 603, 614, 625
FblI	GTMKAC	1 cut(s)	15
Fnu4HI	GCNGC	6 cut(s)	275, 586, 597, 608, 619, 622
FokI	GGATG	3 cut(s)	116, 335, 494
FriOI	GRGCYC	2 cut(s)	33, 639
Fsp4HI	GCNGC	6 cut(s)	275, 586, 597, 608, 619, 622
GlaI	GCGC	1 cut(s)	681
GluI	GCNGC	6 cut(s)	275, 586, 597, 608, 619, 622
GsaI	CCCAGC	1 cut(s)	30
GsuI	CTGGAG	1 cut(s)	212
HaeII	RGCGCY	1 cut(s)	683
HhaI	GCGC	1 cut(s)	682
Hin1I	GRCGYC	2 cut(s)	12, 680
Hin1II	CATG	8 cut(s)	213, 296, 305, 455, 464, 607, 618, 629
Hin6I	GCGC	1 cut(s)	680
HinP1I	GCGC	1 cut(s)	680
HindIII	AAGCTT	1 cut(s)	149
HinfI	GANTC	1 cut(s)	206
HphI	GGTGA	2 cut(s)	20, 494
Hpy166II	GTNNAC	3 cut(s)	16, 331, 490
Hpy188I	TCNGA	2 cut(s)	103, 675
Hpy188III	TCNNGA	4 cut(s)	222, 302, 461, 545
Hpy8I	GTNNAC	3 cut(s)	16, 331, 490
Hpy99I	CGWCG	1 cut(s)	651
HpyAV	CCTTC	3 cut(s)	219, 649, 677
HpyCH4III	ACNGT	2 cut(s)	237, 651
HpyCH4IV	ACGT	2 cut(s)	12, 422
HpyCH4V	TGCA	3 cut(s)	61, 392, 551
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 62, 71
HpyF3I	CTNAG	1 cut(s)	81
HpySE526I	ACGT	2 cut(s)	12, 422
Hsp92I	GRCGYC	2 cut(s)	12, 680
Hsp92II	CATG	8 cut(s)	213, 296, 305, 455, 464, 607, 618, 629
HspAI	GCGC	1 cut(s)	680
KasI	GGCGCC	1 cut(s)	679
Kzo9I	GATC	3 cut(s)	253, 379, 538
LpnPI	CCDG	7 cut(s)	12, 47, 176, 273, 432, 558, 574
Lsp1109I	GCAGC	5 cut(s)	286, 572, 583, 594, 605
LweI	GCATC	2 cut(s)	538, 619
MaeII	ACGT	2 cut(s)	12, 422
MaeIII	GTNAC	2 cut(s)	8, 231
MalI	GATC	3 cut(s)	255, 381, 540
MboI	GATC	3 cut(s)	253, 379, 538
MboII	GAAGA	8 cut(s)	317, 320, 374, 389, 476, 479, 533, 548
MflI	RGATCY	3 cut(s)	253, 379, 538
MhlI	GDGCHC	2 cut(s)	33, 639
MluCI	AATT	1 cut(s)	177
Mly113I	GGCGCC	1 cut(s)	680
MmeI	TCCRAC	1 cut(s)	281
MnlI	CCTC	9 cut(s)	37, 76, 88, 195, 244, 319, 367, 478, 526
MroXI	GAANNNNTTC	2 cut(s)	381, 540
MseI	TTAA	2 cut(s)	354, 513
MwoI	GCNNNNNNNGC	3 cut(s)	53, 62, 71
NarI	GGCGCC	1 cut(s)	680
NdeII	GATC	3 cut(s)	253, 379, 538
NlaIII	CATG	8 cut(s)	213, 296, 305, 455, 464, 607, 618, 629
NlaIV	GGNNCC	3 cut(s)	255, 653, 681
NmeAIII	GCCGAG	1 cut(s)	658
NmuCI	GTSAC	1 cut(s)	8
NspI	RCATGY	2 cut(s)	607, 618
PagI	TCATGA	2 cut(s)	301, 460
PdmI	GAANNNNTTC	2 cut(s)	381, 540
PfeI	GAWTC	1 cut(s)	206
PkrI	GCNGC	6 cut(s)	276, 587, 598, 609, 620, 623
PluTI	GGCGCC	1 cut(s)	683
PspFI	CCCAGC	1 cut(s)	26
PspN4I	GGNNCC	3 cut(s)	255, 653, 681
PsuI	RGATCY	3 cut(s)	253, 379, 538
RsaI	GTAC	1 cut(s)	571
RsaNI	GTAC	1 cut(s)	570
SaqAI	TTAA	2 cut(s)	354, 513
SatI	GCNGC	6 cut(s)	275, 586, 597, 608, 619, 622
Sau3AI	GATC	3 cut(s)	253, 379, 538
SduI	GDGCHC	2 cut(s)	33, 639
SfaNI	GCATC	2 cut(s)	538, 619
SfcI	CTRYAG	1 cut(s)	16
SfoI	GGCGCC	1 cut(s)	681
SmlI	CTYRAG	2 cut(s)	32, 220
SmoI	CTYRAG	2 cut(s)	32, 220
Sse9I	AATT	1 cut(s)	177
SsiI	CCGC	1 cut(s)	622
SspDI	GGCGCC	1 cut(s)	679
StyI	CCWWGG	2 cut(s)	319, 478
TaaI	ACNGT	2 cut(s)	237, 651
TaiI	ACGT	2 cut(s)	15, 425
TaqI	TCGA	7 cut(s)	111, 142, 169, 363, 528, 663, 685
TasI	AATT	1 cut(s)	177
TauI	GCSGC	1 cut(s)	624
TfiI	GAWTC	1 cut(s)	206
Tru1I	TTAA	2 cut(s)	354, 513
Tru9I	TTAA	2 cut(s)	354, 513
TscAI	CASTG	3 cut(s)	76, 85, 242
TseFI	GTSAC	1 cut(s)	8
TseI	GCWGC	5 cut(s)	274, 585, 596, 607, 618
Tsp45I	GTSAC	1 cut(s)	8
TspRI	CASTG	3 cut(s)	76, 85, 242
XceI	RCATGY	2 cut(s)	607, 618
XmiI	GTMKAC	1 cut(s)	15
XmnI	GAANNNNTTC	2 cut(s)	381, 540
ZraI	GACGTC	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.