Rmu_sc0000078.1_g000006

Pathogenesis-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000078.1
N/A
Physical Location & Seq
Forward (+)
14850 .. 16796
1947 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 516 bp
atgggaagtgcttatgcccaaagtgcttctgatgtgagatccacattccaccactacaatccgcaggataacaacggggacttgcttgcagtaggtgccttctgcgccacatttgatgaggattggcccttcaaatggagcagcagatatggatggacagccttctgcggacctaatggccctagtggaggagacgcttgcggaaaatgcctaccagtaattacctccctggctgcacacagcacctgtgcaactttgccggatcccatcgctgcatcccaactcctcaacccgcgtcaccgcatccctcgccgccatcgtcacctagttgcaagctgcgccgccacgatccaccgtcaagccccaccatcatcgatgacctgctgtgtacaaatgctcaccgcatccaagtcgtcgtccggtgctcgctgtcaaaatcatcagccaaattttgagacaacacccctctctcagagctcccgagcaagtagccttcaaacacccgtccggcattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Barwin

Protein Analysis

171

Amino Acids

18.4

Weight (kDa)

8.83

Isoelectric Point (pI)

57.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Barwin PF00967 8 - 79 1.4e-23 Barwin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 389
AccB1I GGYRCC 1 cut(s) 95
AccII CGCG 1 cut(s) 295
AciI CCGC 8 cut(s) 62, 168, 201, 293, 301, 313, 342, 402
AclWI GGATC 4 cut(s) 33, 257, 270, 343
AcsI RAATTY 1 cut(s) 448
AfaI GTAC 1 cut(s) 390
AfiI CCNNNNNNNGG 2 cut(s) 135, 188
AgsI TTSAA 2 cut(s) 133, 497
AjnI CCWGG 1 cut(s) 228
AluBI AGCT 2 cut(s) 336, 477
AluI AGCT 2 cut(s) 336, 477
Alw21I GWGCWC 2 cut(s) 427, 479
Alw26I GTCTC 2 cut(s) 186, 449
AlwI GGATC 4 cut(s) 33, 257, 270, 343
AlwNI CAGNNNCTG 1 cut(s) 246
Ama87I CYCGRG 1 cut(s) 480
AoxI GGCC 2 cut(s) 125, 178
ApeKI GCWGC 4 cut(s) 141, 233, 272, 336
ApoI RAATTY 1 cut(s) 448
AspLEI GCGC 2 cut(s) 107, 341
AspS9I GGNCC 3 cut(s) 126, 170, 179
AsuHPI GGTGA 3 cut(s) 290, 314, 391
AvaI CYCGRG 1 cut(s) 480
AvaII GGWCC 1 cut(s) 170
BamHI GGATCC 1 cut(s) 262
BanI GGYRCC 1 cut(s) 95
BanII GRGCYC 1 cut(s) 479
Bbv12I GWGCWC 2 cut(s) 427, 479
BbvI GCAGC 4 cut(s) 153, 220, 259, 323
BccI CCATC 4 cut(s) 147, 275, 324, 376
BcgI CGANNNNNNTGC 2 cut(s) 393, 427
BciT130I CCWGG 1 cut(s) 230
BcoDI GTCTC 2 cut(s) 186, 449
BfaI CTAG 2 cut(s) 183, 326
BfuAI ACCTGC 1 cut(s) 389
BisI GCNGC 6 cut(s) 142, 234, 273, 313, 337, 342
BlsI GCNGC 6 cut(s) 143, 235, 274, 314, 338, 343
Bme1390I CCNGG 1 cut(s) 230
Bme18I GGWCC 1 cut(s) 170
BmeT110I CYCGRG 1 cut(s) 480
BmgT120I GGNCC 3 cut(s) 126, 170, 179
BmiI GGNNCC 2 cut(s) 97, 264
BmrFI CCNGG 1 cut(s) 230
BmsI GCATC 3 cut(s) 284, 312, 413
Bsa29I ATCGAT 1 cut(s) 374
BsaJI CCNNGG 1 cut(s) 228
BsaWI WCCGGW 1 cut(s) 419
Bsc4I CCNNNNNNNGG 2 cut(s) 135, 188
Bse1I ACTGG 1 cut(s) 215
BseBI CCWGG 1 cut(s) 230
BseCI ATCGAT 1 cut(s) 374
BseDI CCNNGG 1 cut(s) 228
BseGI GGATG 4 cut(s) 158, 275, 303, 404
BseLI CCNNNNNNNGG 2 cut(s) 135, 188
BseMII CTCAG 1 cut(s) 485
BseNI ACTGG 1 cut(s) 215
BseRI GAGGAG 2 cut(s) 204, 275
BseXI GCAGC 4 cut(s) 153, 220, 259, 323
BsgI GTGCAG 1 cut(s) 219
Bsh1236I CGCG 1 cut(s) 295
BshFI GGCC 2 cut(s) 127, 180
BshNI GGYRCC 1 cut(s) 95
BshVI ATCGAT 1 cut(s) 374
BsiHKAI GWGCWC 2 cut(s) 427, 479
BsiHKCI CYCGRG 1 cut(s) 480
BsiSI CCGG 3 cut(s) 260, 420, 508
BslFI GGGAC 1 cut(s) 92
BslI CCNNNNNNNGG 2 cut(s) 135, 188
BsmAI GTCTC 2 cut(s) 186, 449
BsmBI CGTCTC 1 cut(s) 186
BsmFI GGGAC 1 cut(s) 92
BsnI GGCC 2 cut(s) 127, 180
BsoBI CYCGRG 1 cut(s) 480
Bsp1286I GDGCHC 2 cut(s) 427, 479
Bsp1407I TGTACA 1 cut(s) 388
Bsp143I GATC 3 cut(s) 38, 262, 348
BspACI CCGC 8 cut(s) 62, 168, 201, 293, 301, 313, 342, 402
BspANI GGCC 2 cut(s) 127, 180
BspCNI CTCAG 1 cut(s) 484
BspDI ATCGAT 1 cut(s) 374
BspFNI CGCG 1 cut(s) 295
BspLI GGNNCC 2 cut(s) 97, 264
BspMI ACCTGC 1 cut(s) 389
BspPI GGATC 4 cut(s) 33, 257, 270, 343
BspT107I GGYRCC 1 cut(s) 95
BsrGI TGTACA 1 cut(s) 388
BsrI ACTGG 1 cut(s) 215
BssECI CCNNGG 1 cut(s) 228
BssMI GATC 3 cut(s) 38, 262, 348
Bst2UI CCWGG 1 cut(s) 230
Bst4CI ACNGT 1 cut(s) 356
BstAPI GCANNNNNTGC 1 cut(s) 95
BstAUI TGTACA 1 cut(s) 388
BstC8I GCNNGC 4 cut(s) 87, 199, 334, 427
BstDEI CTNAG 1 cut(s) 471
BstENI CCTNNNNNAGG 1 cut(s) 186
BstF5I GGATG 4 cut(s) 158, 275, 303, 404
BstFNI CGCG 1 cut(s) 295
BstHHI GCGC 2 cut(s) 107, 341
BstKTI GATC 3 cut(s) 41, 265, 351
BstMAI GTCTC 2 cut(s) 186, 449
BstMBI GATC 3 cut(s) 38, 262, 348
BstMWI GCNNNNNNNGC 6 cut(s) 23, 95, 104, 207, 309, 338
BstNI CCWGG 1 cut(s) 230
BstSCI CCNGG 1 cut(s) 228
BstUI CGCG 1 cut(s) 295
BstV1I GCAGC 4 cut(s) 153, 220, 259, 323
BstX2I RGATCY 2 cut(s) 38, 262
BstYI RGATCY 2 cut(s) 38, 262
Bsu15I ATCGAT 1 cut(s) 374
BsuRI GGCC 2 cut(s) 127, 180
BsuTUI ATCGAT 1 cut(s) 374
BtgZI GCGATG 1 cut(s) 253
BtsCI GGATG 4 cut(s) 158, 275, 303, 404
BveI ACCTGC 1 cut(s) 389
Cac8I GCNNGC 4 cut(s) 87, 199, 334, 427
CaiI CAGNNNCTG 1 cut(s) 246
CfoI GCGC 2 cut(s) 107, 341
Cfr13I GGNCC 3 cut(s) 126, 170, 179
ClaI ATCGAT 1 cut(s) 374
CseI GACGC 2 cut(s) 203, 284
Csp6I GTAC 1 cut(s) 389
CviJI RGCY 9 cut(s) 127, 161, 180, 233, 336, 362, 445, 477, 492
CviKI_1 RGCY 9 cut(s) 127, 161, 180, 233, 336, 362, 445, 477, 492
CviQI GTAC 1 cut(s) 389
DdeI CTNAG 1 cut(s) 471
DpnI GATC 3 cut(s) 40, 264, 350
DpnII GATC 3 cut(s) 38, 262, 348
Ecl136II GAGCTC 1 cut(s) 477
Eco24I GRGCYC 1 cut(s) 479
Eco47I GGWCC 1 cut(s) 170
Eco53kI GAGCTC 1 cut(s) 477
Eco88I CYCGRG 1 cut(s) 480
EcoICRI GAGCTC 1 cut(s) 477
EcoNI CCTNNNNNAGG 1 cut(s) 186
EcoRII CCWGG 1 cut(s) 228
EcoT38I GRGCYC 1 cut(s) 479
Esp3I CGTCTC 1 cut(s) 186
FaiI YATR 2 cut(s) 15, 150
FaqI GGGAC 1 cut(s) 92
FauI CCCGC 1 cut(s) 300
Fnu4HI GCNGC 6 cut(s) 142, 234, 273, 313, 337, 342
FokI GGATG 4 cut(s) 165, 262, 290, 391
FriOI GRGCYC 1 cut(s) 479
Fsp4HI GCNGC 6 cut(s) 142, 234, 273, 313, 337, 342
FspBI CTAG 2 cut(s) 183, 326
GlaI GCGC 2 cut(s) 106, 340
GluI GCNGC 6 cut(s) 142, 234, 273, 313, 337, 342
HaeIII GGCC 2 cut(s) 127, 180
HapII CCGG 3 cut(s) 260, 420, 508
HgaI GACGC 2 cut(s) 203, 284
HhaI GCGC 2 cut(s) 107, 341
Hin6I GCGC 2 cut(s) 105, 339
HinP1I GCGC 2 cut(s) 105, 339
HpaII CCGG 3 cut(s) 260, 420, 508
HphI GGTGA 3 cut(s) 290, 314, 391
Hpy166II GTNNAC 1 cut(s) 389
Hpy188I TCNGA 2 cut(s) 31, 474
Hpy188III TCNNGA 1 cut(s) 480
Hpy8I GTNNAC 1 cut(s) 389
Hpy99I CGWCG 1 cut(s) 418
HpyAV CCTTC 4 cut(s) 109, 139, 172, 503
HpyCH4III ACNGT 1 cut(s) 356
HpyCH4V TGCA 5 cut(s) 89, 236, 251, 275, 332
HpyF10VI GCNNNNNNNGC 6 cut(s) 23, 95, 104, 207, 309, 338
HpyF3I CTNAG 1 cut(s) 471
HspAI GCGC 2 cut(s) 105, 339
Kzo9I GATC 3 cut(s) 38, 262, 348
LmnI GCTCC 2 cut(s) 138, 482
LpnPI CCDG 8 cut(s) 50, 215, 228, 242, 259, 273, 394, 433
Lsp1109I GCAGC 4 cut(s) 153, 220, 259, 323
LweI GCATC 3 cut(s) 284, 312, 413
MaeI CTAG 2 cut(s) 183, 326
MaeIII GTNAC 2 cut(s) 296, 320
MalI GATC 3 cut(s) 40, 264, 350
MboI GATC 3 cut(s) 38, 262, 348
MflI RGATCY 2 cut(s) 38, 262
MhlI GDGCHC 2 cut(s) 427, 479
MluCI AATT 2 cut(s) 219, 448
MnlI CCTC 6 cut(s) 112, 182, 235, 296, 318, 476
MspI CCGG 3 cut(s) 260, 420, 508
MspR9I CCNGG 1 cut(s) 230
MvaI CCWGG 1 cut(s) 230
MvnI CGCG 1 cut(s) 295
MwoI GCNNNNNNNGC 6 cut(s) 23, 95, 104, 207, 309, 338
NdeII GATC 3 cut(s) 38, 262, 348
NlaIV GGNNCC 2 cut(s) 97, 264
NmuCI GTSAC 2 cut(s) 296, 320
PcsI WCGNNNNNNNCGW 1 cut(s) 316
PkrI GCNGC 6 cut(s) 143, 235, 274, 314, 338, 343
Psp124BI GAGCTC 1 cut(s) 479
Psp6I CCWGG 1 cut(s) 228
PspGI CCWGG 1 cut(s) 228
PspN4I GGNNCC 2 cut(s) 97, 264
PspPI GGNCC 3 cut(s) 126, 170, 179
PstNI CAGNNNCTG 1 cut(s) 246
PsuI RGATCY 2 cut(s) 38, 262
RsaI GTAC 1 cut(s) 390
RsaNI GTAC 1 cut(s) 389
SacI GAGCTC 1 cut(s) 479
SatI GCNGC 6 cut(s) 142, 234, 273, 313, 337, 342
Sau3AI GATC 3 cut(s) 38, 262, 348
Sau96I GGNCC 3 cut(s) 126, 170, 179
ScrFI CCNGG 1 cut(s) 230
SduI GDGCHC 2 cut(s) 427, 479
SetI ASST 8 cut(s) 97, 175, 227, 248, 327, 338, 383, 479
SfaNI GCATC 3 cut(s) 284, 312, 413
SinI GGWCC 1 cut(s) 170
Sse9I AATT 2 cut(s) 219, 448
SsiI CCGC 8 cut(s) 62, 168, 201, 293, 301, 313, 342, 402
SspMI CTAG 2 cut(s) 183, 326
SstI GAGCTC 1 cut(s) 479
StyD4I CCNGG 1 cut(s) 228
TaaI ACNGT 1 cut(s) 356
TaqI TCGA 1 cut(s) 374
TasI AATT 2 cut(s) 219, 448
TatI WGTACW 1 cut(s) 388
TauI GCSGC 2 cut(s) 315, 344
TseFI GTSAC 2 cut(s) 296, 320
TseI GCWGC 4 cut(s) 141, 233, 272, 336
Tsp45I GTSAC 2 cut(s) 296, 320
VpaK11BI GGWCC 1 cut(s) 170
XagI CCTNNNNNAGG 1 cut(s) 186
XapI RAATTY 1 cut(s) 448
XspI CTAG 2 cut(s) 183, 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.