Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000082.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

191561 .. 193004

Gene Structure 1444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

atgcagcgcttaatgtttaaagtttttcagcctagacttatacctccatttactcttttggaggagcggtatgcgggcgagtggcagccctcttgctggtttcatcctccggaggagggtcctcatggtcctcgagattcgtttggttcccccacgtgtcctccacgcgccaatagcttttccgtgttttcgggtgactttaatccaacgcgtggatttaatctcagagatcgtccatccaacggtggagatctgctcactcgttctataaataggccgaccaataaccggtggactcccacaccagatcaactaagaatcctccaggtgctttactatgacaaggtgcttaaatgcccaactccagagcagattcaagagatctgccttaatctgcaacaatatgggcagatcgaggacgagaacgtcttcttttggttccagaacctcaaggctcgtgagaggcagaatttgaacgaatttcggaatgttccggttggtggatctctcgatctcaattttggatccactagttctactgatgatggtagatccattgatctaaactttgtcaggtccgactttcatttttcgtcttttagtcagaactttggaccgatcttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

208

Amino Acids

24.09

Weight (kDa)

5.94

Isoelectric Point (pI)

49.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	96 - 156	1.2e-09	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	425
AccB7I	CCANNNNNTGG	1 cut(s)	212
AccBSI	CCGCTC	1 cut(s)	67
AccII	CGCG	2 cut(s)	168, 211
AccIII	TCCGGA	1 cut(s)	109
AciI	CCGC	2 cut(s)	67, 74
AclWI	GGATC	4 cut(s)	511, 519, 532, 546
AcsI	RAATTY	2 cut(s)	469, 479
AcvI	CACGTG	1 cut(s)	156
AfeI	AGCGCT	1 cut(s)	8
AfiI	CCNNNNNNNGG	6 cut(s)	96, 116, 212, 242, 288, 500
AflIII	ACRYGT	2 cut(s)	155, 209
AgeI	ACCGGT	1 cut(s)	288
AgsI	TTSAA	2 cut(s)	377, 475
AhlI	ACTAGT	1 cut(s)	530
AjnI	CCWGG	1 cut(s)	324
AluBI	AGCT	1 cut(s)	177
AluI	AGCT	1 cut(s)	177
AlwI	GGATC	4 cut(s)	511, 519, 532, 546
Ama87I	CYCGRG	1 cut(s)	132
Aor13HI	TCCGGA	1 cut(s)	109
Aor51HI	AGCGCT	1 cut(s)	8
AoxI	GGCC	1 cut(s)	275
ApeKI	GCWGC	2 cut(s)	4, 85
ApoI	RAATTY	2 cut(s)	469, 479
ArsI	GACNNNNNNTTYG	1 cut(s)	606
AsiGI	ACCGGT	1 cut(s)	288
Asp700I	GAANNNNTTC	1 cut(s)	428
AspLEI	GCGC	2 cut(s)	9, 170
AspS9I	GGNCC	4 cut(s)	119, 128, 576, 614
AsuHPI	GGTGA	1 cut(s)	206
AvaI	CYCGRG	1 cut(s)	132
AvaII	GGWCC	4 cut(s)	119, 128, 576, 614
BamHI	GGATCC	1 cut(s)	524
BauI	CACGAG	1 cut(s)	456
BbrPI	CACGTG	1 cut(s)	156
BbsI	GAAGAC	1 cut(s)	421
BbvI	GCAGC	2 cut(s)	16, 97
BccI	CCATC	2 cut(s)	244, 539
BciT130I	CCWGG	1 cut(s)	326
BcuI	ACTAGT	1 cut(s)	530
BfaI	CTAG	2 cut(s)	33, 531
BfoI	RGCGCY	1 cut(s)	10
BglII	AGATCT	2 cut(s)	250, 381
BisI	GCNGC	2 cut(s)	5, 86
BlsI	GCNGC	2 cut(s)	6, 87
Bme1390I	CCNGG	1 cut(s)	326
Bme18I	GGWCC	4 cut(s)	119, 128, 576, 614
BmeT110I	CYCGRG	1 cut(s)	132
BmgT120I	GGNCC	4 cut(s)	119, 128, 576, 614
BmiI	GGNNCC	4 cut(s)	120, 148, 440, 526
BmrFI	CCNGG	1 cut(s)	326
BpiI	GAAGAC	1 cut(s)	421
BplI	GAGNNNNNCTC	2 cut(s)	240, 272
BpmI	CTGGAG	2 cut(s)	308, 348
BpuEI	CTTGAG	1 cut(s)	434
BsaAI	YACGTR	1 cut(s)	156
BsaWI	WCCGGW	3 cut(s)	109, 288, 493
BsaXI	ACNNNNNCTCC	4 cut(s)	53, 83, 145, 175
Bsc4I	CCNNNNNNNGG	6 cut(s)	96, 116, 212, 242, 288, 500
Bse118I	RCCGGY	1 cut(s)	288
BseAI	TCCGGA	1 cut(s)	109
BseBI	CCWGG	1 cut(s)	326
BseGI	GGATG	2 cut(s)	103, 236
BseLI	CCNNNNNNNGG	6 cut(s)	96, 116, 212, 242, 288, 500
BseMII	CTCAG	1 cut(s)	238
BseRI	GAGGAG	2 cut(s)	77, 128
BseXI	GCAGC	2 cut(s)	16, 97
Bsh1236I	CGCG	2 cut(s)	168, 211
BshFI	GGCC	1 cut(s)	277
BshTI	ACCGGT	1 cut(s)	288
BsiHKCI	CYCGRG	1 cut(s)	132
BsiSI	CCGG	3 cut(s)	110, 289, 494
BslI	CCNNNNNNNGG	6 cut(s)	96, 116, 212, 242, 288, 500
BsnI	GGCC	1 cut(s)	277
BsoBI	CYCGRG	1 cut(s)	132
Bsp13I	TCCGGA	1 cut(s)	109
BspACI	CCGC	2 cut(s)	67, 74
BspANI	GGCC	1 cut(s)	277
BspCNI	CTCAG	1 cut(s)	237
BspEI	TCCGGA	1 cut(s)	109
BspFNI	CGCG	2 cut(s)	168, 211
BspLI	GGNNCC	4 cut(s)	120, 148, 440, 526
BspPI	GGATC	4 cut(s)	511, 519, 532, 546
BsrBI	CCGCTC	1 cut(s)	67
BsrFI	RCCGGY	1 cut(s)	288
BssAI	RCCGGY	1 cut(s)	288
BssSI	CACGAG	1 cut(s)	456
Bst2BI	CACGAG	1 cut(s)	456
Bst2UI	CCWGG	1 cut(s)	326
Bst4CI	ACNGT	1 cut(s)	245
BstBAI	YACGTR	1 cut(s)	156
BstC8I	GCNNGC	1 cut(s)	76
BstDEI	CTNAG	2 cut(s)	224, 314
BstF5I	GGATG	2 cut(s)	103, 236
BstFNI	CGCG	2 cut(s)	168, 211
BstH2I	RGCGCY	1 cut(s)	10
BstHHI	GCGC	2 cut(s)	9, 170
BstMWI	GCNNNNNNNGC	1 cut(s)	174
BstNI	CCWGG	1 cut(s)	326
BstSCI	CCNGG	1 cut(s)	324
BstUI	CGCG	2 cut(s)	168, 211
BstV1I	GCAGC	2 cut(s)	16, 97
BstV2I	GAAGAC	1 cut(s)	421
BstX2I	RGATCY	5 cut(s)	250, 381, 503, 524, 551
BstYI	RGATCY	5 cut(s)	250, 381, 503, 524, 551
BsuRI	GGCC	1 cut(s)	277
BtsCI	GGATG	2 cut(s)	103, 236
Cac8I	GCNNGC	1 cut(s)	76
CfoI	GCGC	2 cut(s)	9, 170
Cfr10I	RCCGGY	1 cut(s)	288
Cfr13I	GGNCC	4 cut(s)	119, 128, 576, 614
CspAI	ACCGGT	1 cut(s)	288
CviAII	CATG	1 cut(s)	125
CviJI	RGCY	5 cut(s)	31, 88, 177, 277, 455
CviKI_1	RGCY	5 cut(s)	31, 88, 177, 277, 455
DdeI	CTNAG	2 cut(s)	224, 314
DraI	TTTAAA	1 cut(s)	19
DrdI	GACNNNNNNGTC	1 cut(s)	425
DseDI	GACNNNNNNGTC	1 cut(s)	425
Eco47I	GGWCC	4 cut(s)	119, 128, 576, 614
Eco47III	AGCGCT	1 cut(s)	8
Eco72I	CACGTG	1 cut(s)	156
Eco88I	CYCGRG	1 cut(s)	132
EcoO109I	RGGNCCY	1 cut(s)	119
EcoRII	CCWGG	1 cut(s)	324
FaeI	CATG	1 cut(s)	128
FaiI	YATR	6 cut(s)	41, 72, 126, 269, 339, 405
FatI	CATG	1 cut(s)	124
FauI	CCCGC	1 cut(s)	67
Fnu4HI	GCNGC	2 cut(s)	5, 86
FokI	GGATG	2 cut(s)	90, 223
Fsp4HI	GCNGC	2 cut(s)	5, 86
FspBI	CTAG	2 cut(s)	33, 531
GlaI	GCGC	2 cut(s)	8, 169
GluI	GCNGC	2 cut(s)	5, 86
GsuI	CTGGAG	2 cut(s)	308, 348
HaeII	RGCGCY	1 cut(s)	10
HaeIII	GGCC	1 cut(s)	277
HapII	CCGG	3 cut(s)	110, 289, 494
HhaI	GCGC	2 cut(s)	9, 170
Hin1II	CATG	1 cut(s)	128
Hin6I	GCGC	2 cut(s)	7, 168
HinP1I	GCGC	2 cut(s)	7, 168
HinfI	GANTC	4 cut(s)	137, 295, 318, 373
HpaII	CCGG	3 cut(s)	110, 289, 494
HphI	GGTGA	1 cut(s)	206
Hpy166II	GTNNAC	1 cut(s)	294
Hpy188I	TCNGA	4 cut(s)	227, 486, 580, 606
Hpy188III	TCNNGA	7 cut(s)	110, 134, 365, 377, 442, 458, 509
Hpy8I	GTNNAC	1 cut(s)	294
HpyCH4III	ACNGT	1 cut(s)	245
HpyCH4IV	ACGT	2 cut(s)	155, 426
HpyCH4V	TGCA	2 cut(s)	4, 397
HpyF10VI	GCNNNNNNNGC	1 cut(s)	174
HpyF3I	CTNAG	2 cut(s)	224, 314
HpySE526I	ACGT	2 cut(s)	155, 426
Hsp92II	CATG	1 cut(s)	128
HspAI	GCGC	2 cut(s)	7, 168
Kpn2I	TCCGGA	1 cut(s)	109
LmnI	GCTCC	1 cut(s)	64
Lsp1109I	GCAGC	2 cut(s)	16, 97
MaeI	CTAG	2 cut(s)	33, 531
MaeII	ACGT	2 cut(s)	155, 426
MaeIII	GTNAC	1 cut(s)	194
MbiI	CCGCTC	1 cut(s)	67
MboII	GAAGA	1 cut(s)	421
MflI	RGATCY	5 cut(s)	250, 381, 503, 524, 551
MluCI	AATT	3 cut(s)	469, 479, 517
MluI	ACGCGT	1 cut(s)	209
MlyI	GAGTC	1 cut(s)	289
MmeI	TCCRAC	3 cut(s)	230, 264, 603
MroI	TCCGGA	1 cut(s)	109
MroXI	GAANNNNTTC	1 cut(s)	428
MseI	TTAA	6 cut(s)	11, 18, 201, 219, 351, 390
MspI	CCGG	3 cut(s)	110, 289, 494
MspR9I	CCNGG	1 cut(s)	326
MvaI	CCWGG	1 cut(s)	326
MvnI	CGCG	2 cut(s)	168, 211
MwoI	GCNNNNNNNGC	1 cut(s)	174
NlaIII	CATG	1 cut(s)	128
NlaIV	GGNNCC	4 cut(s)	120, 148, 440, 526
NmuCI	GTSAC	1 cut(s)	194
PaeR7I	CTCGAG	1 cut(s)	132
PdmI	GAANNNNTTC	1 cut(s)	428
PfeI	GAWTC	3 cut(s)	137, 318, 373
PflMI	CCANNNNNTGG	1 cut(s)	212
PinAI	ACCGGT	1 cut(s)	288
PkrI	GCNGC	2 cut(s)	6, 87
PleI	GAGTC	1 cut(s)	289
PmaCI	CACGTG	1 cut(s)	156
PmlI	CACGTG	1 cut(s)	156
PpsI	GAGTC	1 cut(s)	289
Ppu21I	YACGTR	1 cut(s)	156
PpuMI	RGGWCCY	1 cut(s)	119
Psp5II	RGGWCCY	1 cut(s)	119
Psp6I	CCWGG	1 cut(s)	324
PspCI	CACGTG	1 cut(s)	156
PspGI	CCWGG	1 cut(s)	324
PspN4I	GGNNCC	4 cut(s)	120, 148, 440, 526
PspPI	GGNCC	4 cut(s)	119, 128, 576, 614
PspPPI	RGGWCCY	1 cut(s)	119
PsuI	RGATCY	5 cut(s)	250, 381, 503, 524, 551
SaqAI	TTAA	6 cut(s)	11, 18, 201, 219, 351, 390
SatI	GCNGC	2 cut(s)	5, 86
Sau96I	GGNCC	4 cut(s)	119, 128, 576, 614
SchI	GAGTC	1 cut(s)	289
ScrFI	CCNGG	1 cut(s)	326
SetI	ASST	8 cut(s)	46, 158, 179, 330, 348, 429, 450, 578
Sfr274I	CTCGAG	1 cut(s)	132
SinI	GGWCC	4 cut(s)	119, 128, 576, 614
SlaI	CTCGAG	1 cut(s)	132
SmlI	CTYRAG	2 cut(s)	132, 449
SmoI	CTYRAG	2 cut(s)	132, 449
SpeI	ACTAGT	1 cut(s)	530
Sse9I	AATT	3 cut(s)	469, 479, 517
SsiI	CCGC	2 cut(s)	67, 74
SspMI	CTAG	2 cut(s)	33, 531
StyD4I	CCNGG	1 cut(s)	324
TaaI	ACNGT	1 cut(s)	245
TaiI	ACGT	2 cut(s)	158, 429
TaqI	TCGA	3 cut(s)	133, 414, 510
TasI	AATT	3 cut(s)	469, 479, 517
TfiI	GAWTC	3 cut(s)	137, 318, 373
Tru1I	TTAA	6 cut(s)	11, 18, 201, 219, 351, 390
Tru9I	TTAA	6 cut(s)	11, 18, 201, 219, 351, 390
TseFI	GTSAC	1 cut(s)	194
TseI	GCWGC	2 cut(s)	4, 85
Tsp45I	GTSAC	1 cut(s)	194
TspDTI	ATGAA	2 cut(s)	92, 575
TspGWI	ACGGA	1 cut(s)	172
Van91I	CCANNNNNTGG	1 cut(s)	212
VpaK11BI	GGWCC	4 cut(s)	119, 128, 576, 614
XapI	RAATTY	2 cut(s)	469, 479
XhoI	CTCGAG	1 cut(s)	132
XmnI	GAANNNNTTC	1 cut(s)	428
XspI	CTAG	2 cut(s)	33, 531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.