Rmu_sc0000078.1_g000014

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000078.1
N/A
Physical Location & Seq
Reverse (-)
77355 .. 77829
475 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 414 bp
atgtcgaatgaacctagactcgactttcccatgcttaactcaacatgctcggattaccacagttgggtaaccgatgttgagaaccatctcacttccaagggaatattacacataatccaggcacctaaaccggatattgagttcaaccgaacatctacaaagcatgctcaagcagttatcttgatgcgacgccatatggacaaggcactcagattggagtatatgtcgatcaaggatgcaagagagctatgggtagcgctagaagagcgctttggcaatgtccaagattccctcctccctgacttgaaggttcaatggaacaatctgcgctttgctgacttcaagtctgttgctgaatataattcagaagctcttcgcatacaccattgtggtatcaaagcaataccgtactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

137

Amino Acids

15.98

Weight (kDa)

6.65

Isoelectric Point (pI)

41.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 121
AcyI GRCGYC 1 cut(s) 190
AfaI GTAC 1 cut(s) 410
AfeI AGCGCT 2 cut(s) 258, 269
AfiI CCNNNNNNNGG 1 cut(s) 64
AgsI TTSAA 4 cut(s) 145, 307, 314, 343
AhdI GACNNNNNGTC 1 cut(s) 343
AjnI CCWGG 1 cut(s) 117
AjuI GAANNNNNNNTTGG 2 cut(s) 255, 287
AleI CACNNNNGTG 1 cut(s) 387
AloI GAACNNNNNNTCC 2 cut(s) 125, 157
AluBI AGCT 2 cut(s) 247, 371
AluI AGCT 2 cut(s) 247, 371
Aor51HI AGCGCT 2 cut(s) 258, 269
Asp700I GAANNNNTTC 1 cut(s) 372
AspLEI GCGC 3 cut(s) 259, 270, 330
BanI GGYRCC 1 cut(s) 121
BccI CCATC 1 cut(s) 93
BciT130I CCWGG 1 cut(s) 119
BfaI CTAG 2 cut(s) 15, 260
BfoI RGCGCY 2 cut(s) 260, 271
Bme1390I CCNGG 1 cut(s) 119
BmeRI GACNNNNNGTC 1 cut(s) 343
BmiI GGNNCC 1 cut(s) 123
BmrFI CCNGG 1 cut(s) 119
BmsI GCATC 2 cut(s) 174, 226
BpuEI CTTGAG 1 cut(s) 153
BsaHI GRCGYC 1 cut(s) 190
BsaJI CCNNGG 1 cut(s) 96
BsaWI WCCGGW 1 cut(s) 130
BsaXI ACNNNNNCTCC 2 cut(s) 209, 239
Bsc4I CCNNNNNNNGG 1 cut(s) 64
Bse3DI GCAATG 1 cut(s) 283
BseBI CCWGG 1 cut(s) 119
BseDI CCNNGG 1 cut(s) 96
BseGI GGATG 1 cut(s) 241
BseLI CCNNNNNNNGG 1 cut(s) 64
BseMI GCAATG 1 cut(s) 283
BseMII CTCAG 1 cut(s) 223
BseRI GAGGAG 1 cut(s) 284
BshNI GGYRCC 1 cut(s) 121
BsiSI CCGG 1 cut(s) 131
BslI CCNNNNNNNGG 1 cut(s) 64
Bsp143I GATC 1 cut(s) 228
BspCNI CTCAG 1 cut(s) 222
BspLI GGNNCC 1 cut(s) 123
BspQI GCTCTTC 2 cut(s) 258, 378
BspT107I GGYRCC 1 cut(s) 121
BsrDI GCAATG 1 cut(s) 283
BssECI CCNNGG 1 cut(s) 96
BssMI GATC 1 cut(s) 228
BssNI GRCGYC 1 cut(s) 190
BssT1I CCWWGG 1 cut(s) 96
Bst2UI CCWGG 1 cut(s) 119
Bst4CI ACNGT 2 cut(s) 62, 408
Bst6I CTCTTC 2 cut(s) 258, 378
BstACI GRCGYC 1 cut(s) 190
BstC8I GCNNGC 1 cut(s) 165
BstDEI CTNAG 1 cut(s) 209
BstEII GGTNACC 1 cut(s) 67
BstF5I GGATG 1 cut(s) 241
BstH2I RGCGCY 2 cut(s) 260, 271
BstHHI GCGC 3 cut(s) 259, 270, 330
BstKTI GATC 1 cut(s) 231
BstMBI GATC 1 cut(s) 228
BstMWI GCNNNNNNNGC 1 cut(s) 265
BstNI CCWGG 1 cut(s) 119
BstNSI RCATGY 2 cut(s) 48, 167
BstPI GGTNACC 1 cut(s) 67
BstSCI CCNGG 1 cut(s) 117
BtsCI GGATG 1 cut(s) 241
Cac8I GCNNGC 1 cut(s) 165
CfoI GCGC 3 cut(s) 259, 270, 330
CseI GACGC 1 cut(s) 198
Csp6I GTAC 1 cut(s) 409
CviAII CATG 3 cut(s) 31, 45, 164
CviJI RGCY 2 cut(s) 247, 371
CviKI_1 RGCY 2 cut(s) 247, 371
CviQI GTAC 1 cut(s) 409
DdeI CTNAG 1 cut(s) 209
DpnI GATC 1 cut(s) 230
DpnII GATC 1 cut(s) 228
DriI GACNNNNNGTC 1 cut(s) 343
Eam1104I CTCTTC 2 cut(s) 258, 378
Eam1105I GACNNNNNGTC 1 cut(s) 343
EarI CTCTTC 2 cut(s) 258, 378
Eco130I CCWWGG 1 cut(s) 96
Eco47III AGCGCT 2 cut(s) 258, 269
Eco91I GGTNACC 1 cut(s) 67
EcoO65I GGTNACC 1 cut(s) 67
EcoRII CCWGG 1 cut(s) 117
EcoT14I CCWWGG 1 cut(s) 96
ErhI CCWWGG 1 cut(s) 96
FaeI CATG 3 cut(s) 34, 48, 167
FatI CATG 3 cut(s) 30, 44, 163
FauNDI CATATG 1 cut(s) 195
FokI GGATG 1 cut(s) 248
FspBI CTAG 2 cut(s) 15, 260
GlaI GCGC 3 cut(s) 258, 269, 329
HaeII RGCGCY 2 cut(s) 260, 271
HapII CCGG 1 cut(s) 131
HgaI GACGC 1 cut(s) 198
HhaI GCGC 3 cut(s) 259, 270, 330
Hin1I GRCGYC 1 cut(s) 190
Hin1II CATG 3 cut(s) 34, 48, 167
Hin6I GCGC 3 cut(s) 257, 268, 328
HinP1I GCGC 3 cut(s) 257, 268, 328
HinfI GANTC 2 cut(s) 18, 287
HpaII CCGG 1 cut(s) 131
Hpy188I TCNGA 3 cut(s) 52, 212, 367
Hpy188III TCNNGA 1 cut(s) 181
Hpy99I CGWCG 1 cut(s) 192
HpyAV CCTTC 1 cut(s) 301
HpyCH4III ACNGT 2 cut(s) 62, 408
HpyCH4V TGCA 1 cut(s) 239
HpyF10VI GCNNNNNNNGC 1 cut(s) 265
HpyF3I CTNAG 1 cut(s) 209
Hsp92I GRCGYC 1 cut(s) 190
Hsp92II CATG 3 cut(s) 34, 48, 167
HspAI GCGC 3 cut(s) 257, 268, 328
Kzo9I GATC 1 cut(s) 228
LguI GCTCTTC 2 cut(s) 258, 378
LpnPI CCDG 4 cut(s) 104, 131, 144, 312
LweI GCATC 2 cut(s) 174, 226
MaeI CTAG 2 cut(s) 15, 260
MaeIII GTNAC 1 cut(s) 67
MalI GATC 1 cut(s) 230
MboI GATC 1 cut(s) 228
MboII GAAGA 2 cut(s) 275, 365
MluCI AATT 1 cut(s) 361
MlyI GAGTC 1 cut(s) 12
MnlI CCTC 2 cut(s) 302, 305
MroXI GAANNNNTTC 1 cut(s) 372
MseI TTAA 1 cut(s) 36
MslI CAYNNNNRTG 1 cut(s) 387
MspI CCGG 1 cut(s) 131
MspR9I CCNGG 1 cut(s) 119
MvaI CCWGG 1 cut(s) 119
MwoI GCNNNNNNNGC 1 cut(s) 265
NdeI CATATG 1 cut(s) 195
NdeII GATC 1 cut(s) 228
NlaIII CATG 3 cut(s) 34, 48, 167
NlaIV GGNNCC 1 cut(s) 123
NspI RCATGY 2 cut(s) 48, 167
OliI CACNNNNGTG 1 cut(s) 387
PaeI GCATGC 1 cut(s) 167
PciSI GCTCTTC 2 cut(s) 258, 378
PdmI GAANNNNTTC 1 cut(s) 372
PfeI GAWTC 1 cut(s) 287
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
Psp6I CCWGG 1 cut(s) 117
PspEI GGTNACC 1 cut(s) 67
PspGI CCWGG 1 cut(s) 117
PspN4I GGNNCC 1 cut(s) 123
RsaI GTAC 1 cut(s) 410
RsaNI GTAC 1 cut(s) 409
RseI CAYNNNNRTG 1 cut(s) 387
SapI GCTCTTC 2 cut(s) 258, 378
SaqAI TTAA 1 cut(s) 36
Sau3AI GATC 1 cut(s) 228
SchI GAGTC 1 cut(s) 12
ScrFI CCNGG 1 cut(s) 119
SetI ASST 5 cut(s) 16, 127, 249, 312, 373
SfaNI GCATC 2 cut(s) 174, 226
SmiMI CAYNNNNRTG 1 cut(s) 387
SmlI CTYRAG 1 cut(s) 168
SmoI CTYRAG 1 cut(s) 168
SphI GCATGC 1 cut(s) 167
Sse9I AATT 1 cut(s) 361
SspI AATATT 1 cut(s) 105
SspMI CTAG 2 cut(s) 15, 260
StyD4I CCNGG 1 cut(s) 117
StyI CCWWGG 1 cut(s) 96
TaaI ACNGT 2 cut(s) 62, 408
TaqI TCGA 3 cut(s) 5, 21, 227
TasI AATT 1 cut(s) 361
TfiI GAWTC 1 cut(s) 287
Tru1I TTAA 1 cut(s) 36
Tru9I TTAA 1 cut(s) 36
TspDTI ATGAA 1 cut(s) 24
XceI RCATGY 2 cut(s) 48, 167
XmnI GAANNNNTTC 1 cut(s) 372
XspI CTAG 2 cut(s) 15, 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.