Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000079.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

283962 .. 285399

Gene Structure 1438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

atggcctacaccaccaccacagccctactacaatacacgaatcggagttacaccccttcttcaacccctttgtttcctaatcttcctgctcacaatgacactagtgcatcagttcattttagtcgtagtctcaggagcttggctgacaaaaaccaccccattgacgttccactaaaaattacaactcccttgttttatactgtctccgtcaacacgttccagtgccccaataattcatgcgccgggcctaatgggacgcttcattttagtcgtagtctcaggagcttggctgataaaaaccaccccattgacgttccactaaaaattacaactcccttgttttataccgtctccgtcaacacgttccagtgccccaataattcatgcgccgggcctaatgggacgcgtctggctgctagtataaacaacattagcttcgagagccctagcattgacatactacaagcttactattaccatgttaacggggtatttggaactcggtttccaagttccccgcctttgctgtttaactttacagcgcagtacttgccgcagtaccttcagaccccgaaacaaaagacagaggtgaaggtactggagtacaacgcgacagtggagcttgtgttgcaggggactaatttggtggcaggggatgaccatccaatgcatcttcatggttacagtttctatgtggttggattggggcttgggaactttgacaaggataaggaccctttgaaatataatcttgttgatcctcctcttcaaaacaccattgctgtccctgtaaatgggtgggctaccatcagattcaaggctgataatcctggagtttggtttatgcattgccatctggataggcatatgtcatgggggatggatacgacattcatagtgaaaaatggaaagggacctgaagctcaaatcttacctccaccaccagatatgccaccttgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005507 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0010023 GO:0010035 GO:0010038 GO:0016491 GO:0016722 GO:0017144 GO:0018130 GO:0018958 GO:0019438 GO:0019748 GO:0042221 GO:0043167 GO:0043169 GO:0044237 GO:0044249 GO:0044550 GO:0046189 GO:0046483 GO:0046688 GO:0046872 GO:0046914 GO:0050896 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

320

Amino Acids

35.47

Weight (kDa)

7.69

Isoelectric Point (pI)

44.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu-oxidase_2	PF07731	169 - 303	3.6e-42	Multicopper oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	406, 611
AciI	CCGC	2 cut(s)	518, 554
AclWI	GGATC	1 cut(s)	752
AcuI	CTGAAG	2 cut(s)	548, 939
AfaI	GTAC	4 cut(s)	548, 560, 597, 605
AfiI	CCNNNNNNNGG	1 cut(s)	794
AflIII	ACRYGT	3 cut(s)	213, 360, 404
AgsI	TTSAA	4 cut(s)	63, 742, 770, 817
AhlI	ACTAGT	1 cut(s)	101
AjnI	CCWGG	1 cut(s)	829
AloI	GAACNNNNNNTCC	2 cut(s)	490, 522
AluBI	AGCT	6 cut(s)	138, 285, 435, 467, 622, 923
AluI	AGCT	6 cut(s)	138, 285, 435, 467, 622, 923
Alw26I	GTCTC	4 cut(s)	134, 208, 281, 355
AlwI	GGATC	1 cut(s)	752
AoxI	GGCC	3 cut(s)	3, 245, 392
ApeKI	GCWGC	1 cut(s)	413
AspLEI	GCGC	3 cut(s)	242, 389, 544
AspS9I	GGNCC	4 cut(s)	245, 392, 733, 914
AsuC2I	CCSGG	2 cut(s)	244, 391
AsuHPI	GGTGA	1 cut(s)	601
AvaII	GGWCC	2 cut(s)	733, 914
BaeGI	GKGCMC	2 cut(s)	227, 374
BaeI	ACNNNNGTAYC	2 cut(s)	587, 620
BanII	GRGCYC	1 cut(s)	446
BbvI	GCAGC	1 cut(s)	400
BccI	CCATC	4 cut(s)	669, 815, 861, 874
BciT130I	CCWGG	1 cut(s)	831
BciVI	GTATCC	1 cut(s)	877
BcnI	CCSGG	2 cut(s)	244, 391
BcoDI	GTCTC	4 cut(s)	134, 208, 281, 355
BcuI	ACTAGT	1 cut(s)	101
BfaI	CTAG	3 cut(s)	102, 417, 447
BfuI	GTATCC	1 cut(s)	877
BisI	GCNGC	2 cut(s)	414, 554
BlsI	GCNGC	2 cut(s)	415, 555
BmcAI	AGTACT	1 cut(s)	548
Bme1390I	CCNGG	3 cut(s)	244, 391, 831
Bme18I	GGWCC	2 cut(s)	733, 914
BmgT120I	GGNCC	4 cut(s)	245, 392, 733, 914
BmiI	GGNNCC	2 cut(s)	735, 915
BmrFI	CCNGG	3 cut(s)	244, 391, 831
BmsI	GCATC	2 cut(s)	116, 679
BpmI	CTGGAG	2 cut(s)	620, 852
BpuMI	CCSGG	2 cut(s)	244, 391
BsaBI	GATNNNNATC	1 cut(s)	660
BsaXI	ACNNNNNCTCC	2 cut(s)	611, 641
Bsc4I	CCNNNNNNNGG	1 cut(s)	794
Bse1I	ACTGG	3 cut(s)	220, 367, 603
Bse3DI	GCAATG	2 cut(s)	777, 847
Bse8I	GATNNNNATC	1 cut(s)	660
BseBI	CCWGG	1 cut(s)	831
BseGI	GGATG	3 cut(s)	661, 661, 885
BseJI	GATNNNNATC	1 cut(s)	660
BseLI	CCNNNNNNNGG	1 cut(s)	794
BseMI	GCAATG	2 cut(s)	777, 847
BseMII	CTCAG	2 cut(s)	145, 292
BseNI	ACTGG	3 cut(s)	220, 367, 603
BseRI	GAGGAG	1 cut(s)	753
BseSI	GKGCMC	2 cut(s)	227, 374
BseXI	GCAGC	1 cut(s)	400
Bsh1236I	CGCG	2 cut(s)	406, 611
BshFI	GGCC	3 cut(s)	5, 247, 394
BsiSI	CCGG	2 cut(s)	243, 390
BslFI	GGGAC	5 cut(s)	268, 415, 649, 770, 927
BslI	CCNNNNNNNGG	1 cut(s)	794
BsmAI	GTCTC	4 cut(s)	134, 208, 281, 355
BsmBI	CGTCTC	1 cut(s)	355
BsmFI	GGGAC	5 cut(s)	268, 415, 649, 770, 927
BsnI	GGCC	3 cut(s)	5, 247, 394
Bsp1286I	GDGCHC	3 cut(s)	227, 374, 446
Bsp143I	GATC	1 cut(s)	757
BspACI	CCGC	2 cut(s)	518, 554
BspANI	GGCC	3 cut(s)	5, 247, 394
BspCNI	CTCAG	2 cut(s)	144, 291
BspFNI	CGCG	2 cut(s)	406, 611
BspLI	GGNNCC	2 cut(s)	735, 915
BspPI	GGATC	1 cut(s)	752
BsrDI	GCAATG	2 cut(s)	777, 847
BsrI	ACTGG	3 cut(s)	220, 367, 603
BssMI	GATC	1 cut(s)	757
Bst2UI	CCWGG	1 cut(s)	831
Bst4CI	ACNGT	4 cut(s)	202, 349, 616, 686
Bst6I	CTCTTC	1 cut(s)	771
BstAPI	GCANNNNNTGC	1 cut(s)	550
BstDEI	CTNAG	2 cut(s)	131, 278
BstF5I	GGATG	3 cut(s)	661, 661, 885
BstFNI	CGCG	2 cut(s)	406, 611
BstHHI	GCGC	3 cut(s)	242, 389, 544
BstKTI	GATC	1 cut(s)	760
BstMAI	GTCTC	4 cut(s)	134, 208, 281, 355
BstMBI	GATC	1 cut(s)	757
BstMWI	GCNNNNNNNGC	3 cut(s)	441, 550, 628
BstNI	CCWGG	1 cut(s)	831
BstSCI	CCNGG	3 cut(s)	242, 389, 829
BstSLI	GKGCMC	2 cut(s)	227, 374
BstUI	CGCG	2 cut(s)	406, 611
BstV1I	GCAGC	1 cut(s)	400
BsuI	GTATCC	1 cut(s)	877
BsuRI	GGCC	3 cut(s)	5, 247, 394
BtsCI	GGATG	3 cut(s)	661, 661, 885
BtsIMutI	CAGTG	3 cut(s)	227, 374, 621
CfoI	GCGC	3 cut(s)	242, 389, 544
Cfr13I	GGNCC	4 cut(s)	245, 392, 733, 914
CseI	GACGC	3 cut(s)	265, 395, 412
Csp6I	GTAC	4 cut(s)	547, 559, 596, 604
CviAII	CATG	5 cut(s)	237, 384, 479, 677, 873
CviQI	GTAC	4 cut(s)	547, 559, 596, 604
DdeI	CTNAG	2 cut(s)	131, 278
DpnI	GATC	1 cut(s)	759
DpnII	GATC	1 cut(s)	757
Eam1104I	CTCTTC	1 cut(s)	771
EarI	CTCTTC	1 cut(s)	771
Eco24I	GRGCYC	1 cut(s)	446
Eco47I	GGWCC	2 cut(s)	733, 914
Eco57I	CTGAAG	2 cut(s)	548, 939
EcoO109I	RGGNCCY	2 cut(s)	733, 914
EcoRII	CCWGG	1 cut(s)	829
EcoT22I	ATGCAT	2 cut(s)	672, 849
EcoT38I	GRGCYC	1 cut(s)	446
Esp3I	CGTCTC	1 cut(s)	355
FaeI	CATG	5 cut(s)	240, 387, 482, 680, 876
FaqI	GGGAC	5 cut(s)	268, 415, 649, 770, 927
FatI	CATG	5 cut(s)	236, 383, 478, 676, 872
FauI	CCCGC	1 cut(s)	525
FauNDI	CATATG	1 cut(s)	867
Fnu4HI	GCNGC	2 cut(s)	414, 554
FokI	GGATG	3 cut(s)	648, 668, 892
FriOI	GRGCYC	1 cut(s)	446
Fsp4HI	GCNGC	2 cut(s)	414, 554
FspBI	CTAG	3 cut(s)	102, 417, 447
GlaI	GCGC	3 cut(s)	241, 388, 543
GluI	GCNGC	2 cut(s)	414, 554
GsuI	CTGGAG	2 cut(s)	620, 852
HaeIII	GGCC	3 cut(s)	5, 247, 394
HapII	CCGG	2 cut(s)	243, 390
HgaI	GACGC	3 cut(s)	265, 395, 412
HhaI	GCGC	3 cut(s)	242, 389, 544
Hin1II	CATG	5 cut(s)	240, 387, 482, 680, 876
Hin6I	GCGC	3 cut(s)	240, 387, 542
HinP1I	GCGC	3 cut(s)	240, 387, 542
HincII	GTYRAC	3 cut(s)	211, 358, 484
HindII	GTYRAC	3 cut(s)	211, 358, 484
HindIII	AAGCTT	1 cut(s)	465
HinfI	GANTC	2 cut(s)	40, 813
HpaI	GTTAAC	1 cut(s)	484
HpaII	CCGG	2 cut(s)	243, 390
HphI	GGTGA	1 cut(s)	601
Hpy166II	GTNNAC	3 cut(s)	211, 358, 484
Hpy188I	TCNGA	3 cut(s)	45, 567, 812
Hpy188III	TCNNGA	4 cut(s)	133, 280, 439, 857
Hpy8I	GTNNAC	3 cut(s)	211, 358, 484
HpyAV	CCTTC	3 cut(s)	66, 572, 586
HpyCH4III	ACNGT	4 cut(s)	202, 349, 616, 686
HpyCH4IV	ACGT	4 cut(s)	165, 215, 312, 362
HpyCH4V	TGCA	4 cut(s)	107, 631, 670, 847
HpyF10VI	GCNNNNNNNGC	3 cut(s)	441, 550, 628
HpyF3I	CTNAG	2 cut(s)	131, 278
HpySE526I	ACGT	4 cut(s)	165, 215, 312, 362
Hsp92II	CATG	5 cut(s)	240, 387, 482, 680, 876
HspAI	GCGC	3 cut(s)	240, 387, 542
KspAI	GTTAAC	1 cut(s)	484
Kzo9I	GATC	1 cut(s)	757
LmnI	GCTCC	3 cut(s)	135, 282, 619
Lsp1109I	GCAGC	1 cut(s)	400
LweI	GCATC	2 cut(s)	116, 679
MaeI	CTAG	3 cut(s)	102, 417, 447
MaeII	ACGT	4 cut(s)	165, 215, 312, 362
MaeIII	GTNAC	2 cut(s)	47, 680
MalI	GATC	1 cut(s)	759
MboI	GATC	1 cut(s)	757
MboII	GAAGA	4 cut(s)	51, 74, 665, 758
MhlI	GDGCHC	3 cut(s)	227, 374, 446
MluCI	AATT	5 cut(s)	177, 232, 324, 379, 640
MluI	ACGCGT	1 cut(s)	404
MmeI	TCCRAC	1 cut(s)	679
MnlI	CCTC	4 cut(s)	580, 771, 774, 945
Mph1103I	ATGCAT	2 cut(s)	672, 849
MseI	TTAA	2 cut(s)	483, 531
MslI	CAYNNNNRTG	1 cut(s)	675
MspI	CCGG	2 cut(s)	243, 390
MspR9I	CCNGG	3 cut(s)	244, 391, 831
MvaI	CCWGG	1 cut(s)	831
MvnI	CGCG	2 cut(s)	406, 611
MwoI	GCNNNNNNNGC	3 cut(s)	441, 550, 628
NciI	CCSGG	2 cut(s)	244, 391
NdeI	CATATG	1 cut(s)	867
NdeII	GATC	1 cut(s)	757
NlaIII	CATG	5 cut(s)	240, 387, 482, 680, 876
NlaIV	GGNNCC	2 cut(s)	735, 915
NsiI	ATGCAT	2 cut(s)	672, 849
PfeI	GAWTC	2 cut(s)	40, 813
PfoI	TCCNGGA	1 cut(s)	829
PkrI	GCNGC	2 cut(s)	415, 555
PpuMI	RGGWCCY	2 cut(s)	733, 914
Psp5II	RGGWCCY	2 cut(s)	733, 914
Psp6I	CCWGG	1 cut(s)	829
PspGI	CCWGG	1 cut(s)	829
PspN4I	GGNNCC	2 cut(s)	735, 915
PspPI	GGNCC	4 cut(s)	245, 392, 733, 914
PspPPI	RGGWCCY	2 cut(s)	733, 914
RsaI	GTAC	4 cut(s)	548, 560, 597, 605
RsaNI	GTAC	4 cut(s)	547, 559, 596, 604
RseI	CAYNNNNRTG	1 cut(s)	675
SaqAI	TTAA	2 cut(s)	483, 531
SatI	GCNGC	2 cut(s)	414, 554
Sau3AI	GATC	1 cut(s)	757
Sau96I	GGNCC	4 cut(s)	245, 392, 733, 914
ScaI	AGTACT	1 cut(s)	548
ScrFI	CCNGG	3 cut(s)	244, 391, 831
SduI	GDGCHC	3 cut(s)	227, 374, 446
SfaNI	GCATC	2 cut(s)	116, 679
SinI	GGWCC	2 cut(s)	733, 914
SmiMI	CAYNNNNRTG	1 cut(s)	675
SpeI	ACTAGT	1 cut(s)	101
Sse9I	AATT	5 cut(s)	177, 232, 324, 379, 640
SsiI	CCGC	2 cut(s)	518, 554
SspMI	CTAG	3 cut(s)	102, 417, 447
StyD4I	CCNGG	3 cut(s)	242, 389, 829
TaaI	ACNGT	4 cut(s)	202, 349, 616, 686
TaiI	ACGT	4 cut(s)	168, 218, 315, 365
TaqI	TCGA	1 cut(s)	438
TasI	AATT	5 cut(s)	177, 232, 324, 379, 640
TatI	WGTACW	2 cut(s)	546, 603
TauI	GCSGC	1 cut(s)	556
TfiI	GAWTC	2 cut(s)	40, 813
Tru1I	TTAA	2 cut(s)	483, 531
Tru9I	TTAA	2 cut(s)	483, 531
TscAI	CASTG	3 cut(s)	227, 374, 621
TseI	GCWGC	1 cut(s)	413
TspDTI	ATGAA	6 cut(s)	104, 225, 251, 372, 665, 883
TspGWI	ACGGA	2 cut(s)	196, 343
TspRI	CASTG	3 cut(s)	227, 374, 621
VpaK11BI	GGWCC	2 cut(s)	733, 914
XspI	CTAG	3 cut(s)	102, 417, 447
ZrmI	AGTACT	1 cut(s)	548
Zsp2I	ATGCAT	2 cut(s)	672, 849

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.