Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000079.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

295807 .. 300833

Gene Structure 5027 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

atggccacgaacaaacaatactcatgggaactgatgtctacaagtgtactggacatcgcatctggaatagaaatcgatgcaaatgttcaagaggcatcttccttccaaaatccaggaaccgaaaattttcttcccggaattggcataaaattggctaaaccggctgttggaatccctagaaccggtcagaatcttagaaaaattaattgctacacctccactagcccatcgctgctcagcccagaaagaaagaaaagaaaaaggaagaaggcacggcctagaaggaaagagctgacgaggcccaagttagaagaaaagaggggagaggcgagcccagcaaaaaagaaaagaaaaagaaaaaaagggggcggcccacagacgactagactctgcccaatgtcagccaggaccacatcaagcgccacgttaaccccgccacatcacctactgtcaactgccacgtcagcaccggtgaaacgtaagctccggcgactttttcgtgagattactgccgaaggaagaaggataaccaagcttgatcagattttactcaacggaaacaacattgccattctggtcccaggtggctcccctgaatatatcagagtaatagagcaagggaagtctacaatcttatcagttgaagtttttccatggagacccagctttttgttgttgctaggtgacatagttgtagggcatggtagggaacttgtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0000956 GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005688 GO:0006139 GO:0006396 GO:0006397 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008380 GO:0009056 GO:0009057 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0030532 GO:0032991 GO:0033993 GO:0034641 GO:0034655 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046540 GO:0046700 GO:0048519 GO:0050789 GO:0050896 GO:0060255 GO:0065007 GO:0071704 GO:0090304 GO:0097159 GO:0097305 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1901700 GO:1990726 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03018 ko03040 map03018 map03040

Pfam Domains

Protein Families

LSM

Protein Analysis

239

Amino Acids

26.49

Weight (kDa)

10.81

Isoelectric Point (pI)

58.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	38, 626
AciI	CCGC	2 cut(s)	369, 434
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	124
AfaI	GTAC	1 cut(s)	48
AfiI	CCNNNNNNNGG	3 cut(s)	140, 167, 182
AgeI	ACCGGT	2 cut(s)	182, 469
AgsI	TTSAA	2 cut(s)	89, 644
AjiI	CACGTC	1 cut(s)	462
AjnI	CCWGG	3 cut(s)	112, 404, 580
AluBI	AGCT	4 cut(s)	292, 484, 535, 666
AluI	AGCT	4 cut(s)	292, 484, 535, 666
Alw26I	GTCTC	1 cut(s)	652
AoxI	GGCC	4 cut(s)	3, 275, 299, 370
ApeKI	GCWGC	1 cut(s)	232
ApoI	RAATTY	1 cut(s)	124
AseI	ATTAAT	1 cut(s)	204
AsiGI	ACCGGT	2 cut(s)	182, 469
Asp700I	GAANNNNTTC	2 cut(s)	126, 648
AspLEI	GCGC	1 cut(s)	422
AspS9I	GGNCC	4 cut(s)	300, 371, 408, 577
AsuC2I	CCSGG	1 cut(s)	135
AsuHPI	GGTGA	3 cut(s)	434, 484, 695
AvaII	GGWCC	2 cut(s)	408, 577
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	335
BbvI	GCAGC	1 cut(s)	219
BccI	CCATC	1 cut(s)	235
BceAI	ACGGC	1 cut(s)	290
BciT130I	CCWGG	3 cut(s)	114, 406, 582
BclI	TGATCA	1 cut(s)	538
BcnI	CCSGG	1 cut(s)	135
BcoDI	GTCTC	1 cut(s)	652
BfaI	CTAG	5 cut(s)	177, 222, 279, 384, 680
BfoI	RGCGCY	1 cut(s)	423
BisI	GCNGC	2 cut(s)	233, 370
BlpI	GCTNAGC	1 cut(s)	236
BlsI	GCNGC	2 cut(s)	234, 371
Bme1390I	CCNGG	4 cut(s)	114, 135, 406, 582
Bme18I	GGWCC	2 cut(s)	408, 577
BmgBI	CACGTC	1 cut(s)	462
BmgT120I	GGNCC	4 cut(s)	300, 371, 408, 577
BmiI	GGNNCC	3 cut(s)	118, 579, 589
BmrFI	CCNGG	4 cut(s)	114, 135, 406, 582
BmsI	GCATC	3 cut(s)	67, 68, 104
Bpu1102I	GCTNAGC	1 cut(s)	236
BpuMI	CCSGG	1 cut(s)	135
Bsa29I	ATCGAT	1 cut(s)	75
BsaI	GGTCTC	1 cut(s)	652
BsaJI	CCNNGG	2 cut(s)	580, 653
BsaWI	WCCGGW	2 cut(s)	182, 469
BsaXI	ACNNNNNCTCC	2 cut(s)	468, 498
Bsc4I	CCNNNNNNNGG	3 cut(s)	140, 167, 182
Bse118I	RCCGGY	3 cut(s)	160, 182, 469
Bse1I	ACTGG	1 cut(s)	54
Bse3DI	GCAATG	1 cut(s)	564
BseBI	CCWGG	3 cut(s)	114, 406, 582
BseCI	ATCGAT	1 cut(s)	75
BseDI	CCNNGG	2 cut(s)	580, 653
BseLI	CCNNNNNNNGG	3 cut(s)	140, 167, 182
BseMI	GCAATG	1 cut(s)	564
BseMII	CTCAG	1 cut(s)	250
BseNI	ACTGG	1 cut(s)	54
BseXI	GCAGC	1 cut(s)	219
BseYI	CCCAGC	2 cut(s)	334, 662
BshFI	GGCC	4 cut(s)	5, 277, 301, 372
BshTI	ACCGGT	2 cut(s)	182, 469
BshVI	ATCGAT	1 cut(s)	75
BsiSI	CCGG	5 cut(s)	135, 161, 183, 470, 487
BslFI	GGGAC	1 cut(s)	563
BslI	CCNNNNNNNGG	3 cut(s)	140, 167, 182
BsmAI	GTCTC	1 cut(s)	652
BsmFI	GGGAC	1 cut(s)	563
BsnI	GGCC	4 cut(s)	5, 277, 301, 372
Bso31I	GGTCTC	1 cut(s)	652
Bsp1286I	GDGCHC	1 cut(s)	335
Bsp143I	GATC	1 cut(s)	538
Bsp1720I	GCTNAGC	1 cut(s)	236
Bsp19I	CCATGG	1 cut(s)	653
BspACI	CCGC	2 cut(s)	369, 434
BspANI	GGCC	4 cut(s)	5, 277, 301, 372
BspCNI	CTCAG	1 cut(s)	249
BspDI	ATCGAT	1 cut(s)	75
BspLI	GGNNCC	3 cut(s)	118, 579, 589
BspTNI	GGTCTC	1 cut(s)	652
BsrDI	GCAATG	1 cut(s)	564
BsrFI	RCCGGY	3 cut(s)	160, 182, 469
BsrI	ACTGG	1 cut(s)	54
BssAI	RCCGGY	3 cut(s)	160, 182, 469
BssECI	CCNNGG	2 cut(s)	580, 653
BssMI	GATC	1 cut(s)	538
BssT1I	CCWWGG	1 cut(s)	653
Bst2UI	CCWGG	3 cut(s)	114, 406, 582
Bst4CI	ACNGT	1 cut(s)	450
BstC8I	GCNNGC	1 cut(s)	331
BstDEI	CTNAG	2 cut(s)	194, 236
BstDSI	CCRYGG	1 cut(s)	653
BstH2I	RGCGCY	1 cut(s)	423
BstHHI	GCGC	1 cut(s)	422
BstKTI	GATC	1 cut(s)	541
BstMAI	GTCTC	1 cut(s)	652
BstMBI	GATC	1 cut(s)	538
BstMWI	GCNNNNNNNGC	4 cut(s)	161, 298, 335, 464
BstNI	CCWGG	3 cut(s)	114, 406, 582
BstSCI	CCNGG	4 cut(s)	112, 133, 404, 580
BstV1I	GCAGC	1 cut(s)	219
Bsu15I	ATCGAT	1 cut(s)	75
BsuRI	GGCC	4 cut(s)	5, 277, 301, 372
BsuTUI	ATCGAT	1 cut(s)	75
BtgI	CCRYGG	1 cut(s)	653
BtgZI	GCGATG	2 cut(s)	40, 213
BtrI	CACGTC	1 cut(s)	462
Cac8I	GCNNGC	1 cut(s)	331
CfoI	GCGC	1 cut(s)	422
Cfr10I	RCCGGY	3 cut(s)	160, 182, 469
Cfr13I	GGNCC	4 cut(s)	300, 371, 408, 577
ClaI	ATCGAT	1 cut(s)	75
Csp6I	GTAC	1 cut(s)	47
CspAI	ACCGGT	2 cut(s)	182, 469
CviAII	CATG	3 cut(s)	24, 654, 701
CviQI	GTAC	1 cut(s)	47
DdeI	CTNAG	2 cut(s)	194, 236
DpnI	GATC	1 cut(s)	540
DpnII	GATC	1 cut(s)	538
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	653
Eco24I	GRGCYC	1 cut(s)	335
Eco31I	GGTCTC	1 cut(s)	652
Eco47I	GGWCC	2 cut(s)	408, 577
EcoRII	CCWGG	3 cut(s)	112, 404, 580
EcoT14I	CCWWGG	1 cut(s)	653
EcoT38I	GRGCYC	1 cut(s)	335
ErhI	CCWWGG	1 cut(s)	653
FaeI	CATG	3 cut(s)	27, 657, 704
FaiI	YATR	7 cut(s)	25, 146, 600, 655, 689, 702, 718
FaqI	GGGAC	1 cut(s)	563
FatI	CATG	3 cut(s)	23, 653, 700
FauI	CCCGC	1 cut(s)	441
FbaI	TGATCA	1 cut(s)	538
FblI	GTMKAC	2 cut(s)	38, 626
Fnu4HI	GCNGC	2 cut(s)	233, 370
FriOI	GRGCYC	1 cut(s)	335
Fsp4HI	GCNGC	2 cut(s)	233, 370
FspBI	CTAG	5 cut(s)	177, 222, 279, 384, 680
GlaI	GCGC	1 cut(s)	421
GluI	GCNGC	2 cut(s)	233, 370
GsaI	CCCAGC	2 cut(s)	338, 666
HaeII	RGCGCY	1 cut(s)	423
HaeIII	GGCC	4 cut(s)	5, 277, 301, 372
HapII	CCGG	5 cut(s)	135, 161, 183, 470, 487
HhaI	GCGC	1 cut(s)	422
Hin1II	CATG	3 cut(s)	27, 657, 704
Hin6I	GCGC	1 cut(s)	420
HinP1I	GCGC	1 cut(s)	420
HincII	GTYRAC	2 cut(s)	429, 453
HindII	GTYRAC	2 cut(s)	429, 453
HindIII	AAGCTT	1 cut(s)	533
HinfI	GANTC	3 cut(s)	171, 190, 387
HpaI	GTTAAC	1 cut(s)	429
HpaII	CCGG	5 cut(s)	135, 161, 183, 470, 487
HphI	GGTGA	3 cut(s)	434, 484, 695
Hpy166II	GTNNAC	5 cut(s)	39, 47, 429, 453, 627
Hpy188I	TCNGA	3 cut(s)	189, 543, 605
Hpy188III	TCNNGA	3 cut(s)	63, 89, 500
Hpy8I	GTNNAC	5 cut(s)	39, 47, 429, 453, 627
HpyAV	CCTTC	5 cut(s)	112, 262, 276, 509, 516
HpyCH4III	ACNGT	1 cut(s)	450
HpyCH4IV	ACGT	3 cut(s)	425, 461, 478
HpyCH4V	TGCA	1 cut(s)	80
HpyF10VI	GCNNNNNNNGC	4 cut(s)	161, 298, 335, 464
HpyF3I	CTNAG	2 cut(s)	194, 236
HpySE526I	ACGT	3 cut(s)	425, 461, 478
Hsp92II	CATG	3 cut(s)	27, 657, 704
HspAI	GCGC	1 cut(s)	420
Ksp22I	TGATCA	1 cut(s)	538
KspAI	GTTAAC	1 cut(s)	429
Kzo9I	GATC	1 cut(s)	538
LmnI	GCTCC	2 cut(s)	489, 593
Lsp1109I	GCAGC	1 cut(s)	219
LweI	GCATC	3 cut(s)	67, 68, 104
MaeI	CTAG	5 cut(s)	177, 222, 279, 384, 680
MaeII	ACGT	3 cut(s)	425, 461, 478
MaeIII	GTNAC	1 cut(s)	683
MalI	GATC	1 cut(s)	540
MboI	GATC	1 cut(s)	538
MboII	GAAGA	5 cut(s)	90, 122, 277, 323, 531
MhlI	GDGCHC	1 cut(s)	335
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	5 cut(s)	124, 138, 149, 201, 205
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	381
MmeI	TCCRAC	1 cut(s)	148
MnlI	CCTC	5 cut(s)	85, 226, 291, 312, 319
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	2 cut(s)	126, 648
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	204, 428
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	5 cut(s)	135, 161, 183, 470, 487
MspR9I	CCNGG	4 cut(s)	114, 135, 406, 582
MvaI	CCWGG	3 cut(s)	114, 406, 582
MwoI	GCNNNNNNNGC	4 cut(s)	161, 298, 335, 464
NciI	CCSGG	1 cut(s)	135
NcoI	CCATGG	1 cut(s)	653
NdeII	GATC	1 cut(s)	538
NlaIII	CATG	3 cut(s)	27, 657, 704
NlaIV	GGNNCC	3 cut(s)	118, 579, 589
NmuCI	GTSAC	1 cut(s)	683
PdmI	GAANNNNTTC	2 cut(s)	126, 648
PfeI	GAWTC	2 cut(s)	171, 190
PfoI	TCCNGGA	2 cut(s)	112, 133
PinAI	ACCGGT	2 cut(s)	182, 469
PkrI	GCNGC	2 cut(s)	234, 371
PleI	GAGTC	1 cut(s)	381
PpsI	GAGTC	1 cut(s)	381
PshBI	ATTAAT	1 cut(s)	204
Psp6I	CCWGG	3 cut(s)	112, 404, 580
PspFI	CCCAGC	2 cut(s)	334, 662
PspGI	CCWGG	3 cut(s)	112, 404, 580
PspN4I	GGNNCC	3 cut(s)	118, 579, 589
PspPI	GGNCC	4 cut(s)	300, 371, 408, 577
PsrI	GAACNNNNNNTAC	1 cut(s)	34
RsaI	GTAC	1 cut(s)	48
RsaNI	GTAC	1 cut(s)	47
SaqAI	TTAA	2 cut(s)	204, 428
SatI	GCNGC	2 cut(s)	233, 370
Sau3AI	GATC	1 cut(s)	538
Sau96I	GGNCC	4 cut(s)	300, 371, 408, 577
SchI	GAGTC	1 cut(s)	381
ScrFI	CCNGG	4 cut(s)	114, 135, 406, 582
SduI	GDGCHC	1 cut(s)	335
SfaNI	GCATC	3 cut(s)	67, 68, 104
SgrAI	CRCCGGYG	1 cut(s)	469
SinI	GGWCC	2 cut(s)	408, 577
Sse9I	AATT	5 cut(s)	124, 138, 149, 201, 205
SsiI	CCGC	2 cut(s)	369, 434
SspMI	CTAG	5 cut(s)	177, 222, 279, 384, 680
StyD4I	CCNGG	4 cut(s)	112, 133, 404, 580
StyI	CCWWGG	1 cut(s)	653
TaaI	ACNGT	1 cut(s)	450
TaiI	ACGT	3 cut(s)	428, 464, 481
TaqI	TCGA	1 cut(s)	75
TasI	AATT	5 cut(s)	124, 138, 149, 201, 205
TatI	WGTACW	1 cut(s)	46
TauI	GCSGC	1 cut(s)	372
TfiI	GAWTC	2 cut(s)	171, 190
Tru1I	TTAA	2 cut(s)	204, 428
Tru9I	TTAA	2 cut(s)	204, 428
TseFI	GTSAC	1 cut(s)	683
TseI	GCWGC	1 cut(s)	232
Tsp45I	GTSAC	1 cut(s)	683
TspGWI	ACGGA	1 cut(s)	570
VpaK11BI	GGWCC	2 cut(s)	408, 577
VspI	ATTAAT	1 cut(s)	204
XapI	RAATTY	1 cut(s)	124
XmiI	GTMKAC	2 cut(s)	38, 626
XmnI	GAANNNNTTC	2 cut(s)	126, 648
XspI	CTAG	5 cut(s)	177, 222, 279, 384, 680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.