Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000076.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

187802 .. 189515

Gene Structure 1714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

atgaaggggatcaaggggcgtctcaatcctttgctgtcggcttgcatcggcgacatgatgatggccaccgtgaagaaggaaaagccggatctgaggaaaaaggttgctgaaggcctagcttgtggaactcctcatatgatcagtgctacgattgaaggccttgctcgagattctcaattttatggattcggatgtgattccaacaccaaagattacaagttcatactcagcggcaactcgtcgcttgattctccggccaagtccaacaaaaatggccatccttccctaaagaggttcatggaggattttcaaagacctaggttatatttttctgaatatggccaggagtttttactagacggagttgtacattggatagagcatggtaaaacgaggtcaacaatcatggcttttgatctggcggagcagaaatctcatctcattcactgtcccattttgacaacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0015934 GO:0019843 GO:0022625 GO:0022626 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0070180 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L14

Protein Analysis

155

Amino Acids

17.34

Weight (kDa)

8.88

Isoelectric Point (pI)

44.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	231, 422
AclWI	GGATC	2 cut(s)	17, 96
AcoI	YGGCCR	4 cut(s)	63, 255, 274, 340
AcuI	CTGAAG	1 cut(s)	129
AcyI	GRCGYC	1 cut(s)	19
AfaI	GTAC	1 cut(s)	369
AfiI	CCNNNNNNNGG	1 cut(s)	291
AgsI	TTSAA	2 cut(s)	155, 311
AjnI	CCWGG	1 cut(s)	342
AluBI	AGCT	1 cut(s)	119
AluI	AGCT	1 cut(s)	119
Alw26I	GTCTC	1 cut(s)	26
AlwI	GGATC	2 cut(s)	17, 96
Ama87I	CYCGRG	1 cut(s)	165
AoxI	GGCC	6 cut(s)	63, 112, 157, 255, 274, 340
AspA2I	CCTAGG	1 cut(s)	317
AvaI	CYCGRG	1 cut(s)	165
AvrII	CCTAGG	1 cut(s)	317
BalI	TGGCCA	3 cut(s)	65, 276, 342
BccI	CCATC	2 cut(s)	55, 285
BciT130I	CCWGG	1 cut(s)	344
BclI	TGATCA	1 cut(s)	138
BcoDI	GTCTC	1 cut(s)	26
BfaI	CTAG	3 cut(s)	116, 318, 356
BisI	GCNGC	1 cut(s)	232
BlnI	CCTAGG	1 cut(s)	317
BlsI	GCNGC	1 cut(s)	233
Bme1390I	CCNGG	1 cut(s)	344
BmeT110I	CYCGRG	1 cut(s)	165
BmrFI	CCNGG	1 cut(s)	344
BmsI	GCATC	1 cut(s)	54
BsaHI	GRCGYC	1 cut(s)	19
BsaJI	CCNNGG	1 cut(s)	317
Bsc4I	CCNNNNNNNGG	1 cut(s)	291
BseBI	CCWGG	1 cut(s)	344
BseDI	CCNNGG	1 cut(s)	317
BseGI	GGATG	2 cut(s)	197, 277
BseLI	CCNNNNNNNGG	1 cut(s)	291
BseMII	CTCAG	2 cut(s)	83, 241
BseRI	GAGGAG	1 cut(s)	120
BshFI	GGCC	6 cut(s)	65, 114, 159, 257, 276, 342
BsiHKCI	CYCGRG	1 cut(s)	165
BsiSI	CCGG	2 cut(s)	86, 254
BslFI	GGGAC	1 cut(s)	435
BslI	CCNNNNNNNGG	1 cut(s)	291
BsmAI	GTCTC	1 cut(s)	26
BsmBI	CGTCTC	1 cut(s)	26
BsmFI	GGGAC	1 cut(s)	435
BsnI	GGCC	6 cut(s)	65, 114, 159, 257, 276, 342
BsoBI	CYCGRG	1 cut(s)	165
Bsp1407I	TGTACA	1 cut(s)	367
Bsp143I	GATC	4 cut(s)	9, 88, 138, 415
BspACI	CCGC	2 cut(s)	231, 422
BspANI	GGCC	6 cut(s)	65, 114, 159, 257, 276, 342
BspCNI	CTCAG	2 cut(s)	84, 240
BspPI	GGATC	2 cut(s)	17, 96
BsrGI	TGTACA	1 cut(s)	367
BssECI	CCNNGG	1 cut(s)	317
BssMI	GATC	4 cut(s)	9, 88, 138, 415
BssNI	GRCGYC	1 cut(s)	19
BssT1I	CCWWGG	1 cut(s)	317
Bst2UI	CCWGG	1 cut(s)	344
Bst4CI	ACNGT	2 cut(s)	70, 449
BstACI	GRCGYC	1 cut(s)	19
BstAUI	TGTACA	1 cut(s)	367
BstC8I	GCNNGC	1 cut(s)	43
BstDEI	CTNAG	2 cut(s)	92, 227
BstF5I	GGATG	2 cut(s)	197, 277
BstKTI	GATC	4 cut(s)	12, 91, 141, 418
BstMAI	GTCTC	1 cut(s)	26
BstMBI	GATC	4 cut(s)	9, 88, 138, 415
BstNI	CCWGG	1 cut(s)	344
BstSCI	CCNGG	1 cut(s)	342
BstX2I	RGATCY	1 cut(s)	88
BstYI	RGATCY	1 cut(s)	88
BsuRI	GGCC	6 cut(s)	65, 114, 159, 257, 276, 342
BtsCI	GGATG	2 cut(s)	197, 277
BtsIMutI	CAGTG	2 cut(s)	148, 445
Cac8I	GCNNGC	1 cut(s)	43
CseI	GACGC	1 cut(s)	8
Csp6I	GTAC	1 cut(s)	368
CviAII	CATG	5 cut(s)	55, 298, 383, 406, 465
CviQI	GTAC	1 cut(s)	368
DdeI	CTNAG	2 cut(s)	92, 227
DpnI	GATC	4 cut(s)	11, 90, 140, 417
DpnII	GATC	4 cut(s)	9, 88, 138, 415
EaeI	YGGCCR	4 cut(s)	63, 255, 274, 340
EciI	GGCGGA	1 cut(s)	437
Eco130I	CCWWGG	1 cut(s)	317
Eco147I	AGGCCT	2 cut(s)	114, 159
Eco57I	CTGAAG	1 cut(s)	129
Eco88I	CYCGRG	1 cut(s)	165
EcoRII	CCWGG	1 cut(s)	342
EcoT14I	CCWWGG	1 cut(s)	317
ErhI	CCWWGG	1 cut(s)	317
Esp3I	CGTCTC	1 cut(s)	26
FaeI	CATG	5 cut(s)	58, 301, 386, 409, 468
FaqI	GGGAC	1 cut(s)	435
FatI	CATG	5 cut(s)	54, 297, 382, 405, 464
FauNDI	CATATG	1 cut(s)	135
FbaI	TGATCA	1 cut(s)	138
Fnu4HI	GCNGC	1 cut(s)	232
FokI	GGATG	2 cut(s)	204, 264
Fsp4HI	GCNGC	1 cut(s)	232
FspBI	CTAG	3 cut(s)	116, 318, 356
GluI	GCNGC	1 cut(s)	232
HaeIII	GGCC	6 cut(s)	65, 114, 159, 257, 276, 342
HapII	CCGG	2 cut(s)	86, 254
HgaI	GACGC	1 cut(s)	8
Hin1I	GRCGYC	1 cut(s)	19
Hin1II	CATG	5 cut(s)	58, 301, 386, 409, 468
HincII	GTYRAC	1 cut(s)	399
HindII	GTYRAC	1 cut(s)	399
HinfI	GANTC	4 cut(s)	170, 186, 197, 248
HpaII	CCGG	2 cut(s)	86, 254
Hpy166II	GTNNAC	1 cut(s)	399
Hpy188I	TCNGA	3 cut(s)	93, 191, 334
Hpy188III	TCNNGA	1 cut(s)	167
Hpy8I	GTNNAC	1 cut(s)	399
Hpy99I	CGWCG	1 cut(s)	244
HpyAV	CCTTC	4 cut(s)	70, 104, 149, 291
HpyCH4III	ACNGT	2 cut(s)	70, 449
HpyCH4V	TGCA	1 cut(s)	45
HpyF3I	CTNAG	2 cut(s)	92, 227
Hsp92I	GRCGYC	1 cut(s)	19
Hsp92II	CATG	5 cut(s)	58, 301, 386, 409, 468
Ksp22I	TGATCA	1 cut(s)	138
Kzo9I	GATC	4 cut(s)	9, 88, 138, 415
LmnI	GCTCC	1 cut(s)	424
LpnPI	CCDG	5 cut(s)	99, 267, 329, 356, 404
LweI	GCATC	1 cut(s)	54
MaeI	CTAG	3 cut(s)	116, 318, 356
MalI	GATC	4 cut(s)	11, 90, 140, 417
MboI	GATC	4 cut(s)	9, 88, 138, 415
MboII	GAAGA	1 cut(s)	85
MflI	RGATCY	1 cut(s)	88
MlsI	TGGCCA	3 cut(s)	65, 276, 342
MluCI	AATT	1 cut(s)	176
MluNI	TGGCCA	3 cut(s)	65, 276, 342
MmeI	TCCRAC	2 cut(s)	225, 288
MnlI	CCTC	5 cut(s)	87, 141, 285, 295, 387
Mox20I	TGGCCA	3 cut(s)	65, 276, 342
MscI	TGGCCA	3 cut(s)	65, 276, 342
MslI	CAYNNNNRTG	1 cut(s)	59
Msp20I	TGGCCA	3 cut(s)	65, 276, 342
MspA1I	CMGCKG	1 cut(s)	231
MspI	CCGG	2 cut(s)	86, 254
MspR9I	CCNGG	1 cut(s)	344
MvaI	CCWGG	1 cut(s)	344
NdeI	CATATG	1 cut(s)	135
NdeII	GATC	4 cut(s)	9, 88, 138, 415
NlaIII	CATG	5 cut(s)	58, 301, 386, 409, 468
PaeR7I	CTCGAG	1 cut(s)	165
PceI	AGGCCT	2 cut(s)	114, 159
PfeI	GAWTC	4 cut(s)	170, 186, 197, 248
PkrI	GCNGC	1 cut(s)	233
Psp6I	CCWGG	1 cut(s)	342
PspGI	CCWGG	1 cut(s)	342
PsuI	RGATCY	1 cut(s)	88
RsaI	GTAC	1 cut(s)	369
RsaNI	GTAC	1 cut(s)	368
RseI	CAYNNNNRTG	1 cut(s)	59
SatI	GCNGC	1 cut(s)	232
Sau3AI	GATC	4 cut(s)	9, 88, 138, 415
ScrFI	CCNGG	1 cut(s)	344
SetI	ASST	6 cut(s)	105, 121, 296, 319, 323, 398
SfaNI	GCATC	1 cut(s)	54
Sfr274I	CTCGAG	1 cut(s)	165
SlaI	CTCGAG	1 cut(s)	165
SmiMI	CAYNNNNRTG	1 cut(s)	59
SmlI	CTYRAG	1 cut(s)	165
SmoI	CTYRAG	1 cut(s)	165
Sse9I	AATT	1 cut(s)	176
SseBI	AGGCCT	2 cut(s)	114, 159
SsiI	CCGC	2 cut(s)	231, 422
SspMI	CTAG	3 cut(s)	116, 318, 356
StuI	AGGCCT	2 cut(s)	114, 159
StyD4I	CCNGG	1 cut(s)	342
StyI	CCWWGG	1 cut(s)	317
TaaI	ACNGT	2 cut(s)	70, 449
TaqI	TCGA	1 cut(s)	166
TasI	AATT	1 cut(s)	176
TatI	WGTACW	1 cut(s)	367
TauI	GCSGC	1 cut(s)	234
TfiI	GAWTC	4 cut(s)	170, 186, 197, 248
TscAI	CASTG	2 cut(s)	148, 452
TspDTI	ATGAA	3 cut(s)	17, 211, 286
TspGWI	ACGGA	1 cut(s)	375
TspRI	CASTG	2 cut(s)	148, 452
XhoI	CTCGAG	1 cut(s)	165
XmaJI	CCTAGG	1 cut(s)	317
XspI	CTAG	3 cut(s)	116, 318, 356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.