Rmu_sc0000078.1_g000009

Pathogenesis-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000078.1
N/A
Physical Location & Seq
Forward (+)
42871 .. 43326
456 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 264 bp
atgcttctgctacttctaatcaggtatggatggaccgccttctgcggacctgaaggccctagcggagcagatgcctgcggaaaatgcctactggtgacgaacatggggacaggagctcaggaaatagtgagaattatcgatcagtgcagcaatggaggtttggatttggatgtgaatgtgttttcccagatagacactgatggaagaggctatgcacaaggcgaccttattgtcaactacgactttgtggactgcggcgactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Barwin

Protein Analysis

87

Amino Acids

9.25

Weight (kDa)

4.05

Isoelectric Point (pI)

13.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Barwin PF00967 6 - 85 6.5e-36 Barwin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 230
AciI CCGC 5 cut(s) 36, 45, 63, 78, 255
AcuI CTGAAG 1 cut(s) 72
AluBI AGCT 1 cut(s) 116
AluI AGCT 1 cut(s) 116
Alw21I GWGCWC 1 cut(s) 118
AoxI GGCC 1 cut(s) 55
ApeKI GCWGC 1 cut(s) 147
AspS9I GGNCC 3 cut(s) 33, 47, 56
AsuHPI GGTGA 1 cut(s) 106
AvaII GGWCC 2 cut(s) 33, 47
BanII GRGCYC 1 cut(s) 118
Bbv12I GWGCWC 1 cut(s) 118
BbvI GCAGC 1 cut(s) 159
BccI CCATC 2 cut(s) 24, 194
BfaI CTAG 1 cut(s) 60
BisI GCNGC 2 cut(s) 148, 256
BlsI GCNGC 2 cut(s) 149, 257
Bme18I GGWCC 2 cut(s) 33, 47
BmgT120I GGNCC 3 cut(s) 33, 47, 56
BmsI GCATC 1 cut(s) 61
Bpu10I CCTNAGC 1 cut(s) 117
Bsa29I ATCGAT 1 cut(s) 138
Bse1I ACTGG 1 cut(s) 96
Bse3DI GCAATG 1 cut(s) 157
BseCI ATCGAT 1 cut(s) 138
BseGI GGATG 2 cut(s) 35, 175
BseMI GCAATG 1 cut(s) 157
BseMII CTCAG 1 cut(s) 131
BseNI ACTGG 1 cut(s) 96
BseXI GCAGC 1 cut(s) 159
BsgI GTGCAG 1 cut(s) 166
BshFI GGCC 1 cut(s) 57
BshVI ATCGAT 1 cut(s) 138
BsiHKAI GWGCWC 1 cut(s) 118
BslFI GGGAC 1 cut(s) 121
BsmFI GGGAC 1 cut(s) 121
BsnI GGCC 1 cut(s) 57
Bsp1286I GDGCHC 1 cut(s) 118
Bsp143I GATC 1 cut(s) 139
BspACI CCGC 5 cut(s) 36, 45, 63, 78, 255
BspANI GGCC 1 cut(s) 57
BspCNI CTCAG 1 cut(s) 130
BspDI ATCGAT 1 cut(s) 138
BsrDI GCAATG 1 cut(s) 157
BsrI ACTGG 1 cut(s) 96
BssMI GATC 1 cut(s) 139
Bst6I CTCTTC 1 cut(s) 199
BstC8I GCNNGC 1 cut(s) 76
BstDEI CTNAG 1 cut(s) 117
BstF5I GGATG 2 cut(s) 35, 175
BstKTI GATC 1 cut(s) 142
BstMBI GATC 1 cut(s) 139
BstMWI GCNNNNNNNGC 1 cut(s) 84
BstV1I GCAGC 1 cut(s) 159
Bsu15I ATCGAT 1 cut(s) 138
BsuRI GGCC 1 cut(s) 57
BsuTUI ATCGAT 1 cut(s) 138
BtsCI GGATG 2 cut(s) 35, 175
BtsIMutI CAGTG 2 cut(s) 149, 195
Cac8I GCNNGC 1 cut(s) 76
Cfr13I GGNCC 3 cut(s) 33, 47, 56
ClaI ATCGAT 1 cut(s) 138
CviAII CATG 1 cut(s) 103
CviJI RGCY 3 cut(s) 57, 116, 210
CviKI_1 RGCY 3 cut(s) 57, 116, 210
DdeI CTNAG 1 cut(s) 117
DpnI GATC 1 cut(s) 141
DpnII GATC 1 cut(s) 139
DrdI GACNNNNNNGTC 1 cut(s) 230
DseDI GACNNNNNNGTC 1 cut(s) 230
Eam1104I CTCTTC 1 cut(s) 199
EarI CTCTTC 1 cut(s) 199
Ecl136II GAGCTC 1 cut(s) 116
Eco24I GRGCYC 1 cut(s) 118
Eco47I GGWCC 2 cut(s) 33, 47
Eco53kI GAGCTC 1 cut(s) 116
Eco57I CTGAAG 1 cut(s) 72
EcoICRI GAGCTC 1 cut(s) 116
EcoO109I RGGNCCY 1 cut(s) 56
EcoT38I GRGCYC 1 cut(s) 118
FaeI CATG 1 cut(s) 106
FaiI YATR 3 cut(s) 27, 104, 213
FalI AAGNNNNNCTT 2 cut(s) 210, 242
FaqI GGGAC 1 cut(s) 121
FatI CATG 1 cut(s) 102
Fnu4HI GCNGC 2 cut(s) 148, 256
FokI GGATG 2 cut(s) 42, 182
FriOI GRGCYC 1 cut(s) 118
Fsp4HI GCNGC 2 cut(s) 148, 256
FspBI CTAG 1 cut(s) 60
GluI GCNGC 2 cut(s) 148, 256
HaeIII GGCC 1 cut(s) 57
Hin1II CATG 1 cut(s) 106
HincII GTYRAC 1 cut(s) 235
HindII GTYRAC 1 cut(s) 235
HphI GGTGA 1 cut(s) 106
Hpy166II GTNNAC 2 cut(s) 235, 250
Hpy188III TCNNGA 1 cut(s) 119
Hpy8I GTNNAC 2 cut(s) 235, 250
HpyAV CCTTC 2 cut(s) 47, 49
HpyCH4V TGCA 2 cut(s) 147, 215
HpyF10VI GCNNNNNNNGC 1 cut(s) 84
HpyF3I CTNAG 1 cut(s) 117
Hsp92II CATG 1 cut(s) 106
Kzo9I GATC 1 cut(s) 139
LmnI GCTCC 2 cut(s) 65, 113
LpnPI CCDG 7 cut(s) 7, 63, 77, 88, 96, 104, 200
Lsp1109I GCAGC 1 cut(s) 159
LweI GCATC 1 cut(s) 61
MaeI CTAG 1 cut(s) 60
MaeIII GTNAC 1 cut(s) 94
MalI GATC 1 cut(s) 141
MboI GATC 1 cut(s) 139
MboII GAAGA 1 cut(s) 216
MhlI GDGCHC 1 cut(s) 118
MluCI AATT 1 cut(s) 132
MnlI CCTC 2 cut(s) 149, 200
MwoI GCNNNNNNNGC 1 cut(s) 84
NdeII GATC 1 cut(s) 139
NlaIII CATG 1 cut(s) 106
NmuCI GTSAC 1 cut(s) 94
PkrI GCNGC 2 cut(s) 149, 257
Psp124BI GAGCTC 1 cut(s) 118
PspPI GGNCC 3 cut(s) 33, 47, 56
SacI GAGCTC 1 cut(s) 118
SatI GCNGC 2 cut(s) 148, 256
Sau3AI GATC 1 cut(s) 139
Sau96I GGNCC 3 cut(s) 33, 47, 56
SduI GDGCHC 1 cut(s) 118
SetI ASST 5 cut(s) 26, 52, 118, 160, 228
SfaNI GCATC 1 cut(s) 61
SinI GGWCC 2 cut(s) 33, 47
Sse9I AATT 1 cut(s) 132
SsiI CCGC 5 cut(s) 36, 45, 63, 78, 255
SspMI CTAG 1 cut(s) 60
SstI GAGCTC 1 cut(s) 118
TaqI TCGA 1 cut(s) 138
TasI AATT 1 cut(s) 132
TauI GCSGC 1 cut(s) 258
TscAI CASTG 2 cut(s) 149, 202
TseFI GTSAC 1 cut(s) 94
TseI GCWGC 1 cut(s) 147
Tsp45I GTSAC 1 cut(s) 94
TspRI CASTG 2 cut(s) 149, 202
VpaK11BI GGWCC 2 cut(s) 33, 47
XspI CTAG 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.