Rmu_sc0000078.1_g000054

At2g34160-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000078.1
N/A
Physical Location & Seq
Forward (+)
247087 .. 247317
231 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 231 bp
atggcgtcggtgcaggtagcgagggttgcagccgtaccaccaccgcaggcccaggctcaggctcagccccaggcccaggtccagacccagactcagagccagacccaggccataggagagcagcagaagaagaacagaattcaagtttccaataccaagaagccgctcttcttctacgtcaatcttgctaaggtatgtggtgaatcaatgtttcatcttttgtgtaaataa
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

76

Amino Acids

8.37

Weight (kDa)

9.92

Isoelectric Point (pI)

35.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 4
AccBSI CCGCTC 1 cut(s) 166
AciI CCGC 2 cut(s) 44, 164
AcsI RAATTY 1 cut(s) 138
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 36
AfiI CCNNNNNNNGG 3 cut(s) 58, 76, 106
AgsI TTSAA 1 cut(s) 143
AjnI CCWGG 4 cut(s) 51, 69, 75, 105
AoxI GGCC 3 cut(s) 48, 72, 108
ApeKI GCWGC 2 cut(s) 29, 121
ApoI RAATTY 1 cut(s) 138
AspS9I GGNCC 3 cut(s) 49, 73, 79
AsuHPI GGTGA 1 cut(s) 212
AvaII GGWCC 1 cut(s) 79
BbvI GCAGC 2 cut(s) 41, 133
BceAI ACGGC 1 cut(s) 17
BciT130I CCWGG 4 cut(s) 53, 71, 77, 107
BfuAI ACCTGC 1 cut(s) 4
BisI GCNGC 3 cut(s) 30, 122, 164
BlpI GCTNAGC 1 cut(s) 63
BlsI GCNGC 3 cut(s) 31, 123, 165
Bme1390I CCNGG 4 cut(s) 53, 71, 77, 107
Bme18I GGWCC 1 cut(s) 79
BmgT120I GGNCC 3 cut(s) 49, 73, 79
BmrFI CCNGG 4 cut(s) 53, 71, 77, 107
Bpu10I CCTNAGC 2 cut(s) 57, 189
Bpu1102I GCTNAGC 1 cut(s) 63
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 4 cut(s) 51, 69, 75, 105
Bsc4I CCNNNNNNNGG 3 cut(s) 58, 76, 106
BseBI CCWGG 4 cut(s) 53, 71, 77, 107
BseDI CCNNGG 4 cut(s) 51, 69, 75, 105
BseLI CCNNNNNNNGG 3 cut(s) 58, 76, 106
BseMII CTCAG 3 cut(s) 71, 77, 107
BseXI GCAGC 2 cut(s) 41, 133
BsgI GTGCAG 1 cut(s) 32
BshFI GGCC 3 cut(s) 50, 74, 110
BslI CCNNNNNNNGG 3 cut(s) 58, 76, 106
BsnI GGCC 3 cut(s) 50, 74, 110
Bsp1720I GCTNAGC 1 cut(s) 63
BspACI CCGC 2 cut(s) 44, 164
BspANI GGCC 3 cut(s) 50, 74, 110
BspCNI CTCAG 3 cut(s) 70, 76, 106
BspMI ACCTGC 1 cut(s) 4
BspQI GCTCTTC 1 cut(s) 173
BsrBI CCGCTC 1 cut(s) 166
BssECI CCNNGG 4 cut(s) 51, 69, 75, 105
BssNI GRCGYC 1 cut(s) 5
Bst2UI CCWGG 4 cut(s) 53, 71, 77, 107
Bst6I CTCTTC 1 cut(s) 173
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 1 cut(s) 48
BstDEI CTNAG 4 cut(s) 57, 63, 93, 189
BstMWI GCNNNNNNNGC 1 cut(s) 26
BstNI CCWGG 4 cut(s) 53, 71, 77, 107
BstSCI CCNGG 4 cut(s) 51, 69, 75, 105
BstV1I GCAGC 2 cut(s) 41, 133
BsuRI GGCC 3 cut(s) 50, 74, 110
BveI ACCTGC 1 cut(s) 4
Cac8I GCNNGC 1 cut(s) 48
Cfr13I GGNCC 3 cut(s) 49, 73, 79
Csp6I GTAC 1 cut(s) 35
CviJI RGCY 9 cut(s) 32, 50, 56, 62, 67, 74, 99, 110, 163
CviKI_1 RGCY 9 cut(s) 32, 50, 56, 62, 67, 74, 99, 110, 163
CviQI GTAC 1 cut(s) 35
DdeI CTNAG 4 cut(s) 57, 63, 93, 189
Eam1104I CTCTTC 1 cut(s) 173
EarI CTCTTC 1 cut(s) 173
Eco47I GGWCC 1 cut(s) 79
EcoRI GAATTC 1 cut(s) 138
EcoRII CCWGG 4 cut(s) 51, 69, 75, 105
FaiI YATR 2 cut(s) 113, 196
FalI AAGNNNNNCTT 2 cut(s) 152, 184
Fnu4HI GCNGC 3 cut(s) 30, 122, 164
Fsp4HI GCNGC 3 cut(s) 30, 122, 164
GluI GCNGC 3 cut(s) 30, 122, 164
HaeIII GGCC 3 cut(s) 50, 74, 110
Hin1I GRCGYC 1 cut(s) 5
HinfI GANTC 2 cut(s) 91, 203
HphI GGTGA 1 cut(s) 212
Hpy188I TCNGA 1 cut(s) 96
Hpy188III TCNNGA 1 cut(s) 82
Hpy99I CGWCG 1 cut(s) 10
HpyCH4IV ACGT 1 cut(s) 177
HpyCH4V TGCA 2 cut(s) 13, 29
HpyF10VI GCNNNNNNNGC 1 cut(s) 26
HpyF3I CTNAG 4 cut(s) 57, 63, 93, 189
HpySE526I ACGT 1 cut(s) 177
Hsp92I GRCGYC 1 cut(s) 5
LguI GCTCTTC 1 cut(s) 173
Lsp1109I GCAGC 2 cut(s) 41, 133
MaeII ACGT 1 cut(s) 177
MbiI CCGCTC 1 cut(s) 166
MboII GAAGA 4 cut(s) 139, 142, 160, 163
MluCI AATT 1 cut(s) 138
MlyI GAGTC 1 cut(s) 85
MnlI CCTC 1 cut(s) 15
MspR9I CCNGG 4 cut(s) 53, 71, 77, 107
MvaI CCWGG 4 cut(s) 53, 71, 77, 107
MwoI GCNNNNNNNGC 1 cut(s) 26
PciSI GCTCTTC 1 cut(s) 173
PfeI GAWTC 1 cut(s) 203
PkrI GCNGC 3 cut(s) 31, 123, 165
PleI GAGTC 1 cut(s) 85
PpsI GAGTC 1 cut(s) 85
Psp6I CCWGG 4 cut(s) 51, 69, 75, 105
PspGI CCWGG 4 cut(s) 51, 69, 75, 105
PspPI GGNCC 3 cut(s) 49, 73, 79
RsaI GTAC 1 cut(s) 36
RsaNI GTAC 1 cut(s) 35
SapI GCTCTTC 1 cut(s) 173
SatI GCNGC 3 cut(s) 30, 122, 164
Sau96I GGNCC 3 cut(s) 49, 73, 79
SchI GAGTC 1 cut(s) 85
ScrFI CCNGG 4 cut(s) 53, 71, 77, 107
SetI ASST 4 cut(s) 18, 81, 180, 195
SinI GGWCC 1 cut(s) 79
Sse9I AATT 1 cut(s) 138
SsiI CCGC 2 cut(s) 44, 164
StyD4I CCNGG 4 cut(s) 51, 69, 75, 105
TaiI ACGT 1 cut(s) 180
TasI AATT 1 cut(s) 138
TauI GCSGC 1 cut(s) 166
TfiI GAWTC 1 cut(s) 203
TseI GCWGC 2 cut(s) 29, 121
TspDTI ATGAA 1 cut(s) 203
VpaK11BI GGWCC 1 cut(s) 79
XapI RAATTY 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.