Rmu_sc0000079.1_g000008

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000079.1
N/A
Physical Location & Seq
Forward (+)
33523 .. 33879
357 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 357 bp
atgtcgaatgaacctagactcgactttcccatgcttgactcaacaggctcggattaccacatttgggtaaccgatcttgagaaccatctcacttcaaaaggagtattacccataatccaagcacttaacccggatcttgtgttcgtgcaaacacctacaaagcatgctcaagcagttatcttgatgcgacgccatatggacaaggcactcagattggagtatatgtcgatcaagaatgcaagagatctatgggtagcgctagaagagcgctttggaaatgtccaagattccctcctccttgacttgaaggttcaatggaacattctgcgctttgctgatttcaagtatgttgcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

118

Amino Acids

13.74

Weight (kDa)

6.04

Isoelectric Point (pI)

44.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 141
AcyI GRCGYC 1 cut(s) 190
AfeI AGCGCT 2 cut(s) 258, 269
AfiI CCNNNNNNNGG 1 cut(s) 64
AgsI TTSAA 4 cut(s) 96, 307, 314, 343
AjuI GAANNNNNNNTTGG 2 cut(s) 255, 287
AloI GAACNNNNNNTCC 2 cut(s) 125, 157
AlwI GGATC 1 cut(s) 141
Aor51HI AGCGCT 2 cut(s) 258, 269
AspLEI GCGC 3 cut(s) 259, 270, 330
AsuC2I CCSGG 1 cut(s) 131
BccI CCATC 1 cut(s) 93
BcnI CCSGG 1 cut(s) 131
BfaI CTAG 2 cut(s) 15, 260
BfoI RGCGCY 2 cut(s) 260, 271
BglII AGATCT 1 cut(s) 244
Bme1390I CCNGG 1 cut(s) 131
BmrFI CCNGG 1 cut(s) 131
BmsI GCATC 1 cut(s) 174
BpuEI CTTGAG 2 cut(s) 98, 153
BpuMI CCSGG 1 cut(s) 131
BsaHI GRCGYC 1 cut(s) 190
BsaXI ACNNNNNCTCC 2 cut(s) 209, 239
Bsc4I CCNNNNNNNGG 1 cut(s) 64
BseLI CCNNNNNNNGG 1 cut(s) 64
BseMII CTCAG 1 cut(s) 223
BseRI GAGGAG 1 cut(s) 284
BsiSI CCGG 1 cut(s) 131
BslI CCNNNNNNNGG 1 cut(s) 64
BsmI GAATGC 1 cut(s) 241
Bsp143I GATC 4 cut(s) 73, 133, 228, 244
BspCNI CTCAG 1 cut(s) 222
BspPI GGATC 1 cut(s) 141
BspQI GCTCTTC 1 cut(s) 258
BssMI GATC 4 cut(s) 73, 133, 228, 244
BssNI GRCGYC 1 cut(s) 190
Bst6I CTCTTC 1 cut(s) 258
BstACI GRCGYC 1 cut(s) 190
BstC8I GCNNGC 1 cut(s) 165
BstDEI CTNAG 1 cut(s) 209
BstEII GGTNACC 1 cut(s) 67
BstH2I RGCGCY 2 cut(s) 260, 271
BstHHI GCGC 3 cut(s) 259, 270, 330
BstKTI GATC 4 cut(s) 76, 136, 231, 247
BstMBI GATC 4 cut(s) 73, 133, 228, 244
BstMWI GCNNNNNNNGC 1 cut(s) 265
BstNSI RCATGY 1 cut(s) 167
BstPI GGTNACC 1 cut(s) 67
BstSCI CCNGG 1 cut(s) 129
BstX2I RGATCY 2 cut(s) 133, 244
BstYI RGATCY 2 cut(s) 133, 244
Cac8I GCNNGC 1 cut(s) 165
CfoI GCGC 3 cut(s) 259, 270, 330
CseI GACGC 1 cut(s) 198
CviAII CATG 2 cut(s) 31, 164
CviJI RGCY 1 cut(s) 48
CviKI_1 RGCY 1 cut(s) 48
DdeI CTNAG 1 cut(s) 209
DpnI GATC 4 cut(s) 75, 135, 230, 246
DpnII GATC 4 cut(s) 73, 133, 228, 244
Eam1104I CTCTTC 1 cut(s) 258
EarI CTCTTC 1 cut(s) 258
Eco47III AGCGCT 2 cut(s) 258, 269
Eco91I GGTNACC 1 cut(s) 67
EcoO65I GGTNACC 1 cut(s) 67
FaeI CATG 2 cut(s) 34, 167
FaiI YATR 9 cut(s) 32, 113, 165, 195, 197, 222, 224, 250, 348
FatI CATG 2 cut(s) 30, 163
FauNDI CATATG 1 cut(s) 195
FspBI CTAG 2 cut(s) 15, 260
GlaI GCGC 3 cut(s) 258, 269, 329
HaeII RGCGCY 2 cut(s) 260, 271
HapII CCGG 1 cut(s) 131
HgaI GACGC 1 cut(s) 198
HhaI GCGC 3 cut(s) 259, 270, 330
Hin1I GRCGYC 1 cut(s) 190
Hin1II CATG 2 cut(s) 34, 167
Hin6I GCGC 3 cut(s) 257, 268, 328
HinP1I GCGC 3 cut(s) 257, 268, 328
HinfI GANTC 3 cut(s) 18, 38, 287
HpaII CCGG 1 cut(s) 131
Hpy188I TCNGA 2 cut(s) 52, 212
Hpy188III TCNNGA 3 cut(s) 77, 181, 232
Hpy99I CGWCG 1 cut(s) 192
HpyAV CCTTC 1 cut(s) 301
HpyCH4V TGCA 2 cut(s) 148, 239
HpyF10VI GCNNNNNNNGC 1 cut(s) 265
HpyF3I CTNAG 1 cut(s) 209
Hsp92I GRCGYC 1 cut(s) 190
Hsp92II CATG 2 cut(s) 34, 167
HspAI GCGC 3 cut(s) 257, 268, 328
Kzo9I GATC 4 cut(s) 73, 133, 228, 244
LguI GCTCTTC 1 cut(s) 258
LpnPI CCDG 2 cut(s) 30, 144
LweI GCATC 1 cut(s) 174
MaeI CTAG 2 cut(s) 15, 260
MaeIII GTNAC 1 cut(s) 67
MalI GATC 4 cut(s) 75, 135, 230, 246
MboI GATC 4 cut(s) 73, 133, 228, 244
MboII GAAGA 1 cut(s) 275
MflI RGATCY 2 cut(s) 133, 244
MlyI GAGTC 2 cut(s) 12, 32
MnlI CCTC 2 cut(s) 302, 305
MseI TTAA 2 cut(s) 126, 355
MspI CCGG 1 cut(s) 131
MspR9I CCNGG 1 cut(s) 131
Mva1269I GAATGC 1 cut(s) 241
MwoI GCNNNNNNNGC 1 cut(s) 265
NciI CCSGG 1 cut(s) 131
NdeI CATATG 1 cut(s) 195
NdeII GATC 4 cut(s) 73, 133, 228, 244
NlaIII CATG 2 cut(s) 34, 167
NspI RCATGY 1 cut(s) 167
PaeI GCATGC 1 cut(s) 167
PciSI GCTCTTC 1 cut(s) 258
PctI GAATGC 1 cut(s) 241
PfeI GAWTC 1 cut(s) 287
PleI GAGTC 2 cut(s) 12, 32
PpsI GAGTC 2 cut(s) 12, 32
PspEI GGTNACC 1 cut(s) 67
PsuI RGATCY 2 cut(s) 133, 244
SapI GCTCTTC 1 cut(s) 258
SaqAI TTAA 2 cut(s) 126, 355
Sau3AI GATC 4 cut(s) 73, 133, 228, 244
SchI GAGTC 2 cut(s) 12, 32
ScrFI CCNGG 1 cut(s) 131
SetI ASST 3 cut(s) 16, 157, 312
SfaNI GCATC 1 cut(s) 174
SmlI CTYRAG 2 cut(s) 77, 168
SmoI CTYRAG 2 cut(s) 77, 168
SphI GCATGC 1 cut(s) 167
SspMI CTAG 2 cut(s) 15, 260
StyD4I CCNGG 1 cut(s) 129
TaqI TCGA 3 cut(s) 5, 21, 227
TfiI GAWTC 1 cut(s) 287
Tru1I TTAA 2 cut(s) 126, 355
Tru9I TTAA 2 cut(s) 126, 355
TspDTI ATGAA 1 cut(s) 24
XceI RCATGY 1 cut(s) 167
XspI CTAG 2 cut(s) 15, 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.